Cucsa.085300.3 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.085300.3
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	La-related protein 7
Location	scaffold00867 : 177589 .. 180500 (-)
Sequence length	1434

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAGGAAATAAAAAAAAAAGATTAAAGCATGGCGCAACTGAATCCAGAAGAGAAGTTTAGTGAAAACCATTCTGAAATGGAGGCCAATCAAGAAGCTATCATCAATAGCGAAAGCGATGGAAGTAGTAATAGCAGTCTTGCTAATTTGGCCTTCAGATTTAATGCGCAAGCGCCTGAGTTTTTCCCTAGAACGCAAACCCAGATGCCTGTTACCGGTTATTTTCATCCCTATTTTCATTTTCTAGGTGGGGGCCCTGCTTCTTCAGATTGGTTCTTTATTGGGGACCAAGAACCTGCTTATTTGATCCCTAATCCCAACATTCAGCTCCCTAATTTCTCTAAGCATGCTCGTTCTGAGGAGATTCAGCAAAAAATCGTCAAACAGGTACTCTCTTCTCTTTAAAATTATCAATCACTAAGCTTTGATTTGAATTACTCCATTGGGCACCATATATACATATTTCTTGTCATGTTTCATAAAATGTCATTTTAGATACTCTTGGGGGATCTTGAATTGGCTGGGACATTTGTTTTCTTTTGTTTGTATGGTTTCTTGCTGTTGGATAAGTAAAAGAAAATGCATTTTAGATACTCTGTACATGTGACTGGTATCATAATGTCCATTAGATACACCACTTTTTCATCTTTTGTAGTTTCTCACATCCCTCTTCCGTTAGTTTTCTCCTTAGATTCCTCTTGATGTGTTTGATACCTCTTTCTTTAGGCTCTGAAGTCGGTGTGTTACGCTGAGAGTTTGCAAATTCGATGTGCATAAGTTTTATGTAACTATAATCCCATTTACGTGATCATTGTGATGTTTGGTCCTCGGTGAGGTTCCATGCTTCTCTTTGGTCTCAGGTCTCGAGTACTTTTTTGTAGGCAGAATCTTAATTGTAAACCCTTTCTTTAAAGGGATTTTATCAGCTTGTTTTTTTGTTGCCCTTGTATTCTCTTAAAAGACGCTCACGTTAAGCCTACCCAACTTTGAACTCCGTACTTTTTTTCAAGAAGGTTTATCATGTTCAGGTGCCAATGGGATAATGCTGATTTTTACATGAGAACTTTCAGTATCTTATGGATGATTTCAATTTTACAGGTAGAATATCAGCTTAGTGACATGAGTCTTCTTGCAAATGAGACTCTTGCAAAACACATTAGTAAAGATCCCGATGGTTATGGTATGGCCTTTGCAAGACTATATATTACACGGATGCTTTAATTTAAGTTTTCGATATGCTTTAAACTGGATTATTTTTTTGTGTTTGTTTTTCATTCTGTTTATGAAGTTCCGATTTCTATTCTTTCGTCGACAAAAAAAGTTAAGTCTCTCTCAACCAACAACAATTTCATAGTTCAAGCACTCCGCTCCTCTTCAAGGCTTGTAAGTTCCGTAGTAGAACATTCCGTTCTTTACTCTTTATTAATTATTGATCAATACCTGGTTCCGAAGGTTGTCAGTTCTGATGGGAAGAGAGTTAGGCGTAAGGTTCCATTCACAGACAAGGACAAAGAGGAATTGCTGGTAAGATCAGCCATTGTACAAATAATGCAGAACATTTCTTTTTAGCTGAACAGTGAGTAATATTTTGTTCTTCGATTTGCAGGCCCGCACAGTTGTTGCTGAGAATTTGCCCGAAAATCACTCTCATCACAATCTGGAGAAAATATTCAGTGTGGTTGGAAGGTAGTTTCGTTGACATTATCACTATATCATATTCTATCTGTTTAGATGATAAACTGTCTGAGCATCATTCATTGGTGATATCTAACCAGTGTGAAAACCATCCGAATCTGTCATCCCCCGGAATCGAATCCCTGCTGCTCTAAAGGTGAATTGTTTGTCAGTAACAAGGTATTGTGAATCATGCTTTACTATAATGTATATAACCAAGATACTTCTCTTCACAATCTATTTCTATAATGGATACTTCATTTCTTTGAAGCTTCATGCACTCGTGGAGTTTGAGACAGCAGAGTTAGCTGAAAGAGCGGTATGCATTTATTGTAGAGCTATAATGGATCGAGTTTCTTGTAATTCAATCTTCTTAATGTCTTTTCCACTTATAGATTGAGCAGTTAAACGATGAGAGAAACTGGAGGAAAGGACTCCGAGTGAGGCCACTGGTGAGACGCTCGGTAAGTGTAATTAATAAGTTATGCAAAGGGTGGAGTTCTTGTTTACTATTTCATGCATTTTCACTATTTCCCTGCTCCTTACCATAGTACAACAGCTCTAATTATTATTTCTATGTGAATGCAAAAACGGATAGCCGAAATCTGTTCTGAAGAATCGAAAATCAGAATTCGATAGCGTTTTGGATGAAGATGATTCACCATCTCCTGTATCGGTCGAAGAGTCCCCACTGCAAAATATCAATGACCTGAATGTCGATTGCAATGTATGTATTTTTACGGAAAGCTGTGTTGTCCTTGAATGATGTGTTTAGCAATTGATCAATGGACAGTATACATTATTTTCTTTTTTACTAGTCTGAAGAGAACTCTACATCATTGAAGAAGAGTTGGGGTCGAGGACGTGGGAAGGGCCGTGGACGAATTCATGGCAATCTCGATCGTAGCTATAGCTTGCCAGTTACATCATCTCTGCAGACGAGTGGGCAGGTTTTGAGTGAAGCTTCTTCCAAACTGACTACAAAGAGTCCAAGAATGCCTGATGGGACTAAAGGTTTCACCATGGGAAGAGGCAAGCCATTAAGCTCTAAACCTCTAGTCAATAGGCTTGTTGACTGATAGAAGAAATGTAGGGAAATCTCTGTTTGATTTATTGAGTAGGGTGGAAGGAACTATGAATTTTTTTTATTTTTTATTTTTATGAGACCATTCACAGTTTTGCTGCTACATTTTATTTCATTTATGTATTATTTAATAAAAAATTTGGTAATAATGGAGA

mRNA sequence

CGCAGGAAATAAAAAAAAAAGATTAAAGCATGGCGCAACTGAATCCAGAAGAGAAGTTTAGTGAAAACCATTCTGAAATGGAGGCCAATCAAGAAGCTATCATCAATAGCGAAAGCGATGGAAGTAGTAATAGCAGTCTTGCTAATTTGGCCTTCAGATTTAATGCGCAAGCGCCTGAGTTTTTCCCTAGAACGCAAACCCAGATGCCTGTTACCGGTTATTTTCATCCCTATTTTCATTTTCTAGGTGGGGGCCCTGCTTCTTCAGATTGGTTCTTTATTGGGGACCAAGAACCTGCTTATTTGATCCCTAATCCCAACATTCAGCTCCCTAATTTCTCTAAGCATGCTCGTTCTGAGGAGATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGCTTAGTGACATGAGTCTTCTTGCAAATGAGACTCTTGCAAAACACATTAGTAAAGATCCCGATGGTTATGTTCCGATTTCTATTCTTTCGTCGACAAAAAAAGTTAAGTCTCTCTCAACCAACAACAATTTCATAGTTCAAGCACTCCGCTCCTCTTCAAGGCTTGTTGTCAGTTCTGATGGGAAGAGAGTTAGGCGTAAGGTTCCATTCACAGACAAGGACAAAGAGGAATTGCTGGCCCGCACAGTTGTTGCTGAGAATTTGCCCGAAAATCACTCTCATCACAATCTGGAGAAAATATTCAGTGTGGTTGGAAGTGTGAAAACCATCCGAATCTGTCATCCCCCGGAATCGAATCCCTGCTGCTCTAAAGGTGAATTGTTTGTCAGTAACAAGCTTCATGCACTCGTGGAGTTTGAGACAGCAGAGTTAGCTGAAAGAGCGATTGAGCAGTTAAACGATGAGAGAAACTGGAGGAAAGGACTCCGAGTGAGGCCACTGGTGAGACGCTCGCCGAAATCTGTTCTGAAGAATCGAAAATCAGAATTCGATAGCGTTTTGGATGAAGATGATTCACCATCTCCTGTATCGGTCGAAGAGTCCCCACTGCAAAATATCAATGACCTGAATGTCGATTGCAATAAGAGTTGGGGTCGAGGACGTGGGAAGGGCCGTGGACGAATTCATGGCAATCTCGATCGTAGCTATAGCTTGCCAGTTACATCATCTCTGCAGACGAGTGGGCAGGTTTTGAGTGAAGCTTCTTCCAAACTGACTACAAAGAGTCCAAGAATGCCTGATGGGACTAAAGGTTTCACCATGGGAAGAGGCAAGCCATTAAGCTCTAAACCTCTAGTCAATAGGCTTGTTGACTGATAGAAGAAATGTAGGGAAATCTCTGTTTGATTTATTGAGTAGGGTGGAAGGAACTATGaattttttttattttttatttttatGAGACCATTCACAGTTTTGCTGCTACattttatttcatttatgtattatttaataaaaaatttGGTAATAATGGAGA

Coding sequence (CDS)

ATGGCGCAACTGAATCCAGAAGAGAAGTTTAGTGAAAACCATTCTGAAATGGAGGCCAATCAAGAAGCTATCATCAATAGCGAAAGCGATGGAAGTAGTAATAGCAGTCTTGCTAATTTGGCCTTCAGATTTAATGCGCAAGCGCCTGAGTTTTTCCCTAGAACGCAAACCCAGATGCCTGTTACCGGTTATTTTCATCCCTATTTTCATTTTCTAGGTGGGGGCCCTGCTTCTTCAGATTGGTTCTTTATTGGGGACCAAGAACCTGCTTATTTGATCCCTAATCCCAACATTCAGCTCCCTAATTTCTCTAAGCATGCTCGTTCTGAGGAGATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGCTTAGTGACATGAGTCTTCTTGCAAATGAGACTCTTGCAAAACACATTAGTAAAGATCCCGATGGTTATGTTCCGATTTCTATTCTTTCGTCGACAAAAAAAGTTAAGTCTCTCTCAACCAACAACAATTTCATAGTTCAAGCACTCCGCTCCTCTTCAAGGCTTGTTGTCAGTTCTGATGGGAAGAGAGTTAGGCGTAAGGTTCCATTCACAGACAAGGACAAAGAGGAATTGCTGGCCCGCACAGTTGTTGCTGAGAATTTGCCCGAAAATCACTCTCATCACAATCTGGAGAAAATATTCAGTGTGGTTGGAAGTGTGAAAACCATCCGAATCTGTCATCCCCCGGAATCGAATCCCTGCTGCTCTAAAGGTGAATTGTTTGTCAGTAACAAGCTTCATGCACTCGTGGAGTTTGAGACAGCAGAGTTAGCTGAAAGAGCGATTGAGCAGTTAAACGATGAGAGAAACTGGAGGAAAGGACTCCGAGTGAGGCCACTGGTGAGACGCTCGCCGAAATCTGTTCTGAAGAATCGAAAATCAGAATTCGATAGCGTTTTGGATGAAGATGATTCACCATCTCCTGTATCGGTCGAAGAGTCCCCACTGCAAAATATCAATGACCTGAATGTCGATTGCAATAAGAGTTGGGGTCGAGGACGTGGGAAGGGCCGTGGACGAATTCATGGCAATCTCGATCGTAGCTATAGCTTGCCAGTTACATCATCTCTGCAGACGAGTGGGCAGGTTTTGAGTGAAGCTTCTTCCAAACTGACTACAAAGAGTCCAAGAATGCCTGATGGGACTAAAGGTTTCACCATGGGAAGAGGCAAGCCATTAAGCTCTAAACCTCTAGTCAATAGGCTTGTTGACTGA

Protein sequence

MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMPVTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCNKSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPLVNRLVD*

Homology

[Close]

BLAST of Cucsa.085300.3 vs. Swiss-Prot
Match: LRP6C_ARATH (La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.4e-109
Identity = 221/446 (49.55%), Postives = 296/446 (66.37%), Query Frame = 1


Query: 15  SEMEANQEAIINSES---DGSSNSSLANL-AFRFNAQAPEFFPRTQTQMP------VTGY 74
           ++M+  +   + +E    DG   SS A   AF+FNAQAPEF PR+ T  P      V+GY
Sbjct: 2   AQMQREEVESVTTEKKRLDGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGY 61

Query: 75  FHPYFHFLGG-----------------GPASSDWFFIGDQEP------------AYLIPN 134
           F+P FH+ GG                 G  SSDW ++G  +P            A+ I N
Sbjct: 62  FYPCFHYNGGCIGGCGGGVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISN 121

Query: 135 PNIQLP------NFSKHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPI 194
           P +Q P      + SK+  S++++ KIVKQVEYQ +DMSLLANE+++KHISKDP+GYVP+
Sbjct: 122 PAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPV 181

Query: 195 SILSSTKKVKSLSTNNNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAE 254
           S ++STKK+K+L++N++ +  ALRSSS+LVVS DGK+V+R   FTD+D+EEL  RTVVAE
Sbjct: 182 SYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAE 241

Query: 255 NLPENHSHHNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAE 314
           NLP++HS+ NLEKIF VVG+VK IRICHPPESN    KG+  +SNK+HAL+E++   +A+
Sbjct: 242 NLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIAD 301

Query: 315 RAIEQLNDERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNI 374
           +A+E+LNDERNWRKGLRVR L+R SPKSVLKNR++ FD +L +D+ PS  S E+SP  ++
Sbjct: 302 KAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNRRN-FDGILIDDELPSYESGEDSPRLHL 361

Query: 375 NDLNVDCNKS-------WGRGRGKGRGR-----IHGNLDRSYSLPVTSSLQTSGQVLSEA 403
            +  +D +         WG+GRGKGRGR       G   RS+ + +  SL        E+
Sbjct: 362 TESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHES 421

[Close]

BLAST of Cucsa.085300.3 vs. Swiss-Prot
Match: LRP6B_ARATH (La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-55
Identity = 135/361 (37.40%), Postives = 199/361 (55.12%), Query Frame = 1


Query: 104 SKHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLST 163
           SK    E+  QKIV QVEY  SD++L   + L + I KDP+GYVPI +++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 164 NNNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKI 223
           NN+ +   L++S++L VS DGK+VRR  P T+   EEL +R +VAENLPE+H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 224 FSVVGSVKTIRICHPPES---------NPCCSKGELFVSNKLHALVEFETAELAERAIEQ 283
           FS VGSVK IR C P  +         +   S G LF SNK+HA VE+E  ELAERA+ +
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLF-SNKVHAFVEYEIVELAERAVTE 364

Query: 284 LNDERNWRKGLRVRPLVR---RSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNIND 343
           L++  NWR GL+VR +++   + PK      +   D+ ++ ++  +  S E+ P++  +D
Sbjct: 365 LSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTS-EQQPIEKQSD 424

Query: 344 LNVDCNKSW---------------------------GRGRGKGRGRIHGNLDRSYSLPVT 403
              DC+  W                           GRG+G+GRG+ H N +++ +    
Sbjct: 425 ---DCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHN 484

[Close]

BLAST of Cucsa.085300.3 vs. Swiss-Prot
Match: LRP6A_ARATH (La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-40
Identity = 110/313 (35.14%), Postives = 167/313 (53.35%), Query Frame = 1


Query: 110 EEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIV 169
           +E+ QKI++QVEY  SD +L  ++ L   + ++  G+VPIS +++  K+K L+ ++  IV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 170 QALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGS 229
            AL+ SS LVVS+D K+V+R  P  +    ++   TV+ ENLPE+HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 230 VKTIRICHP--PESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRV 289
           +K++ IC P   E +    K E F+  +LHA VE+ET E AE+A   LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 290 RPL--------VRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDL------- 349
           + L         RR  +  +   K     V D+          E     ++         
Sbjct: 281 KLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPADDD 340

Query: 350 --NVDCNKSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPD 404
             N   +K+  +GR  G+GR   +   +     T+S  +         SK     PRMPD
Sbjct: 341 GGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSK-RPPGPRMPD 400

[Close]

BLAST of Cucsa.085300.3 vs. Swiss-Prot
Match: LARP7_MOUSE (La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-21
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 1


Query: 105 KHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTN 164
           K +R +++   I KQV++   D +L  ++ L + I K  DGYV IS+L S  K+K L+T+
Sbjct: 21  KRSRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 80

Query: 165 NNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIF 224
              I +AL+SSS + +  +G R+RRK P  ++ K+E   RTV  E LP+N +H  +E++F
Sbjct: 81  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 140

Query: 225 SVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 278
              G+V  I I H   +             K  A VEFET E A +AIE LN+
Sbjct: 141 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 182

[Close]

BLAST of Cucsa.085300.3 vs. Swiss-Prot
Match: LARP7_RAT (La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-21
Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 1


Query: 105 KHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTN 164
           K +R +++   I KQV++   D +L  +  L + I K  DGYV IS+L S  K+K L+T+
Sbjct: 22  KRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 81

Query: 165 NNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIF 224
              I +AL+SSS + +  +G R+RRK P  ++ K+E   RTV  E LP+N +H  +E++F
Sbjct: 82  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 141

Query: 225 SVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 278
              G+V  I I H   +             K  A VEFET E A +AIE LN+
Sbjct: 142 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 183

[Close]

BLAST of Cucsa.085300.3 vs. TrEMBL
Match: A0A0A0LIU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G235610 PE=4 SV=1)

HSP 1 Score: 807.0 bits (2083), Expect = 1.1e-230
Identity = 414/446 (92.83%), Postives = 414/446 (92.83%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60
           MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP
Sbjct: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60

Query: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120
           VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRL-- 180
           EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRL  
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVS 180

Query: 181 ---------------------VVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH 240
                                VVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH
Sbjct: 181 SVVEHSVLYSLLIIDQYLVPKVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH 240

Query: 241 HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 300
           HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND
Sbjct: 241 HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 300

Query: 301 ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN 360
           ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN
Sbjct: 301 ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN 360

Query: 361 ---------KSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRM 415
                    KSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRM
Sbjct: 361 SEENSTSLKKSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRM 420

[Close]

BLAST of Cucsa.085300.3 vs. TrEMBL
Match: D7TPP1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01050 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 3.6e-133
Identity = 248/422 (58.77%), Postives = 310/422 (73.46%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60
           MAQL  EE+   N    E         E   SS ++ A  +F+FNAQAPEF PR+ TQ+P
Sbjct: 1   MAQLKREEQEMVNQETAEM--------EKKESSTTTSAAASFKFNAQAPEFVPRSHTQVP 60

Query: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120
           ++GYF+P FH LGGG  S+DW ++ DQ+P + I N N  LPN SK+  + +IQQKI+KQV
Sbjct: 61  ISGYFYPCFHLLGGGAGSADWLYVADQDPVHFISNSNGSLPNSSKNLLTHDIQQKIIKQV 120

Query: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180
           EYQ +DMSLLA+++LAKHI+KDP+GYVPIS+++S+KKVK+L +NN  + QALRSSS+LVV
Sbjct: 121 EYQFNDMSLLASDSLAKHINKDPEGYVPISVIASSKKVKALVSNNQLLAQALRSSSQLVV 180

Query: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240
           SSDGK+VRRK  FT++DKEEL A TVVAENLPE+HSH NL+KIFSVVGSVK IRICHP E
Sbjct: 181 SSDGKKVRRKHLFTERDKEELQAHTVVAENLPEDHSHQNLQKIFSVVGSVKNIRICHPQE 240

Query: 241 SNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300
           SN   SKG+ F+SNKLHALVE+E+ E+AE+A+E LNDERNWRKGLRVR L+RRSPKSVLK
Sbjct: 241 SNNSRSKGDFFISNKLHALVEYESVEIAEKAVEMLNDERNWRKGLRVRMLLRRSPKSVLK 300

Query: 301 NRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN---------KSWGRGRGKGRGRI 360
           NR+SEFD ++DE++ P P   E+S   N  +L ++ N         K W RGRGK RGR 
Sbjct: 301 NRRSEFDGIMDEEEGPHPEFSEDSSHPNNTELVIESNAEENSSGSKKGWARGRGKPRGRT 360

Query: 361 HGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPLVNR 414
                R    P   S Q+SG    EAS+K  TK PRMPDGT+GFTMGRGKP+S+  L + 
Sbjct: 361 QITSGRGLLAP---SPQSSGSNQFEASAKQITKGPRMPDGTRGFTMGRGKPISTPALASP 411

[Close]

BLAST of Cucsa.085300.3 vs. TrEMBL
Match: A0A061DZS6_THECC (RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007000 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 6.3e-130
Identity = 248/424 (58.49%), Postives = 313/424 (73.82%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSE-------MEANQEAIINS-ESDGSSNSSLANLAFRFNAQAPEFF 60
           MAQ  PEEK  E   E       M A +    NS  S+GSS S+  ++ F+FNAQAPEF 
Sbjct: 1   MAQAQPEEKPKEEPQEKFQMKDAMAAKRTTSCNSGSSNGSSTSN--SVTFKFNAQAPEFV 60

Query: 61  PRTQTQMPVTGYFHPYFHFLGGGPASSDWFFIGDQEPA-YLIPNPNIQLPNFS-KHARSE 120
           PR+ TQ+P++GY++P FH+LGG    SDWFF+GDQEPA YLI NPN+ +PN S K+  ++
Sbjct: 61  PRSHTQVPLSGYYYPCFHYLGGA-GGSDWFFVGDQEPADYLISNPNLPIPNCSSKNLLTD 120

Query: 121 EIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQ 180
           +++QKI++QVEYQ +DMSLLANE+L+K ISKDP+GYV IS ++S KK+KSL TNN  + Q
Sbjct: 121 DLRQKIIRQVEYQFNDMSLLANESLSKQISKDPEGYVSISFIASMKKIKSLITNNQLLAQ 180

Query: 181 ALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSV 240
           ALRSSS+LVVS DGK+V+RK PFT+K +EE+ +RTVV ENLPE+HSH NL+KIF+VVGSV
Sbjct: 181 ALRSSSKLVVSDDGKKVKRKHPFTEKKREEVASRTVVIENLPEDHSHQNLDKIFNVVGSV 240

Query: 241 KTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPL 300
           + IRICHP ESN   SK + F+ NKLHALVE+E+ E+AE+A+++LNDERNWRKGLRVR L
Sbjct: 241 QNIRICHPQESNSSRSKSDFFMCNKLHALVEYESTEIAEKAVDKLNDERNWRKGLRVRLL 300

Query: 301 VRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNI---------NDLNVDCNKSWG 360
           +R SPKSVLK+RKSEFD +LDED+SP     E+S L NI          D  V   K WG
Sbjct: 301 LRLSPKSVLKSRKSEFDGILDEDESPVAEYSEDSSLSNIAEAIENNADQDNAVGSKKGWG 360

Query: 361 RGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGK 406
           +GRGKGRGR+  +  R     + +  Q    V  EAS K T+K PRMPDGT+GFTMGRGK
Sbjct: 361 KGRGKGRGRVQNHSGRGL---IAACPQPGSAVQCEASVKQTSKGPRMPDGTRGFTMGRGK 418

[Close]

BLAST of Cucsa.085300.3 vs. TrEMBL
Match: M5VJI3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024894mg PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 1.2e-128
Identity = 251/416 (60.34%), Postives = 304/416 (73.08%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60
           MAQ  P  + +++  EME  +  I  S              F+FNAQAPEF PR+ TQMP
Sbjct: 1   MAQPQPPGEKTQDAPEMEVKENPISPS--------------FKFNAQAPEFVPRSHTQMP 60

Query: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQE-PAYLIPN-PNIQLPNFSKHARSEEIQQKIVK 120
           ++GYF+P FHFLG   AS DWF+IGDQE P YLI N PNI L N SK+A  +++QQKI+K
Sbjct: 61  ISGYFYPCFHFLGES-ASPDWFYIGDQELPPYLISNNPNIPLANRSKNALPDDLQQKIIK 120

Query: 121 QVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRL 180
           QVEYQ SDMSLLANE+L KHISKDP+GYVPIS+++STKK+KSL +NN+ + QALRSSS+L
Sbjct: 121 QVEYQFSDMSLLANESLVKHISKDPEGYVPISVVASTKKMKSLISNNHMLAQALRSSSKL 180

Query: 181 VVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHP 240
           VV+ DGK+VRRK PFT+KDKEEL +RTVVAENLPE+HSH NLEKIFSVVGSVKTIRICHP
Sbjct: 181 VVNEDGKKVRRKYPFTEKDKEELQSRTVVAENLPEDHSHQNLEKIFSVVGSVKTIRICHP 240

Query: 241 PESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSV 300
            ESN   SKG+  +SNKLHALVE+ET ++AERA+++L+DERNWRKGLRVR L+RRSPKSV
Sbjct: 241 HESNSSRSKGDFIISNKLHALVEYETTDIAERAVDKLSDERNWRKGLRVRLLLRRSPKSV 300

Query: 301 LKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVD---------CNKSWGRGRGKGRG 360
           LKNRKS+FD +L ED+ P     EE+   +  +L  D           K W  GRGK RG
Sbjct: 301 LKNRKSDFDGIL-EDEEPQYDCAEETSQPSNPELVTDSPNEENLAASKKGWAWGRGKARG 360

Query: 361 RIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSS 406
           R  G   R    P   S Q+S  +  EA +K   K PRMPDGT+GFTMGRGKP+S+
Sbjct: 361 RGQGQSGRGLIAP---SPQSSNTIQCEAPAKQNAKGPRMPDGTRGFTMGRGKPVSA 397

[Close]

BLAST of Cucsa.085300.3 vs. TrEMBL
Match: A0A061E1L4_THECC (RNA-binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007000 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 1.6e-128
Identity = 248/425 (58.35%), Postives = 313/425 (73.65%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSE-------MEANQEAIINS-ESDGSSNSSLANLAFRFNAQAPEFF 60
           MAQ  PEEK  E   E       M A +    NS  S+GSS S+  ++ F+FNAQAPEF 
Sbjct: 1   MAQAQPEEKPKEEPQEKFQMKDAMAAKRTTSCNSGSSNGSSTSN--SVTFKFNAQAPEFV 60

Query: 61  PRTQTQMPVTGYFHPYFHFLGGGPASSDWFFIGDQEPA-YLIPNPNIQLPNFS-KHARSE 120
           PR+ TQ+P++GY++P FH+LGG    SDWFF+GDQEPA YLI NPN+ +PN S K+  ++
Sbjct: 61  PRSHTQVPLSGYYYPCFHYLGGA-GGSDWFFVGDQEPADYLISNPNLPIPNCSSKNLLTD 120

Query: 121 EIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQ 180
           +++QKI++QVEYQ +DMSLLANE+L+K ISKDP+GYV IS ++S KK+KSL TNN  + Q
Sbjct: 121 DLRQKIIRQVEYQFNDMSLLANESLSKQISKDPEGYVSISFIASMKKIKSLITNNQLLAQ 180

Query: 181 ALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSV 240
           ALRSSS+LVVS DGK+V+RK PFT+K +EE+ +RTVV ENLPE+HSH NL+KIF+VVGSV
Sbjct: 181 ALRSSSKLVVSDDGKKVKRKHPFTEKKREEVASRTVVIENLPEDHSHQNLDKIFNVVGSV 240

Query: 241 KTIRICHPPESNPCCSKGELFVSN-KLHALVEFETAELAERAIEQLNDERNWRKGLRVRP 300
           + IRICHP ESN   SK + F+ N KLHALVE+E+ E+AE+A+++LNDERNWRKGLRVR 
Sbjct: 241 QNIRICHPQESNSSRSKSDFFMCNKKLHALVEYESTEIAEKAVDKLNDERNWRKGLRVRL 300

Query: 301 LVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNI---------NDLNVDCNKSW 360
           L+R SPKSVLK+RKSEFD +LDED+SP     E+S L NI          D  V   K W
Sbjct: 301 LLRLSPKSVLKSRKSEFDGILDEDESPVAEYSEDSSLSNIAEAIENNADQDNAVGSKKGW 360

Query: 361 GRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRG 406
           G+GRGKGRGR+  +  R     + +  Q    V  EAS K T+K PRMPDGT+GFTMGRG
Sbjct: 361 GKGRGKGRGRVQNHSGRGL---IAACPQPGSAVQCEASVKQTSKGPRMPDGTRGFTMGRG 419

[Close]

BLAST of Cucsa.085300.3 vs. TAIR10
Match: AT3G19090.1 (AT3G19090.1 RNA-binding protein)

HSP 1 Score: 397.9 bits (1021), Expect = 7.7e-111
Identity = 221/446 (49.55%), Postives = 296/446 (66.37%), Query Frame = 1


Query: 15  SEMEANQEAIINSES---DGSSNSSLANL-AFRFNAQAPEFFPRTQTQMP------VTGY 74
           ++M+  +   + +E    DG   SS A   AF+FNAQAPEF PR+ T  P      V+GY
Sbjct: 2   AQMQREEVESVTTEKKRLDGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGY 61

Query: 75  FHPYFHFLGG-----------------GPASSDWFFIGDQEP------------AYLIPN 134
           F+P FH+ GG                 G  SSDW ++G  +P            A+ I N
Sbjct: 62  FYPCFHYNGGCIGGCGGGVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISN 121

Query: 135 PNIQLP------NFSKHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPI 194
           P +Q P      + SK+  S++++ KIVKQVEYQ +DMSLLANE+++KHISKDP+GYVP+
Sbjct: 122 PAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPV 181

Query: 195 SILSSTKKVKSLSTNNNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAE 254
           S ++STKK+K+L++N++ +  ALRSSS+LVVS DGK+V+R   FTD+D+EEL  RTVVAE
Sbjct: 182 SYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAE 241

Query: 255 NLPENHSHHNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAE 314
           NLP++HS+ NLEKIF VVG+VK IRICHPPESN    KG+  +SNK+HAL+E++   +A+
Sbjct: 242 NLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIAD 301

Query: 315 RAIEQLNDERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNI 374
           +A+E+LNDERNWRKGLRVR L+R SPKSVLKNR++ FD +L +D+ PS  S E+SP  ++
Sbjct: 302 KAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNRRN-FDGILIDDELPSYESGEDSPRLHL 361

Query: 375 NDLNVDCNKS-------WGRGRGKGRGR-----IHGNLDRSYSLPVTSSLQTSGQVLSEA 403
            +  +D +         WG+GRGKGRGR       G   RS+ + +  SL        E+
Sbjct: 362 TESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHES 421

[Close]

BLAST of Cucsa.085300.3 vs. TAIR10
Match: AT2G43970.1 (AT2G43970.1 RNA-binding protein)

HSP 1 Score: 217.6 bits (553), Expect = 1.4e-56
Identity = 135/361 (37.40%), Postives = 199/361 (55.12%), Query Frame = 1


Query: 104 SKHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLST 163
           SK    E+  QKIV QVEY  SD++L   + L + I KDP+GYVPI +++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 164 NNNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKI 223
           NN+ +   L++S++L VS DGK+VRR  P T+   EEL +R +VAENLPE+H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 224 FSVVGSVKTIRICHPPES---------NPCCSKGELFVSNKLHALVEFETAELAERAIEQ 283
           FS VGSVK IR C P  +         +   S G LF SNK+HA VE+E  ELAERA+ +
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLF-SNKVHAFVEYEIVELAERAVTE 364

Query: 284 LNDERNWRKGLRVRPLVR---RSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNIND 343
           L++  NWR GL+VR +++   + PK      +   D+ ++ ++  +  S E+ P++  +D
Sbjct: 365 LSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTS-EQQPIEKQSD 424

Query: 344 LNVDCNKSW---------------------------GRGRGKGRGRIHGNLDRSYSLPVT 403
              DC+  W                           GRG+G+GRG+ H N +++ +    
Sbjct: 425 ---DCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHN 484

[Close]

BLAST of Cucsa.085300.3 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 169.1 bits (427), Expect = 5.8e-42
Identity = 110/313 (35.14%), Postives = 167/313 (53.35%), Query Frame = 1


Query: 110 EEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIV 169
           +E+ QKI++QVEY  SD +L  ++ L   + ++  G+VPIS +++  K+K L+ ++  IV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 170 QALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGS 229
            AL+ SS LVVS+D K+V+R  P  +    ++   TV+ ENLPE+HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 230 VKTIRICHP--PESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRV 289
           +K++ IC P   E +    K E F+  +LHA VE+ET E AE+A   LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 290 RPL--------VRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDL------- 349
           + L         RR  +  +   K     V D+          E     ++         
Sbjct: 281 KLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPADDD 340

Query: 350 --NVDCNKSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPD 404
             N   +K+  +GR  G+GR   +   +     T+S  +         SK     PRMPD
Sbjct: 341 GGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSK-RPPGPRMPD 400

[Close]

BLAST of Cucsa.085300.3 vs. TAIR10
Match: AT4G32720.1 (AT4G32720.1 La protein 1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 1


Query: 109 SEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSL-----ST 168
           +EE  + +++QVE+  SD +L  ++ L K +++  DG V ++++ S  K++       S 
Sbjct: 7   TEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSK 66

Query: 169 NNNF-------IVQALRSSSRLVVSSDGKRVRRKVPFTDKDK--EELLARTVVAENLPEN 228
            ++        +   LR+SS L +S DGK+V R       +   E+L ARTV A     +
Sbjct: 67  GDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSYD 126

Query: 229 HSHHNLEKIFSVVGSVKTIRI-CHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIE 275
               ++E  FS  G V ++R+  H  ES        +F      ALVEF T E A+  ++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAES-------RIFSG---VALVEFPTEEDAQNVMK 177

[Close]

BLAST of Cucsa.085300.3 vs. TAIR10
Match: AT1G79880.1 (AT1G79880.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.3e-06
Identity = 37/145 (25.52%), Postives = 72/145 (49.66%), Query Frame = 1


Query: 109 SEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNF- 168
           +EE  +K++ QVE+  SD +L  +  L + ++K  DG V + ++ S  ++++L    N  
Sbjct: 6   NEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNIN 65

Query: 169 -----------IVQALRSSSRLVVSSDGKRVRR--KVPFTDKDKEELLARTVVAENLPEN 228
                      +   LR+S  L VS++G+R+ R  K+   ++  E++  RT+ A     +
Sbjct: 66  REDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPFEYS 125

Query: 229 HSHHNLEKIFSVVGSVKTIRICHPP 240
               ++   FS    V ++R+  PP
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRL--PP 148

[Close]

BLAST of Cucsa.085300.3 vs. NCBI nr
Match: gi|778669150|ref|XP_004153773.2| (PREDICTED: la-related protein 6C [Cucumis sativus])

HSP 1 Score: 820.1 bits (2117), Expect = 1.8e-234
Identity = 414/423 (97.87%), Postives = 414/423 (97.87%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60
           MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP
Sbjct: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60

Query: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120
           VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180
           EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180

Query: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240
           SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE
Sbjct: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300
           SNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK
Sbjct: 241 SNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300

Query: 301 NRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN---------KSWGRGRGKGRGRI 360
           NRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN         KSWGRGRGKGRGRI
Sbjct: 301 NRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCNSEENSTSLKKSWGRGRGKGRGRI 360

Query: 361 HGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPLVNR 415
           HGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPLVNR
Sbjct: 361 HGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPLVNR 420

[Close]

BLAST of Cucsa.085300.3 vs. NCBI nr
Match: gi|700206619|gb|KGN61738.1| (hypothetical protein Csa_2G235610 [Cucumis sativus])

HSP 1 Score: 807.0 bits (2083), Expect = 1.6e-230
Identity = 414/446 (92.83%), Postives = 414/446 (92.83%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60
           MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP
Sbjct: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60

Query: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120
           VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRL-- 180
           EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRL  
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVS 180

Query: 181 ---------------------VVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH 240
                                VVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH
Sbjct: 181 SVVEHSVLYSLLIIDQYLVPKVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSH 240

Query: 241 HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 300
           HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND
Sbjct: 241 HNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLND 300

Query: 301 ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN 360
           ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN
Sbjct: 301 ERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN 360

Query: 361 ---------KSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRM 415
                    KSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRM
Sbjct: 361 SEENSTSLKKSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRM 420

[Close]

BLAST of Cucsa.085300.3 vs. NCBI nr
Match: gi|659118627|ref|XP_008459218.1| (PREDICTED: la-related protein 6C [Cucumis melo])

HSP 1 Score: 792.3 bits (2045), Expect = 4.0e-226
Identity = 402/424 (94.81%), Postives = 406/424 (95.75%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60
           MAQLNPEEKFSENHSEME NQEAI NS+SDGSSNSSLANLAFRFNAQAPEFFPRTQ QMP
Sbjct: 1   MAQLNPEEKFSENHSEMEVNQEAITNSDSDGSSNSSLANLAFRFNAQAPEFFPRTQPQMP 60

Query: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120
           VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV
Sbjct: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120

Query: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180
           EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV
Sbjct: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180

Query: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240
           SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE
Sbjct: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300
           SNPCCSKGELFVSNKLHALVEFET +LAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK
Sbjct: 241 SNPCCSKGELFVSNKLHALVEFETVDLAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300

Query: 301 NRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN---------KSWGRGRGKGRGRI 360
           NRKSEFDSVLDEDDSPS VSVEE+PLQNINDL VDCN         KSWGRGRGKGRGRI
Sbjct: 301 NRKSEFDSVLDEDDSPSSVSVEETPLQNINDLIVDCNPEENSTSSKKSWGRGRGKGRGRI 360

Query: 361 HGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSK-PLVN 415
           HG+LDRSYSLPVTSSLQTSGQVL EASSKLTTKSPRMPDGTKGFTMGRGKPLSSK PL N
Sbjct: 361 HGHLDRSYSLPVTSSLQTSGQVLCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPPLFN 420

[Close]

BLAST of Cucsa.085300.3 vs. NCBI nr
Match: gi|225428701|ref|XP_002281817.1| (PREDICTED: la-related protein 6C isoform X1 [Vitis vinifera])

HSP 1 Score: 483.0 bits (1242), Expect = 5.1e-133
Identity = 248/422 (58.77%), Postives = 310/422 (73.46%), Query Frame = 1


Query: 1   MAQLNPEEKFSENHSEMEANQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMP 60
           MAQL  EE+   N    E         E   SS ++ A  +F+FNAQAPEF PR+ TQ+P
Sbjct: 1   MAQLKREEQEMVNQETAEM--------EKKESSTTTSAAASFKFNAQAPEFVPRSHTQVP 60

Query: 61  VTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQV 120
           ++GYF+P FH LGGG  S+DW ++ DQ+P + I N N  LPN SK+  + +IQQKI+KQV
Sbjct: 61  ISGYFYPCFHLLGGGAGSADWLYVADQDPVHFISNSNGSLPNSSKNLLTHDIQQKIIKQV 120

Query: 121 EYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVV 180
           EYQ +DMSLLA+++LAKHI+KDP+GYVPIS+++S+KKVK+L +NN  + QALRSSS+LVV
Sbjct: 121 EYQFNDMSLLASDSLAKHINKDPEGYVPISVIASSKKVKALVSNNQLLAQALRSSSQLVV 180

Query: 181 SSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPE 240
           SSDGK+VRRK  FT++DKEEL A TVVAENLPE+HSH NL+KIFSVVGSVK IRICHP E
Sbjct: 181 SSDGKKVRRKHLFTERDKEELQAHTVVAENLPEDHSHQNLQKIFSVVGSVKNIRICHPQE 240

Query: 241 SNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLK 300
           SN   SKG+ F+SNKLHALVE+E+ E+AE+A+E LNDERNWRKGLRVR L+RRSPKSVLK
Sbjct: 241 SNNSRSKGDFFISNKLHALVEYESVEIAEKAVEMLNDERNWRKGLRVRMLLRRSPKSVLK 300

Query: 301 NRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN---------KSWGRGRGKGRGRI 360
           NR+SEFD ++DE++ P P   E+S   N  +L ++ N         K W RGRGK RGR 
Sbjct: 301 NRRSEFDGIMDEEEGPHPEFSEDSSHPNNTELVIESNAEENSSGSKKGWARGRGKPRGRT 360

Query: 361 HGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPLVNR 414
                R    P   S Q+SG    EAS+K  TK PRMPDGT+GFTMGRGKP+S+  L + 
Sbjct: 361 QITSGRGLLAP---SPQSSGSNQFEASAKQITKGPRMPDGTRGFTMGRGKPISTPALASP 411

[Close]

BLAST of Cucsa.085300.3 vs. NCBI nr
Match: gi|1009115434|ref|XP_015874228.1| (PREDICTED: la-related protein 6C [Ziziphus jujuba])

HSP 1 Score: 474.9 bits (1221), Expect = 1.4e-130
Identity = 235/380 (61.84%), Postives = 297/380 (78.16%), Query Frame = 1


Query: 42  FRFNAQAPEFFPRTQTQMPVTGYFHPYFHFLGG-GPASSDWFFIGDQEPA-YLIPNPNIQ 101
           F+FNAQAPEF PR+QTQMP++GYF+P FH LGG G A+ DW ++GD  P+ + I NP   
Sbjct: 23  FKFNAQAPEFVPRSQTQMPISGYFYPCFHLLGGSGTAAPDWIYVGDHNPSPFFISNPTSA 82

Query: 102 LPNFSKHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVK 161
            PN SK+  S+++Q KI+KQVEYQ SDMSLLANE+L KHIS+DP+GYVP+S+++STKKVK
Sbjct: 83  QPNCSKNVLSDDLQNKIIKQVEYQFSDMSLLANESLMKHISRDPEGYVPVSVIASTKKVK 142

Query: 162 SLSTNNNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHN 221
           SL+ N++ +VQALRSS +LVVS DGK++RRK PFT+KDKEEL +RTVVAENLPE+HSH +
Sbjct: 143 SLTNNHHIVVQALRSSLKLVVSDDGKKIRRKHPFTEKDKEELHSRTVVAENLPEDHSHQS 202

Query: 222 LEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDER 281
           LE+IFS VGSVKTIR+CHP ESN   SKG+ F+SNKLHALVE++T E+A++A+E+LNDER
Sbjct: 203 LERIFSAVGSVKTIRVCHPHESNSSRSKGDFFISNKLHALVEYQTMEMADKAVEKLNDER 262

Query: 282 NWRKGLRVRPLVRRSPKSVLKNRKSEFDSVLDEDDSPSPVSVEESPLQNINDLNVDCN-- 341
           NWRKGLRVR L+R SPKSVLKNRKS+FD +LD+D+ P+P S E+S   N  DL ++ N  
Sbjct: 263 NWRKGLRVRLLLRCSPKSVLKNRKSDFDGILDDDEPPAPDSPEDSSQPNNIDLVIESNAE 322

Query: 342 -------KSWGRGRGKGRGRIHGNLDRSYSLPVTSSLQTSGQVLSEASSKLTTKSPRMPD 401
                  K W RGRGK RGR   +  R    P     Q++  + SEAS+K ++K PRMPD
Sbjct: 323 ENSGGSKKGWARGRGKARGRSQNHSGRGLLAPTP---QSNSIIQSEASAKQSSKGPRMPD 382

Query: 402 GTKGFTMGRGKPLSSKPLVN 411
           GT+GFTMGRGKPLS+  L N
Sbjct: 383 GTRGFTMGRGKPLSTPTLAN 399

The following BLAST results are available for this feature:

BLAST of Cucsa.085300.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP6C_ARATH	1.4e-109	49.55	La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1	[more]
LRP6B_ARATH	2.5e-55	37.40	La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2	[more]
LRP6A_ARATH	1.0e-40	35.14	La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1	[more]
LARP7_MOUSE	2.4e-21	38.15	La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2	[more]
LARP7_RAT	3.1e-21	38.15	La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2	[more]

BLAST of Cucsa.085300.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIU3_CUCSA	1.1e-230	92.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G235610 PE=4 SV=1	[more]
D7TPP1_VITVI	3.6e-133	58.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01050 PE=4 SV=...	[more]
A0A061DZS6_THECC	6.3e-130	58.49	RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007000 PE=4 SV...	[more]
M5VJI3_PRUPE	1.2e-128	60.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024894mg PE=4 SV=1	[more]
A0A061E1L4_THECC	1.6e-128	58.35	RNA-binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007000 PE=4 SV...	[more]

BLAST of Cucsa.085300.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19090.1	7.7e-111	49.55	RNA-binding protein	[more]
AT2G43970.1	1.4e-56	37.40	RNA-binding protein	[more]
AT5G46250.1	5.8e-42	35.14	RNA-binding protein	[more]
AT4G32720.1	1.2e-10	29.28	La protein 1	[more]
AT1G79880.1	1.3e-06	25.52	RNA recognition motif (RRM)-containing protein	[more]

BLAST of Cucsa.085300.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669150\|ref\|XP_004153773.2\|	1.8e-234	97.87	PREDICTED: la-related protein 6C [Cucumis sativus]	[more]
gi\|700206619\|gb\|KGN61738.1\|	1.6e-230	92.83	hypothetical protein Csa_2G235610 [Cucumis sativus]	[more]
gi\|659118627\|ref\|XP_008459218.1\|	4.0e-226	94.81	PREDICTED: la-related protein 6C [Cucumis melo]	[more]
gi\|225428701\|ref\|XP_002281817.1\|	5.1e-133	58.77	PREDICTED: la-related protein 6C isoform X1 [Vitis vinifera]	[more]
gi\|1009115434\|ref\|XP_015874228.1\|	1.4e-130	61.84	PREDICTED: la-related protein 6C [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.085300	Cucsa.085300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.085300.3	Cucsa.085300.3-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.085300.3.CDS.10	Cucsa.085300.3.CDS.10	CDS
Cucsa.085300.3.CDS.9	Cucsa.085300.3.CDS.9	CDS
Cucsa.085300.3.CDS.8	Cucsa.085300.3.CDS.8	CDS
Cucsa.085300.3.CDS.7	Cucsa.085300.3.CDS.7	CDS
Cucsa.085300.3.CDS.6	Cucsa.085300.3.CDS.6	CDS
Cucsa.085300.3.CDS.5	Cucsa.085300.3.CDS.5	CDS
Cucsa.085300.3.CDS.4	Cucsa.085300.3.CDS.4	CDS
Cucsa.085300.3.CDS.3	Cucsa.085300.3.CDS.3	CDS
Cucsa.085300.3.CDS.2	Cucsa.085300.3.CDS.2	CDS
Cucsa.085300.3.CDS.1	Cucsa.085300.3.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.085300.3.three_prime_UTR.1	Cucsa.085300.3.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.085300.3.five_prime_UTR.1	Cucsa.085300.3.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 209..277 score: 8.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 205..288 score: 0.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 204..292 score: 10
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 116..173 score: 1.5
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 110..190 score: 1.6
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 106..197 score: 23
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 108..189 score: 2.2
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 106..193 score: 2.9
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 190..288 score: 3.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 190..299 score: 2.85
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 16..404 score: 1.3E
None	No IPR available	PANTHER	PTHR22792:SF62	LA-RELATED PROTEIN 6C	coord: 16..404 score: 1.3E