Cucsa.084000.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.084000.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00858 : 674214 .. 674843 (+)
Sequence length630
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTACTATCTTtCTTCAAGTGGCCGGTTTACTTTTTTTTTTttAAGaGAAATCAagTCATGGCTGCCGCTGGAATTGGACAACCTTCGATCGTGATTGGTACCTGGAATGCGATACCGAATGACGATCCAAAAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTcTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGgTTTTtATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAATGATGCAATGATGATGGATGCATCAATGATCTACAATCTCAACAAATTATCTACTCTCTCTCACTTGTTTATGTGTATGCATGTTATACATGCAATTGGAATGAAAAGTAGTACAAATTTAGATAAAATAAAAGTATAAAAAGCAGGTATGCTTTTGGTGTGTTTTCATCTAAATTCTCTCTCGTTTTAATTTATCTAGACCCAAAATTGAGACAGATTCAAAATCTAGAATTACGCCCACATGATGACTTCAACATTTTCTTGCAC

mRNA sequence

TATTACTATCTTTCTTCAAGTGGCCGGTTTACTTTTTTTTTTTTAAGAGAAATCAAGTCATGGCTGCCGCTGGAATTGGACAACCTTCGATCGTGATTGGTACCTGGAATGCGATACCGAATGACGATCCAAAAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTCTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGGTTTTTATAGCACCATTGTGATGGAAAATACATCCAAAAATGTGAAGCAGGTCGTATCTTTTGTTCCTCTTCGTTAATGATGCAATGATGATGGATGCATCAATGATCTACAATCTCAACAAATTATCTACTCTCTCTCACTTGTTTATGTGTATGCATGTTATACATGCAATTGGAATGAAAAGTAGTACAAATTTAGATAAAATAAAAGTATAAAAAGCAGGTATGCTTTTGGTGTGTTTTCATCTAAATTCTCTCTCGTTTTAATTTATCTAGACCCAAAATTGAGACAGATTCAAAATCTAGAATTACGCCCACATGATGACTTCAACATTTTCTTGCAC

Coding sequence (CDS)

ATGGCTGCCGCTGGAATTGGACAACCTTCGATCGTGATTGGTACCTGGAATGCGATACCGAATGACGATCCAAAAGTAATAGAGATGGCAGAGTATGCAGTGAAAGAACAGGGAGAAGAATTGATCCTGAACAGTGTACAAGCTGGACAGATCGTTGAGGTGTTcTTGAGTGGCGACACTTATTACAACCTTCTCATCCTTGCTCATCATCCTCACACATTTCAGGGgTTTTtATAG

Protein sequence

MAAAGIGQPSIVIGTWNAIPNDDPKVIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDTYYNLLILAHHPHTFQGFL*
Homology
[Close]
BLAST of Cucsa.084000.1 vs. NCBI nr
Match: gi|778722369|ref|XP_011658473.1| (PREDICTED: uncharacterized protein LOC105436020 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MAAAGIGQPSIVIGTWNAIPNDDPKVIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDT 60
          MAAAGIGQPSIVIGTWNAIPNDDPKVIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDT
Sbjct: 1  MAAAGIGQPSIVIGTWNAIPNDDPKVIEMAEYAVKEQGEELILNSVQAGQIVEVFLSGDT 60

Query: 61 YYNLLILAHHPHTFQGF 78
          YYNLLILAHHPHTFQGF
Sbjct: 61 YYNLLILAHHPHTFQGF 77

[Close]
BLAST of Cucsa.084000.1 vs. NCBI nr
Match: gi|449467398|ref|XP_004151410.1| (PREDICTED: uncharacterized protein LOC101213950 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 1  MAAAGIGQPSIVIGTWNAIPNDDPKVIEMAEYAVKEQGEE-LILNSVQAGQIVEVFLSGD 60
          M  AG G PSIVIG+ N I  DDPKVIEMAEYAVKEQGE+ LILNSV  GQIV VFL G+
Sbjct: 1  MDTAGFG-PSIVIGSCNPILKDDPKVIEMAEYAVKEQGEDHLILNSVADGQIVTVFLGGN 60

Query: 61 TYYNLLILAHHPHTFQGF 78
          TYYNLLILAHHP TFQGF
Sbjct: 61 TYYNLLILAHHPRTFQGF 77

The following BLAST results are available for this feature:
BLAST of Cucsa.084000.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722369|ref|XP_011658473.1|4.2e-36100.00PREDICTED: uncharacterized protein LOC105436020 [Cucumis sativus][more]
gi|449467398|ref|XP_004151410.1|2.7e-2278.21PREDICTED: uncharacterized protein LOC101213950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.084000Cucsa.084000gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.084000.1Cucsa.084000.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.084000.1.five_prime_UTR.1Cucsa.084000.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.084000.1.CDS.1Cucsa.084000.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.084000.1.three_prime_UTR.1Cucsa.084000.1.three_prime_UTR.1three_prime_UTR