Cucsa.079810.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079810.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold00793 : 2660524 .. 2672222 (-)
Sequence length	3243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCACCTTTCTTCACCCATTCGCATCTGAGCTCTCTCAGTCGCCGTCCGCCGCCGTCGCAGGTCTCAATCGCCCTTCGACGTTCGCCGTCGAAACTGGTTTTTATTGGATTTCAACTGGTCGTCCTCTTCTTTCTTTGAGTTTTGTGGTTACTTCTTCCTTTTGCGACTGTGGATTTTGGGTTTTTATTGGGTGATTGCACACCGTCCAGCTCCACCTTTATCTCTCTCTGTTCTGTCTCCTTAAGAATCAAGTCGTGTGATTGTTAGATTCCCAATTCCACTCCAACATCTATTCGCCATTTCAGGCCTCAATTTTTTCGGACCATTTAGACAAATAGAGAAATGGGGTTGGGTTAAAATGGGGATGCTAAGAGGAAATTAGGATGAACTTAGAGGAGGAAAACAGAATTCAGTGAAGACGATGAATGTGCAGCAACTTCCGAGAAGAGGAAAGAGGGAGGAAGCCTTTAGTTTATTCTAACAGAACAAATCCTATTTCTACACCAACTGTATTCGGCTGCAGAGCAAGAATATTGCACTTATGGCTTTGTTCGCACTGCCATTTCATTCGGAATCTTGTCTTTAATAAGCTTTTGTCGCCGTCTCTGCTGGGAAGACAACAATGCACAGGCATGTAAAATTCTTTCCGGGTCATGGTAGTAGTTACAGATGCCCTAACCTCATTTCTACTTTGCATTTTCCTCAGGGCAAGCTTTCGTTTGGGATCAATAGCTGACTCGATATATAGATTCAAGCCGCACGAACATGTAAGCATTTTTAGTTCGGAAGTATCAAGCATGGCTGGATTTTATAAATTTGTTTTTTTTAAAATCTTGAAAGACAATGAAAAAGTGTAGGGAGCTCACTTGAGAGGTTATCTGATTCAGTTAATGCGTAATTTTTCTTTGAAGAATTGCTAAGCATGGCAGTTGTTCAATGAACTTATATTTGGTTTAGCGTTTGTGCAAAATATTTATTGATTAGTGGCCATCATGGTTTCAACAAAATGTAGTAGGGTCGTGTAGTTGTCTCGTGAGATTAGTTATTGCCTCAAAACTAGCAACATAGGAATTCCTGTTGAATTTTGTGAGTTGTTATTTATTCTCCTTACTACTATCAACAGGTGCGAAAACAGGATGCAAGCAAATTGGTATTCCATCGGGCGCTTCTCATCTCCAGTGGTAATCTATTGAAAATAAGTTGTTTGAATACTTCATGTCTTTCGAAATGAGTGTTTCAATTGTTTTTCTTTGGCATAGTAAATGTAATTGGTCTTATTACATTTGTTTACAAATTACAAATTTGGAAAATAGTTTGTTAATAGGCTATGTTTTCTGTCAGAACATACAGTTAAATTTCTTGTACGACATGAATATATGAATCATAATGGTGTAGTTTTTTGAAATCTTCAACTCATGTGGAAAATGACATATTAATGTTTCAGTGTAGGTAGTGAAATTTGGGGAAATGGAGCAGAGTCAACTGCATTCATGCAGATGCAGATTGTCAATGCACTTCGTCTGGGTGATAGAAGTAGGGCATCCAACCTGCTTATGGTTCTTGGCCAGGAAAAGTTCTCTTTAACTGCAGATAATTTTGTTCGCATTTTGAGTTACTGTGCAAAATCCCCTGATCCGCTGGTAGGTTTTTTGTTCTTTGTTATCCTCTATTGCATCTCAAGGTTATAATTATTATTATTTTAAATTTACGGGTGTTGAGAAAGCAAAATTTGTTTGTATATTTATCCATTATGATTCAATATTACTGTGAATAAGCTAGAAACGGATTATGCTAGCTAGCATTTACCCATTTCAGTGGCTAGACCAGTGAAAAAATGAATTGAAGGTCTAGAGTTTATACTGTACATAAGTATTTATTTGCAACTGTGTGCATTGCATTGTAATTATACTGTATGCACTTGTGAACATTGAATCATAATGTCCCAGCAAAAACATCACGCAGCCACAAGAATCACATAAACACATAAAATGTTTGGAAGAAGTTAAACTCTTCTTATTGATACTAGTAGAAAGTGGCTATAAATGGGAACTAAAGCTCAGTATTCATAAGACAACTCTTACTCACCCATTTCCTTGATGATACCTGTCCAGTTTCTGTTAAGATTCTAAACCTGAAACTCAATAAGATCTCAACTTACCAAGTAGAGACAATACTGTGCTGTAATGTATTAATAAAACGATCCAAGATTTCCAGACAAACAAGAATACAAAATAACCAGATGACAGGAATAGTAAAAGAAAAATCCAGCTCCTTTAAGAATAGCCGGAAACTTCTCCTAAAAGCTTATAACAACTTTCACCCCAAAATCGAGACCTAGTTTTCATACCTAAAACATTCCTCATTTATGTCTATGTCTCCAGTGGGCCCTCGGGTGTTTCTTTCCCTCTCTCCTTAGCTCTCCCTTGACATATTCCGTGAGTTTCCCTTTTTACCCTTTCTTTTATATGTATGAAGGAATGGAGATCTAACATTACCACACGCCTCGAAATGCACCTTGTCCTTAAGGTGGAAGGAAGGAAATTGTTAGTTCATCAAGTACATTGATTCCCAAGTCTTTTCACTATTCGGAAATCCCTTCCCCTTGTCCGACCATTCATTTACTGCTAATTCTCTACTCCCTCTTACCCATAGAACTGTTTTAGGCCTCAATCGTAATTCGAATTCTTCGGTTACGGCTGGAGGTGTGTATTGAACTCATTGATTCTGCCTCAATTCCAGCTTCAATTGTGACACATGGAACACATCATGGATGCTTGCTTCCGGTGGTAACTCGAGACGATAAGCTACTGCCCATATCTTTCCGGTATAATATGGCCCATAGAACTTTGGTGTTGGTTTTTCACTTCTCTTTCTTGCTAATGATCGTTGCCTGTAAGGTCCCAACTTTAAATACACTTCTTCCCCTTGTTTGAAATTCATCTCTCTTTATGCGAATCTATCTGCTTCTTCATCTTACTTTGTGCAAGGAGAACATCTAGTTTGAACCCTGAAGGATCAGTTTTGCTCACAAAGGTACTGCGATATTGGGTGAAGTCAGTACTTTGGCTAAAAGTGGGGGTTGCCATGTCTTCATTCTTCTTGACAAACCTCCCGTAATATCCCTTCAGCCCCAATAATCCTCTCAATTTTGATTCATTCTTGGGTGTGGTCAATTTATCATAGCTCTGTCCTTCTCCCCATCGGTTTCCACCCTTTTTTGCGCGATCCACTGTCCTAAGTGTTGTATTTTGAAATGGCCGATAACACACTTCTTATTTTCTACACATTTCTTTTAAAGCTTATACGACACAATGACTTGATTCCACTTGCAGTAATCTACACAAATGCACCACCTCCCCTCCTTCTTCTTAACTAAAAACACTTAACTTGAGTAAGGGTTTCTCCTTGGCTTAATGATTTATGCTTGCCACCTTTTGATTTCCAATTTCTCACTCTCCCCTTCTTGAATGTACCCATACCTATAGGGTCTCACGATGATGGTTTTTTTCCTTCCCACACGAGAATTCGATGGTCAGCTTTTGAGGTAGCCTTCTAGGTGTGTCAAAGATATTATCATACTGCTTTAGGAGAGCTTGTATCACGTGCAACCATTCTTCGTCCCCCCCTTCCCGAATCTTGTTTCCAGTCTTCTCTTCTTCCTCAACCTCAATTCACGACCCCTGTTCTTCCTCCTTCCCAACCTTCATCAAGCTTCTCAATGAACACTCAACTGTAGTCAAGGTCGAATTCCCCCTGAGCACAATGGGTTGGTTTTTAATTGCAAATGACTTCGGCGGCCAATGTATCCCCATCAATCCCGTCGAGCACAACCATGTTATTCCTACTACTACATCTCTCTTTCCCAGATTAATGGCTAGGAATTTTACGTGGATGGTTATTTTGAGAAGTTTCAGTTCAGTTCTTCCGCAGATTCCTTCCCCTTCAACTGTCGTAATAACTCCCATAGTTACTCCAAATACCGAACCTCTAGTGATGGGTAGTTTGAGTTCCTCTACAATCTTTTGTTGTATAAAATTGTGAGTTGCACCATTATTAATCTAAAGGATTACGCTCCTCCCTTTAATCGTTCCTTTCAGCTTAATCGTTCCCATTTTTTCAATTCCGTGGATGGCTTGCAGAGCGATTTCCTTATCATCACCAACCTCCATCATCTCTAGCTCTACAGTTCCGTTCACCCCATGTCGGTATCAAATCCCTCTTCAAAATCCTCTTCCTCGTTTGTGAAAAAAAACATAAACTCCCTATTTTCTCTCACCTTACACCCATGGTCATGCAACCATTTTTCGTTGCACCGTAAACACAACTCCTTATCTAGTCGTGATTGAAGCTTACTATCGAACAACTGCTTGATTGGAGTTTTTTTTTTCGTGTAATTCCCTCACATGGGTATAATAATCTGCCGTGTATGGGTTTCTCTCCCTTTTACCCCGTTTCTCTCCGTGTAATTTTGATGGGTTTTGGAGAATTGGGTTTCCCTCCTACCCAGCCCATGGGCTCCCCATTCACTAAGCGCCAATTTTAGGGCAATTTTTTAGTCATTCATTAGTTTGATCTCCCTCATACCATCTTCCAAAGTTCCCGGATAACGGCTCACCAATTTCGCTTGCAACTCTGGTTCCCGCTCGTCTTGTGTGATCCTAATTAGTCGAACTCGCCAACTTCTTTCGTCGAGAAATTTGAAATGCTCGCACAACTTCTGTTTCAAGTCTTCTTCTACCCATATCATCTTACGATTGTTACTCTGACAGGACAAACTTACTTCATCTTGAGCGAAGTCTACCATGATAACCTTGATTTTCTCCACCACTGTTGAGTCATTGATCTCGAAGAAATACTTATCTTTGCATAGCCCGAATTCTCGATTCACTCCATTGAAGACGGACCTTTCCAACTTCTTATATTTGCTCTTATCCACCGTCTTAGGTTTGGCCATCGAAGGCGTTTCTAACTCCTTTTTCTCTTTTGTCTTGCACACCGAAACGTTAGATGCTTCTAACTCTTCTTTTCTCCTACTTGCCACACACTTATTCATCTCTTCAGCTAAATGGTCCTCACTCTCCTTTTGTCCGAGAATGATTTCCTTGAGGTCTATAACCAGCCTTTCAGTTGATTTGATTCTTTTTTCAAACTTTTTTTGATCCATGGAATGCGTCCTTCCCAGGATGATTGGCTCTCATACTAATTTGTTAAGATTCTAAACCTGAAACTCAGTAAGATCTCAACAAAAGGATCAAATAGAGACAATATTCTGCTGTAATATATTAATAAAATGATCCAAGATTCCCAGACCAACAAGAATACATAATAACAAGGAATATAGATAACCGGATGACAGGGATAGTAAAAGAAAAATCCAGCTCCTTCAAGAATAGCCGGCAACTTCTCCTAAAAGCTTATAACAGCTTTCACCCCAAAATCCAGACCTAGTTTTCATACCCAAAACATTCTTTATTTATATCCATGTTTCTAGTGGGTCCTCAGGTGTTTCTTTCCCTCTCTCCTCAGCTCTCCCTTAGCATATTCCGTGAGTTCCCCTTTTTACCCTTTCTTTATATGTATGAAGTATTGGAGATCTAACAGTTTCCTCCTCTCTTTACATTACTCTGCCACCACAACTAATTCACTCTCCACCTTGAAACTAGGAAATTGCATGTCTTACTAGCATTGGAACACGAATGATGACAGCCTTATTACTTTCTATAAACTGATGAGTGTGCTGAAGCCTAAGGCTATATATATGTGTGTGTGTATTTTCTTGCAGTTTGTCATGGAGACTTGGAAAATAATGGAAGAAAGAGGAATTTTTCTGAATAACACATGCTCCTTACTTATGATAGAAGCACTCTGTAAAGGGGGTTACTTGGATGAGGTATAAACATATAATCTACACTGAGGTTGTATGCAATCTTTTGGCCACACATCCAGTTGTAGTAATAACAATAATTTTCTCCTGTTGGAATGATACAGGCATTTGGTCTAATAAATTTCCTAGCAGAAAGTCATGTGATGTTCCCTGCTCTGCCTGCGTACAATTGTTTCTTGAGAGCCTGTGCCATAAGGCAAAGTATGGTTCATGCTAGTCAATGTTTGGATCTTATGGATCACAAAATGGTTGGGAAGAATGAAGCTACATATTCTGAGCTACTCAAGGTCTGCAAGGAGCCTGATTCCTTATCATTTTTATAAACATTATTTCAAGATTTCTTTTGAACTAGTGATCATCATGATGATACTTGGAAGTTCTCTTATGATATTATTTCTACACCAAAATTGGATCAGTCATAGGCATCTCACTGTCAATCTTACTGGTAAAAATAAATTAAAATTTGATGGAGATACGATTCTAAATTTTGAAGTGTATACGTAACATTCCATGCACTTTTGTTTAGTGTGATAAGAACATATTGATACATGAAGTGCAGTACCTTTACAGAATAAAGTGGATCGTGGGATAGGTTCTAGTAGTCATTGATCTCTTCAAAACACTCTCCTGTTTCAATTGCATGAGTCCTTTTGACAGGAAGGTTCTGTTTTAGGAGAATTATTATATCATATATGTACCTATAAGTTAAGATGACCATCCTTTAAAACATATATGTAATGAATGAACACTAATCTTTCTTTTTTCAATCAGCTTGCAGTTTGTCAGAAAAACTTGTCTTCTGTGCATGAAATCTGGAGGGACTTTGTAAAAAATTATAGTCCAAGCGTTTCATCGCTGAGGAAGTTTATATGGTCCTACGCAAGGATGGGAGATGTGAAATCTGCATATACTGCACTGCAAAAGATGGTGACTTTGAATAATGGAGCCGCAGGAAGAAAGTTACAATCTTTGGACATTCCAATACCTTCAAGAACTGAACTTTATCGTTACAATTTTAATTTTGAGGAAAAAGAACCCTCTATTGATGAGTTTTTCTATAAGAAAATGGTCCCCTGGAATGGTGACGTAGGGGGGATTTCTGTTAGTGGTATAAAATGTGGAGAAGTTGAAACTGGTCCATTAACTGTGCCAAACAATCACAAAAGCAGTTTTGTAAGGAAGGTTTTGAGATGGTCTTCCAATGATGTGATGCGTGCATGCTCTCTTGCTGGGAACTGTGGTCTTGCAGAGCAGCTAATGCAACAGGTCTTATTTCTTTCCTTCGAGATCATTTTTATTCAATGATACAGCCAGTTGGTACAAGAAATCTTGAATTGAGATAATATTTTTCATAATGTTATCTCTTGGTACCAAAAACTTTTACTTTTATAAACAAGTAATATATATTGTGTATATATATTTTCATAAAATAATGGGTTTCAAATGCTTTAAATAGTTGCCACTTTAAGTTATTTGGATTTTCTTGTTCTTGCTCAGATTTCATCATTGGTGAAATAATTTTTGTTATTTTATACGTTGTACCTTGTGTGAATATTTTTAGAGTTCATTTAGTTCCGTATTTCGTGTGTACTGATGAGACTCGGACATGTCTTTGAAGATGCATAAACTTGGATTGCAACCGTCATCCCACACATTTGATGGTTTTGTTAGATCAGTTGTCTCAGAGAGAGGTTTCAGTGCTGGCATGGAAATAGTAAGTTATTTGGGCTTTGATTAGATCTTGATTATCATTACAAGCTAATCTTTTGCATTCATTTTTTTATTTGTTTCATTTTTCAAGGAGTTTTTAATTTTTATTATGAGGCCAAATATTTATTACTCCCCTAAACGAAGAAACCCCTCTTTTCCAGTTAAAAGTAATGCAACAGAGGGGATTGGAGCCATATGATTCAACTCTTGCTGCTGTTTCAGTAAGTTGTAGCAAGGCGCTAGAACTTGATTTGGCTGAAGCTCTACTTGAACGACTTTCAGCTTGTCCTTACCCATACCCCTTCAATGCATTTTTTTCTGCATGTGACATGATGGTAAGTTGACCTTTTTTAAGTAAGAAATTGGCCTAAAATGGAGAAAAATGAAAGAATTTTCATGAGCATACAAAAAGAGTCCTAAACTACAAGAAAAACTTCATGACAAGAAGCTGATAATTACGAAATAAATCTGGTTAATAGAAGCCAGACACATTAAATCTGCACCCTTCCATGCCTCCTTCCAAGTCCTCTCAACCCCTCTAAAAATCCTATGATTCCTTTTGATTCACTCTCCAGAAAAAACCCTAAACCCTTGCCACCAGACTCTCCATTATTCTCAAAAGGGAGAATTCATTAGAATCTTCCAATTTAACAATTTAAGGCGTAGCTTCTTACTGTAATTGCTTCTCAATTTTCTGAGTTTGGTGTAATTAGACTATTCCTTATATGCTCCAAACGCAAAGCTGATGCTAAAACGCTACTCAGGCTCCTTCTAAATAGTTATATGCCAGCATTAAGTTTCTGACATAATTATTGTAAAAGCCCCTAAATATTTTTAATTCTGACTCATGGTTTGGATTTTTCTTTTGTTTCTTCTGAACTGGGTACTAGTGCATTGTGACACTAGAGGATATAAATTATAAATGCAATCAAGTTTATGGGCTACAAGGGAACTGTCCAATGAAAGATTTTATAGTGATATCTTAGTTTGTCTTCATATGTCCTATAGGACATTATTCGATCCAACTTCGATTGTGGGATCCTTATTGCAGGATCAGCCTGAACGTGCCATGCGTATGCTTGTTAAAATGAAACAAATGAAGGTGGCTCCAGATGTCAGGACCTATGAGCTTCTATATTCTTTATTTGGTAATGTGAATGCTCCATATGAGGAGGGGGACAATTTGTCACAGGTGGATGCTGCCAAAAGGGTACGCATGATAGAGATGGATATGGGAAAACATGGGATACAATATAGTCATTTCTCTATGATGAACTTGGTAAGACGACAGCTATCCTCTCTCTCTCTCTCTCTCTCCTCCTCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCTCCCCCCCCACCACAAAAAGGAATAAAATAAAGAGAGAGAAAAGAACTTGCAGTTGTGTTATGTATTGACTGATGATCCACATCTGACTAGAGAACATTGCAGGAAGTTGTCTACTTCCCTCACAAAATTTCAAGCAGAATTTGGTTCTCTTTTCGAAGTTTCTTTCATTTTTTCCTTGTACTAATTTATTGTTTGTTCAGCACTTTGAGGGAAGTGGATATGGTCACTTTTCAATTGGAGAATTGATTAACATTTAGGAAAAGGTTTTGATGAACTATGACGGATAAATCTGATTTTATGTCTTTTCAGATCCCATTTAGTGCTGTTGTAGAACCATCACTGTTTTTGTTGTACATAGTCCTGATTATGTGTACTAGCTAAGAAAAATAAAATGTGGTGGTTAACTGGCTTAGCCCTTTGAAGTACGATCATTAGCATTTAGCAGTTAGCACTACTATGTAACTAGAAAAGCATTAAGTTCACTCAAATTTATTGGGTGCACGGGTGCACCGTGCAGATTAAACTGTTTTTACTTTTTTACTTTAATTGTTAAATCTTTCTTCACTGCTTATGGAAATATTGTTGTTTCTATTTAACTTTGAGTCCATTTGTTCCTTTAGTTGAAAGCTCTAGGTACAGAGGGGATGAAGAAGGAGGTTCTTCAGTATTTAAATTTGGCAGAGAACCTCTTTTATTACAACAACACTAGTCTGGGGATGCCCGTTTATAACACAGTGTTGCATTTTTTGGTTGATTCCAAGGAAGTAAGTAATTGTGGTCATGCACTCTATTCTATTAAGCTATAGAGTTCCTCATTTGTGTTAAACAGATAGTTCTGTTCCATATTTTTGCAGACTCACATGGCAATAGAATTATTCAATAATATGAAGCGTTCTGGTTTCTTTCCAGATGCTGCAACATTTGAGATGATGTTAGACTGTTGTAGTGTGATCGGATGCTTGAAATCAGCTTTTGCTCTTCTTTCCTTGATGATTCGCTCAGGGTTTTGTCCACAGATATTAACTTATACGAGCCTAGTAAAGGTACCCAATGAATTTCTTATTGGTAGATACATATATATACATTACTCACTCCATTTATACTTCTAAAGCGTCCATATTGAGTTAACAGATCGTGGGCTTTCAATGAAATCACTTTGTGGACTATTAGCTATGCATTCATGTTTTCAGATTTATATGAGTTGTCAACCTGAATGTTTGCTGATGCTCTCATACACAAGTCTGAACACAAAAAGTCATGTTTTAAAGGGGAAGGGTCTGTAGAGAGGGAGAATTTCTATTAATGTTCTCTTTTGACAATACTATAGTTTGGCTAATTTACAAGTCATTGTACGGTTTGAACCGTCCATGAAATTTTTGTTGGGCTAGTGCTATGGCGGTTGACGCCCATGGTTCGGACTTAATTTATTTTGTATTCATGTATATCTATTCTTGACACAAATGAACCATCCTAGTAGCTTCGAGGTTAACCTACTGGAGGATGCAATGTTAAATTTTCCATAAGTTTCCATATCAATTATTACCTATTAATACTTTCTTATTGTTAGTCTTGTCCTTTATCATTCAAAATATTTAACGTTTGGATTATTCCGATACAGATTGTGTTGGGATTTGAGAGATTTGATGATGCCTTGAACCTTTTGGATCAAGCCAGTTCAGAAGGGATTGAACTTGATGTCATTATAATGAATACAATCATGCGGAAAGCTTGTGAAAAGGTACCTCCCATGGCCTTGTGTCACACTTGGTAGTATTTGCTCTTGTTGGTTTTACACATTTTGACATTCTTGGAAGTCTTGGTGTACCTGTAAACCATATTTTGTTATTGAATGCCTTTGTGATTAGTGATACATGTGCTAAACAATTTCATTTTGTTGCTCTTTCTCGAATTGGATATTAGGCAAGGATTGATGTTATTGAGTTTCTCGTTGAGAAGATGAACCGTGAAAAGATCCCACCCGACCCTTCAACTTGTCAAAATGTCTTCTCTACATATGTGAACCTCGGTTATCACAGCACTGCCATGGAAGCACTGCAAGTACTGAGCATGCGCATGTTATTATGCGAAGAAGATGATGCCTCCGTGACAGAATATATGGAAAACTTTGTGCTTGCAGAAGACACCGGAGCCGATTCACGTATTGCGGAGTTCTTCAAATGCTCTAGAGAGTACCTGAGTTTTGCTCTCTTCAACTTGAGATGGTGTGCCATGCTGGGATATCCAGTTTGTTATGCCCCTAACCAAAGTCCATGGGCAATGAGACTTGCAAGTTCCTACGATGGCTACAACAACCTCCTTAGATGAAATCCTCTGTTCTGTCAAGTTGAAATACCCCATCTTTTCACCATATTGGACAAATCATGTTTCTGTAAAAGATCATATTTCTTTTTAGATGTGGAGCAATTGATTCCAACGTGGAATAGGAACAGGAGATATTTAAATTGATGTAACTTTTAATGAGAGAAACTGTCAAGGCATGAGTAAAACAGTCAGCTATTTTTGTTTAGTTTGAGGGTG

mRNA sequence

TTTCCACCTTTCTTCACCCATTCGCATCTGAGCTCTCTCAGTCGCCGTCCGCCGCCGTCGCAGGTCTCAATCGCCCTTCGACGTTCGCCGTCGAAACTGGTTTTTATTGGATTTCAACTGGTCGTCCTCTTCTTTCTTTGAGTTTTGTGGTTACTTCTTCCTTTTGCGACTGTGGATTTTGGGTTTTTATTGGGTGATTGCACACCGTCCAGCTCCACCTTTATCTCTCTCTGTTCTGTCTCCTTAAGAATCAAGTCGTGTGATTGTTAGATTCCCAATTCCACTCCAACATCTATTCGCCATTTCAGGCCTCAATTTTTTCGGACCATTTAGACAAATAGAGAAATGGGGTTGGGTTAAAATGGGGATGCTAAGAGGAAATTAGGATGAACTTAGAGGAGGAAAACAGAATTCAGTGAAGACGATGAATGTGCAGCAACTTCCGAGAAGAGGAAAGAGGGAGGAAGCCTTTAGTTTATTCTAACAGAACAAATCCTATTTCTACACCAACTGTATTCGGCTGCAGAGCAAGAATATTGCACTTATGGCTTTGTTCGCACTGCCATTTCATTCGGAATCTTGTCTTTAATAAGCTTTTGTCGCCGTCTCTGCTGGGAAGACAACAATGCACAGGGCAAGCTTTCGTTTGGGATCAATAGCTGACTCGATATATAGATTCAAGCCGCACGAACATGTGCGAAAACAGGATGCAAGCAAATTGGTATTCCATCGGGCGCTTCTCATCTCCAGTGGTAGTGAAATTTGGGGAAATGGAGCAGAGTCAACTGCATTCATGCAGATGCAGATTGTCAATGCACTTCGTCTGGGTGATAGAAGTAGGGCATCCAACCTGCTTATGGTTCTTGGCCAGGAAAAGTTCTCTTTAACTGCAGATAATTTTGTTCGCATTTTGAGTTACTGTGCAAAATCCCCTGATCCGCTGTTTGTCATGGAGACTTGGAAAATAATGGAAGAAAGAGGAATTTTTCTGAATAACACATGCTCCTTACTTATGATAGAAGCACTCTGTAAAGGGGGTTACTTGGATGAGGCATTTGGTCTAATAAATTTCCTAGCAGAAAGTCATGTGATGTTCCCTGCTCTGCCTGCGTACAATTGTTTCTTGAGAGCCTGTGCCATAAGGCAAAGTATGGTTCATGCTAGTCAATGTTTGGATCTTATGGATCACAAAATGGTTGGGAAGAATGAAGCTACATATTCTGAGCTACTCAAGCTTGCAGTTTGTCAGAAAAACTTGTCTTCTGTGCATGAAATCTGGAGGGACTTTGTAAAAAATTATAGTCCAAGCGTTTCATCGCTGAGGAAGTTTATATGGTCCTACGCAAGGATGGGAGATGTGAAATCTGCATATACTGCACTGCAAAAGATGGTGACTTTGAATAATGGAGCCGCAGGAAGAAAGTTACAATCTTTGGACATTCCAATACCTTCAAGAACTGAACTTTATCGTTACAATTTTAATTTTGAGGAAAAAGAACCCTCTATTGATGAGTTTTTCTATAAGAAAATGGTCCCCTGGAATGGTGACGTAGGGGGGATTTCTGTTAGTGGTATAAAATGTGGAGAAGTTGAAACTGGTCCATTAACTGTGCCAAACAATCACAAAAGCAGTTTTGTAAGGAAGGTTTTGAGATGGTCTTCCAATGATGTGATGCGTGCATGCTCTCTTGCTGGGAACTGTGGTCTTGCAGAGCAGCTAATGCAACAGATGCATAAACTTGGATTGCAACCGTCATCCCACACATTTGATGGTTTTGTTAGATCAGTTGTCTCAGAGAGAGGTTTCAGTGCTGGCATGGAAATATTAAAAGTAATGCAACAGAGGGGATTGGAGCCATATGATTCAACTCTTGCTGCTGTTTCAGTAAGTTGTAGCAAGGCGCTAGAACTTGATTTGGCTGAAGCTCTACTTGAACGACTTTCAGCTTGTCCTTACCCATACCCCTTCAATGCATTTTTTTCTGCATGTGACATGATGGATCAGCCTGAACGTGCCATGCGTATGCTTGTTAAAATGAAACAAATGAAGGTGGCTCCAGATGTCAGGACCTATGAGCTTCTATATTCTTTATTTGGTAATGTGAATGCTCCATATGAGGAGGGGGACAATTTGTCACAGGTGGATGCTGCCAAAAGGGTACGCATGATAGAGATGGATATGGGAAAACATGGGATACAATATAGTCATTTCTCTATGATGAACTTGTTGAAAGCTCTAGGTACAGAGGGGATGAAGAAGGAGGTTCTTCAGTATTTAAATTTGGCAGAGAACCTCTTTTATTACAACAACACTAGTCTGGGGATGCCCGTTTATAACACAGTGTTGCATTTTTTGGTTGATTCCAAGGAAATGCTGCAACATTTGAGATGATGTTAGACTGTTGTAGTGTGATCGGATGCTTGAAATCAGCTTTTGCTCTTCTTTCCTTGATGATTCGCTCAGGGTTTTGTCCACAGATATTAACTTATACGAGCCTAGTAAAGATTGTGTTGGGATTTGAGAGATTTGATGATGCCTTGAACCTTTTGGATCAAGCCAGTTCAGAAGGGATTGAACTTGATGTCATTATAATGAATACAATCATGCGGAAAGCTTGTGAAAAGGCAAGGATTGATGTTATTGAGTTTCTCGTTGAGAAGATGAACCGTGAAAAGATCCCACCCGACCCTTCAACTTGTCAAAATGTCTTCTCTACATATGTGAACCTCGGTTATCACAGCACTGCCATGGAAGCACTGCAAGTACTGAGCATGCGCATGTTATTATGCGAAGAAGATGATGCCTCCGTGACAGAATATATGGAAAACTTTGTGCTTGCAGAAGACACCGGAGCCGATTCACGTATTGCGGAGTTCTTCAAATGCTCTAGAGAGTACCTGAGTTTTGCTCTCTTCAACTTGAGATGGTGTGCCATGCTGGGATATCCAGTTTGTTATGCCCCTAACCAAAGTCCATGGGCAATGAGACTTGCAAGTTCCTACGATGGCTACAACAACCTCCTTAGATGAAATCCTCTGTTCTGTCAAGTTGAAATACCCCATCTTTTCACCATATTGGACAAATCATGTTTCTGTAAAAGATCATATTTCTTTTTAGATGTGGAGCAATTGATTCCAACGTGGAATAGGAACAGGAGATATTTAAATTGATGTAACTTTTAATGAGAGAAACTGTCAAGGCATGAGTAAAACAGTCAGCTATTTTTGTTTAGTTTGAGGGTG

Coding sequence (CDS)

ATGCACAGGGCAAGCTTTCGTTTGGGATCAATAGCTGACTCGATATATAGATTCAAGCCGCACGAACATGTGCGAAAACAGGATGCAAGCAAATTGGTATTCCATCGGGCGCTTCTCATCTCCAGTGGTAGTGAAATTTGGGGAAATGGAGCAGAGTCAACTGCATTCATGCAGATGCAGATTGTCAATGCACTTCGTCTGGGTGATAGAAGTAGGGCATCCAACCTGCTTATGGTTCTTGGCCAGGAAAAGTTCTCTTTAACTGCAGATAATTTTGTTCGCATTTTGAGTTACTGTGCAAAATCCCCTGATCCGCTGTTTGTCATGGAGACTTGGAAAATAATGGAAGAAAGAGGAATTTTTCTGAATAACACATGCTCCTTACTTATGATAGAAGCACTCTGTAAAGGGGGTTACTTGGATGAGGCATTTGGTCTAATAAATTTCCTAGCAGAAAGTCATGTGATGTTCCCTGCTCTGCCTGCGTACAATTGTTTCTTGAGAGCCTGTGCCATAAGGCAAAGTATGGTTCATGCTAGTCAATGTTTGGATCTTATGGATCACAAAATGGTTGGGAAGAATGAAGCTACATATTCTGAGCTACTCAAGCTTGCAGTTTGTCAGAAAAACTTGTCTTCTGTGCATGAAATCTGGAGGGACTTTGTAAAAAATTATAGTCCAAGCGTTTCATCGCTGAGGAAGTTTATATGGTCCTACGCAAGGATGGGAGATGTGAAATCTGCATATACTGCACTGCAAAAGATGGTGACTTTGAATAATGGAGCCGCAGGAAGAAAGTTACAATCTTTGGACATTCCAATACCTTCAAGAACTGAACTTTATCGTTACAATTTTAATTTTGAGGAAAAAGAACCCTCTATTGATGAGTTTTTCTATAAGAAAATGGTCCCCTGGAATGGTGACGTAGGGGGGATTTCTGTTAGTGGTATAAAATGTGGAGAAGTTGAAACTGGTCCATTAACTGTGCCAAACAATCACAAAAGCAGTTTTGTAAGGAAGGTTTTGAGATGGTCTTCCAATGATGTGATGCGTGCATGCTCTCTTGCTGGGAACTGTGGTCTTGCAGAGCAGCTAATGCAACAGATGCATAAACTTGGATTGCAACCGTCATCCCACACATTTGATGGTTTTGTTAGATCAGTTGTCTCAGAGAGAGGTTTCAGTGCTGGCATGGAAATATTAAAAGTAATGCAACAGAGGGGATTGGAGCCATATGATTCAACTCTTGCTGCTGTTTCAGTAAGTTGTAGCAAGGCGCTAGAACTTGATTTGGCTGAAGCTCTACTTGAACGACTTTCAGCTTGTCCTTACCCATACCCCTTCAATGCATTTTTTTCTGCATGTGACATGATGGATCAGCCTGAACGTGCCATGCGTATGCTTGTTAAAATGAAACAAATGAAGGTGGCTCCAGATGTCAGGACCTATGAGCTTCTATATTCTTTATTTGGTAATGTGAATGCTCCATATGAGGAGGGGGACAATTTGTCACAGGTGGATGCTGCCAAAAGGGTACGCATGATAGAGATGGATATGGGAAAACATGGGATACAATATAGTCATTTCTCTATGATGAACTTGTTGAAAGCTCTAGGTACAGAGGGGATGAAGAAGGAGGTTCTTCAGTATTTAAATTTGGCAGAGAACCTCTTTTATTACAACAACACTAGTCTGGGGATGCCCGTTTATAACACAGTGTTGCATTTTTTGGTTGATTCCAAGGAAATGCTGCAACATTTGAGATGA

Protein sequence

MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYARMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKEMLQHLR*

Homology

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BLAST of Cucsa.079810.2 vs. Swiss-Prot
Match: PP126_ARATH (Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2)

HSP 1 Score: 424.9 bits (1091), Expect = 1.5e-117
Identity = 245/546 (44.87%), Postives = 336/546 (61.54%), Query Frame = 1


Query: 52  ESTAFMQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMET 111
           + +  +Q+QIV+ALR G+R  AS LL  L Q  +SL+AD+F  IL YCA+SPDP+FVMET
Sbjct: 59  DESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARSPDPVFVMET 118

Query: 112 WKIMEERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACA 171
           + +M ++ I L++   L ++++LC GG+LD+A   I+ + E   + P LP YN FL ACA
Sbjct: 119 YSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACA 178

Query: 172 IRQSMVHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSS 231
             +S+ HAS+CL+LMD + VGKN  TY  LLKLAV Q+NLS+V++IW+ +V +Y+  + S
Sbjct: 179 RTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILS 238

Query: 232 LRKFIWSYARMGDVKSAYTALQKMVTL----------NNGAAGRKLQS--LDIPIPSRTE 291
           LR+FIWS+ R+GD+KSAY  LQ MV L          N G    KL S  L IP+PS+ E
Sbjct: 239 LRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFVKSNRG----KLHSTRLYIPVPSKDE 298

Query: 292 LYRYNFNFEEKEPSIDEFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVR 351
                F F                       G++   + C    +  + +P  H      
Sbjct: 299 TGSEKFAF-----------------------GVTDRIVDCN--SSSKVALPKGHNKILAI 358

Query: 352 KVLRWSSNDVMRACSLAGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGME 411
           +VLRWS NDV+ AC  + N  LAEQLM Q                               
Sbjct: 359 RVLRWSFNDVIHACGQSKNSELAEQLMLQ------------------------------- 418

Query: 412 ILKVMQQRGLEP---YDSTLAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACD 471
            LKVMQQ+ L+P     +T+AA    CSKAL++DLAE LL+++S C Y YPFN   +A D
Sbjct: 419 -LKVMQQQNLKPYDSTLATVAAY---CSKALQVDLAEHLLDQISECSYSYPFNNLLAAYD 478

Query: 472 MMDQPERAMRMLVKMKQMKVAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIE 531
            +DQPERA+R+L +MK++K+ PD+RTYELL+SLFGNVNAPYEEG+ LSQVD  KR+  IE
Sbjct: 479 SLDQPERAVRVLARMKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIE 538

Query: 532 MDMGKHGIQYSHFSMMNLLKALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHF 583
           MDM ++G Q+S  S +N+L+ALG EGM  E++++L  AENL  ++N  LG P YN VLH 
Sbjct: 539 MDMMRNGFQHSPISRLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHS 540

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BLAST of Cucsa.079810.2 vs. TrEMBL
Match: M5X5C4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022231mg PE=4 SV=1)

HSP 1 Score: 644.0 bits (1660), Expect = 1.7e-181
Identity = 329/535 (61.50%), Postives = 409/535 (76.45%), Query Frame = 1


Query: 57  MQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIME 116
           MQMQIV+ALRLG+R +ASNLL+ LG    SL AD+F+ IL+YCAKSPDPLFVMETW+IM+
Sbjct: 1   MQMQIVDALRLGERGQASNLLLNLGHGNDSLRADDFIYILNYCAKSPDPLFVMETWRIMD 60

Query: 117 ERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSM 176
           E+ I LNN CSLLM+++LCKGGYL+EAF LINFL E   + P LP YN FLRACA  QS+
Sbjct: 61  EKEIGLNNICSLLMVQSLCKGGYLEEAFKLINFLGEIPGIHPVLPIYNSFLRACAKMQSI 120

Query: 177 VHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFI 236
            +A+QCLDLM+ +MVGKNE TYSELLKLAV Q+NL + HEIW+D++K YS S+  LRKFI
Sbjct: 121 KNANQCLDLMERQMVGKNEVTYSELLKLAVWQQNLPAAHEIWKDYIKCYSLSIIPLRKFI 180

Query: 237 WSYARMGDVKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRYNFNF 296
           WS+ R+GD+KSAY  LQ MV L        N  + G+   S LDIPIPS  EL     + 
Sbjct: 181 WSFTRLGDLKSAYEKLQYMVALAIRGNTYVNRTSEGKLYSSRLDIPIPSICELDLKKLDL 240

Query: 297 EEKEPSIDEFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSN 356
           EE + SI   + + +     +    +  G+  GEVE   + + + H S  V K+LRWS +
Sbjct: 241 EENKHSIPSIYCENLDDHAVNADQCTTFGLGVGEVENVGMDMLDIHISQPVMKILRWSFS 300

Query: 357 DVMRACSLAGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQR 416
           DV+ AC+   N GLAEQL+ QM K GLQPSSHT+DGFVR+V SERGFS+GMEIL++MQQR
Sbjct: 301 DVIHACARLRNGGLAEQLILQMQKFGLQPSSHTYDGFVRAVTSERGFSSGMEILRIMQQR 360

Query: 417 GLEPYDSTLAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRM 476
            L+PYDSTLA +S+ CSK LELD AEALL ++S C YP+PFNAF +ACD +DQPERA++M
Sbjct: 361 NLKPYDSTLANLSIGCSKVLELDFAEALLVQISECSYPHPFNAFLAACDTVDQPERAVQM 420

Query: 477 LVKMKQMKVAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYS 536
           L KMKQ+KV PD+RTYELL+SLFGNVNAPYEEG+ LSQVDAAKR+  IEMDM ++GIQ+S
Sbjct: 421 LAKMKQLKVVPDIRTYELLFSLFGNVNAPYEEGNMLSQVDAAKRINAIEMDMARYGIQHS 480

Query: 537 HFSMMNLLKALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 583
           + SM NLLKALG EGM +E++QYL++AEN+F  NN  LG P+YNTVLH LV++KE
Sbjct: 481 YLSMKNLLKALGAEGMIRELIQYLDVAENIFCRNNIYLGTPIYNTVLHSLVEAKE 535

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BLAST of Cucsa.079810.2 vs. TrEMBL
Match: A0A061FEB6_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_034369 PE=4 SV=1)

HSP 1 Score: 629.4 bits (1622), Expect = 4.4e-177
Identity = 332/592 (56.08%), Postives = 419/592 (70.78%), Query Frame = 1


Query: 1   MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAES-TAFMQM 60
           M R    L S+AD++ + K  EH R+    +L   R +   +G    G G ES T  +Q+
Sbjct: 1   MRRVRIPLRSVADTLCKSKSREHGRRNVNGRLELCRTVATINGHVFLGYGEESRTKTLQL 60

Query: 61  QIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERG 120
           QIV+ALRLG+RSRAS LL  LG     L AD+ V IL+YCAKSPDPLF METW+++EE+ 
Sbjct: 61  QIVDALRLGERSRASRLLSDLGDGNQPLKADDIVYILNYCAKSPDPLFFMETWRLIEEKE 120

Query: 121 IFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHA 180
           I LNN C LLM++ALC+GGYL+EA  LI FL E+  ++P L  YN FL ACA  Q+ VHA
Sbjct: 121 IGLNNKCYLLMVQALCRGGYLEEACNLIKFLGENRGIYPFLSIYNSFLGACAKMQTAVHA 180

Query: 181 SQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSY 240
           +QCLDLM+ + VGKNE TYSELLKLAV Q+NLS+VHEIW+D++K+YS ++ SLRKFIWS+
Sbjct: 181 NQCLDLMERQRVGKNEITYSELLKLAVWQQNLSAVHEIWKDYIKHYSLNIISLRKFIWSF 240

Query: 241 ARMGDVKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRYNFNFEEK 300
            R+ D+KSAY  LQ MV L        +    GR   S LDIPIPS+ EL        E 
Sbjct: 241 TRLKDLKSAYETLQHMVALAISGKIFVSRTGEGRLYSSRLDIPIPSKGELGSQKVELGEN 300

Query: 301 EPSIDEFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVM 360
           E      F         D    +V   K      G L   NN+K   V KVLRWS +DV+
Sbjct: 301 EQDFALKF---------DTDASNVEICKSVSATVGML---NNYKRMPVMKVLRWSFSDVI 360

Query: 361 RACSLAGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLE 420
            AC+ A +  LAE LM QM  LGLQPSSHT+DGF+R+V+  RGFSAGME+LKVM++R ++
Sbjct: 361 HACAQARDYKLAEHLMVQMQNLGLQPSSHTYDGFMRAVIPTRGFSAGMEMLKVMEERNMK 420

Query: 421 PYDSTLAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVK 480
           PY ST AA+SV CSKALELDLAEALL+++  CP+PYP+NAF  ACD MDQPERA+R+L K
Sbjct: 421 PYASTFAALSVQCSKALELDLAEALLDQVCECPHPYPYNAFLGACDTMDQPERAIRLLAK 480

Query: 481 MKQMKVAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFS 540
           M+Q K+ PD+RTYELL+SLFGNVNAPYEEGD LSQVD++KR++ IEMDM K+G+Q+SH S
Sbjct: 481 MRQRKLQPDIRTYELLFSLFGNVNAPYEEGDMLSQVDSSKRIKAIEMDMAKNGVQHSHLS 540

Query: 541 MMNLLKALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 583
           M NLLKALG EGM +E+L YL++AE LF + NT +G P+YNTVLH L++++E
Sbjct: 541 MKNLLKALGAEGMTRELLHYLHIAEKLFCHTNTYMGAPIYNTVLHSLIEAEE 580

[Close]

BLAST of Cucsa.079810.2 vs. TrEMBL
Match: A0A061FEW4_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_034369 PE=4 SV=1)

HSP 1 Score: 629.4 bits (1622), Expect = 4.4e-177
Identity = 332/592 (56.08%), Postives = 419/592 (70.78%), Query Frame = 1


Query: 1   MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAES-TAFMQM 60
           M R    L S+AD++ + K  EH R+    +L   R +   +G    G G ES T  +Q+
Sbjct: 1   MRRVRIPLRSVADTLCKSKSREHGRRNVNGRLELCRTVATINGHVFLGYGEESRTKTLQL 60

Query: 61  QIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERG 120
           QIV+ALRLG+RSRAS LL  LG     L AD+ V IL+YCAKSPDPLF METW+++EE+ 
Sbjct: 61  QIVDALRLGERSRASRLLSDLGDGNQPLKADDIVYILNYCAKSPDPLFFMETWRLIEEKE 120

Query: 121 IFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHA 180
           I LNN C LLM++ALC+GGYL+EA  LI FL E+  ++P L  YN FL ACA  Q+ VHA
Sbjct: 121 IGLNNKCYLLMVQALCRGGYLEEACNLIKFLGENRGIYPFLSIYNSFLGACAKMQTAVHA 180

Query: 181 SQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSY 240
           +QCLDLM+ + VGKNE TYSELLKLAV Q+NLS+VHEIW+D++K+YS ++ SLRKFIWS+
Sbjct: 181 NQCLDLMERQRVGKNEITYSELLKLAVWQQNLSAVHEIWKDYIKHYSLNIISLRKFIWSF 240

Query: 241 ARMGDVKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRYNFNFEEK 300
            R+ D+KSAY  LQ MV L        +    GR   S LDIPIPS+ EL        E 
Sbjct: 241 TRLKDLKSAYETLQHMVALAISGKIFVSRTGEGRLYSSRLDIPIPSKGELGSQKVELGEN 300

Query: 301 EPSIDEFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVM 360
           E      F         D    +V   K      G L   NN+K   V KVLRWS +DV+
Sbjct: 301 EQDFALKF---------DTDASNVEICKSVSATVGML---NNYKRMPVMKVLRWSFSDVI 360

Query: 361 RACSLAGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLE 420
            AC+ A +  LAE LM QM  LGLQPSSHT+DGF+R+V+  RGFSAGME+LKVM++R ++
Sbjct: 361 HACAQARDYKLAEHLMVQMQNLGLQPSSHTYDGFMRAVIPTRGFSAGMEMLKVMEERNMK 420

Query: 421 PYDSTLAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVK 480
           PY ST AA+SV CSKALELDLAEALL+++  CP+PYP+NAF  ACD MDQPERA+R+L K
Sbjct: 421 PYASTFAALSVQCSKALELDLAEALLDQVCECPHPYPYNAFLGACDTMDQPERAIRLLAK 480

Query: 481 MKQMKVAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFS 540
           M+Q K+ PD+RTYELL+SLFGNVNAPYEEGD LSQVD++KR++ IEMDM K+G+Q+SH S
Sbjct: 481 MRQRKLQPDIRTYELLFSLFGNVNAPYEEGDMLSQVDSSKRIKAIEMDMAKNGVQHSHLS 540

Query: 541 MMNLLKALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 583
           M NLLKALG EGM +E+L YL++AE LF + NT +G P+YNTVLH L++++E
Sbjct: 541 MKNLLKALGAEGMTRELLHYLHIAEKLFCHTNTYMGAPIYNTVLHSLIEAEE 580

[Close]

BLAST of Cucsa.079810.2 vs. TrEMBL
Match: A0A0D2R4H9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118000 PE=4 SV=1)

HSP 1 Score: 627.5 bits (1617), Expect = 1.7e-176
Identity = 333/588 (56.63%), Postives = 425/588 (72.28%), Query Frame = 1


Query: 8   LGSIADSIYRFKPHEHVRKQD--ASKLVFHRALLISSGSEIWGNGAES-TAFMQMQIVNA 67
           L SIAD++ RFK  E  R +     +L   R++   +G+   G G E  T  +Q+QIV+A
Sbjct: 5   LRSIADTLCRFKSGELERGRGNFIRRLELCRSVATINGNVFLGYGGEPLTKSIQVQIVDA 64

Query: 68  LRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGIFLNN 127
           LRLG+RSRAS+LL+  G    SL A++FV IL+YCA+SPDPLFVMETW++MEE+ I LNN
Sbjct: 65  LRLGERSRASSLLLDFGNGNQSLKANDFVYILNYCARSPDPLFVMETWRLMEEKEIDLNN 124

Query: 128 TCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHASQCLD 187
           TC LLM+ ALC+GGYL+EA   + FL E+H  +P LP YNCFL ACA  +S++HA+QCLD
Sbjct: 125 TCYLLMVRALCRGGYLEEACKFMKFLRENHGTYPLLPVYNCFLGACAKMKSIIHANQCLD 184

Query: 188 LMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYARMGD 247
           LM+ + VGKNE TYS LLKLAV Q++LS+V EIW D++K+YS ++ SLR+FIWS+ R+ D
Sbjct: 185 LMELQRVGKNEITYSVLLKLAVWQQDLSAVREIWEDYIKHYSLNIISLRRFIWSFTRLKD 244

Query: 248 VKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRYNFNFEEKEPSID 307
           +KSAY  LQ MV L        +    GR   S LDIPIPS++EL   N    E E S+ 
Sbjct: 245 LKSAYETLQHMVALAISGKHFVSRTDEGRLYSSRLDIPIPSKSELGSQNVQSGENEQSLA 304

Query: 308 EFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSL 367
             F         D+   ++   K      G L   NN+K+  V +VLR S NDV+ AC+ 
Sbjct: 305 FKF---------DIDSSNIERSKSISATVGML---NNYKNLPVMEVLRLSINDVLHACAQ 364

Query: 368 AGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDST 427
           A   GLAEQLM  M  LGLQPSSHT+DGFVR+++  RGF AGME+LKVM++R L+P+DST
Sbjct: 365 ARAYGLAEQLMMLMQNLGLQPSSHTYDGFVRAIIQRRGFGAGMEMLKVMEERNLKPHDST 424

Query: 428 LAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMK 487
           LAA+SV CSKALELDLAEALLE++  CPYPYPFNAF  ACD MDQP+RA+R+L KM+Q+K
Sbjct: 425 LAALSVQCSKALELDLAEALLEQVCECPYPYPFNAFLEACDNMDQPKRALRILAKMRQLK 484

Query: 488 VAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLL 547
           + PD+RTYELL+S+FGNVNAPYEEG+ LS VD+ KR+  IEMDM K+G+Q+SH SM NLL
Sbjct: 485 LQPDIRTYELLFSMFGNVNAPYEEGNRLSHVDSRKRINAIEMDMAKNGVQHSHLSMKNLL 544

Query: 548 KALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKEM 584
           KALG EGM  E+LQYL++AENLF + NT LG P+YN VLH LV++ E+
Sbjct: 545 KALGAEGMTIELLQYLHVAENLFCHTNTKLGAPMYNVVLHSLVEANEV 580

[Close]

BLAST of Cucsa.079810.2 vs. TrEMBL
Match: A0A0D2QBL1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118000 PE=4 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 2.2e-176
Identity = 333/587 (56.73%), Postives = 424/587 (72.23%), Query Frame = 1


Query: 8   LGSIADSIYRFKPHEHVRKQD--ASKLVFHRALLISSGSEIWGNGAES-TAFMQMQIVNA 67
           L SIAD++ RFK  E  R +     +L   R++   +G+   G G E  T  +Q+QIV+A
Sbjct: 5   LRSIADTLCRFKSGELERGRGNFIRRLELCRSVATINGNVFLGYGGEPLTKSIQVQIVDA 64

Query: 68  LRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGIFLNN 127
           LRLG+RSRAS+LL+  G    SL A++FV IL+YCA+SPDPLFVMETW++MEE+ I LNN
Sbjct: 65  LRLGERSRASSLLLDFGNGNQSLKANDFVYILNYCARSPDPLFVMETWRLMEEKEIDLNN 124

Query: 128 TCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHASQCLD 187
           TC LLM+ ALC+GGYL+EA   + FL E+H  +P LP YNCFL ACA  +S++HA+QCLD
Sbjct: 125 TCYLLMVRALCRGGYLEEACKFMKFLRENHGTYPLLPVYNCFLGACAKMKSIIHANQCLD 184

Query: 188 LMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYARMGD 247
           LM+ + VGKNE TYS LLKLAV Q++LS+V EIW D++K+YS ++ SLR+FIWS+ R+ D
Sbjct: 185 LMELQRVGKNEITYSVLLKLAVWQQDLSAVREIWEDYIKHYSLNIISLRRFIWSFTRLKD 244

Query: 248 VKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRYNFNFEEKEPSID 307
           +KSAY  LQ MV L        +    GR   S LDIPIPS++EL   N    E E S+ 
Sbjct: 245 LKSAYETLQHMVALAISGKHFVSRTDEGRLYSSRLDIPIPSKSELGSQNVQSGENEQSLA 304

Query: 308 EFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSL 367
             F         D+   ++   K      G L   NN+K+  V +VLR S NDV+ AC+ 
Sbjct: 305 FKF---------DIDSSNIERSKSISATVGML---NNYKNLPVMEVLRLSINDVLHACAQ 364

Query: 368 AGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDST 427
           A   GLAEQLM  M  LGLQPSSHT+DGFVR+++  RGF AGME+LKVM++R L+P+DST
Sbjct: 365 ARAYGLAEQLMMLMQNLGLQPSSHTYDGFVRAIIQRRGFGAGMEMLKVMEERNLKPHDST 424

Query: 428 LAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMK 487
           LAA+SV CSKALELDLAEALLE++  CPYPYPFNAF  ACD MDQP+RA+R+L KM+Q+K
Sbjct: 425 LAALSVQCSKALELDLAEALLEQVCECPYPYPFNAFLEACDNMDQPKRALRILAKMRQLK 484

Query: 488 VAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLL 547
           + PD+RTYELL+S+FGNVNAPYEEG+ LS VD+ KR+  IEMDM K+G+Q+SH SM NLL
Sbjct: 485 LQPDIRTYELLFSMFGNVNAPYEEGNRLSHVDSRKRINAIEMDMAKNGVQHSHLSMKNLL 544

Query: 548 KALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 583
           KALG EGM  E+LQYL++AENLF + NT LG P+YN VLH LV++ E
Sbjct: 545 KALGAEGMTIELLQYLHVAENLFCHTNTKLGAPMYNVVLHSLVEANE 579

[Close]

BLAST of Cucsa.079810.2 vs. TAIR10
Match: AT1G76280.3 (AT1G76280.3 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 485.0 bits (1247), Expect = 6.8e-137
Identity = 262/543 (48.25%), Postives = 357/543 (65.75%), Query Frame = 1


Query: 52  ESTAFMQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMET 111
           + +  +Q+QIV+ALR G+R  AS LL  L Q  +SL+AD+F  IL YCA+SPDP+    T
Sbjct: 59  DESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARSPDPV----T 118

Query: 112 WKIMEERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACA 171
           + +M ++ I L++   L ++++LC GG+LD+A   I+ + E   + P LP YN FL ACA
Sbjct: 119 YSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACA 178

Query: 172 IRQSMVHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSS 231
             +S+ HAS+CL+LMD + VGKN  TY  LLKLAV Q+NLS+V++IW+ +V +Y+  + S
Sbjct: 179 RTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILS 238

Query: 232 LRKFIWSYARMGDVKSAYTALQKMVTL----------NNGAAGRKLQS--LDIPIPSRTE 291
           LR+FIWS+ R+GD+KSAY  LQ MV L          N G    KL S  L IP+PS+ E
Sbjct: 239 LRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFVKSNRG----KLHSTRLYIPVPSKDE 298

Query: 292 LYRYNFNFEEKEPSIDEFFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVR 351
                F F                       G++   + C    +  + +P  H      
Sbjct: 299 TGSEKFAF-----------------------GVTDRIVDCNS--SSKVALPKGHNKILAI 358

Query: 352 KVLRWSSNDVMRACSLAGNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGME 411
           +VLRWS NDV+ AC  + N  LAEQLM QM  LGL PSSHT+DGF+R+V    G+  GM 
Sbjct: 359 RVLRWSFNDVIHACGQSKNSELAEQLMLQMQNLGLLPSSHTYDGFIRAVAFPEGYEYGMT 418

Query: 412 ILKVMQQRGLEPYDSTLAAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMD 471
           +LKVMQQ+ L+PYDSTLA V+  CSKAL++DLAE LL+++S C Y YPFN   +A D +D
Sbjct: 419 LLKVMQQQNLKPYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLD 478

Query: 472 QPERAMRMLVKMKQMKVAPDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDM 531
           QPERA+R+L +MK++K+ PD+RTYELL+SLFGNVNAPYEEG+ LSQVD  KR+  IEMDM
Sbjct: 479 QPERAVRVLARMKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDM 538

Query: 532 GKHGIQYSHFSMMNLLKALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVD 583
            ++G Q+S  S +N+L+ALG EGM  E++++L  AENL  ++N  LG P YN VLH L++
Sbjct: 539 MRNGFQHSPISRLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLE 568

[Close]

BLAST of Cucsa.079810.2 vs. NCBI nr
Match: gi|778726439|ref|XP_004139754.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cucumis sativus])

HSP 1 Score: 1168.7 bits (3022), Expect = 0.0e+00
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 1


Query: 1   MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 60
           MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ
Sbjct: 1   MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 60

Query: 61  IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 120
           IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI
Sbjct: 61  IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 120

Query: 121 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 180
           FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS
Sbjct: 121 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 180

Query: 181 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 240
           QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA
Sbjct: 181 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 240

Query: 241 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 300
           RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK
Sbjct: 241 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 300

Query: 301 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 360
           KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG
Sbjct: 301 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 360

Query: 361 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS 420
           LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS
Sbjct: 361 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS 420

Query: 421 VSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDV 480
           VSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDV
Sbjct: 421 VSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDV 480

Query: 481 RTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGT 540
           RTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGT
Sbjct: 481 RTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGT 540

Query: 541 EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 583
           EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE
Sbjct: 541 EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 582

[Close]

BLAST of Cucsa.079810.2 vs. NCBI nr
Match: gi|659123018|ref|XP_008461447.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cucumis melo])

HSP 1 Score: 1086.6 bits (2809), Expect = 0.0e+00
Identity = 542/583 (92.97%), Postives = 557/583 (95.54%), Query Frame = 1


Query: 1   MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 60
           MHRASFRLGSIADSIYRFKPHE VRKQDASKLVFHRALLIS GSEIWGNGAESTAFMQ+Q
Sbjct: 1   MHRASFRLGSIADSIYRFKPHELVRKQDASKLVFHRALLISKGSEIWGNGAESTAFMQIQ 60

Query: 61  IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 120
           IV+ALRLGDRS+ASNLLMVLGQEK SLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI
Sbjct: 61  IVDALRLGDRSKASNLLMVLGQEKCSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 120

Query: 121 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 180
           FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFP LP YNCFLRACAIRQS VHAS
Sbjct: 121 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPVLPVYNCFLRACAIRQSTVHAS 180

Query: 181 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 240
           QCLDLMDH+MVGKNEATYSELLKLAVCQ+N SSVHEIW DFVKNYSPSVSSLRKFIWS+A
Sbjct: 181 QCLDLMDHRMVGKNEATYSELLKLAVCQENSSSVHEIWTDFVKNYSPSVSSLRKFIWSFA 240

Query: 241 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 300
           R+GD+ SAYTALQKMV L  GA GRKLQSLDIPIP RTE Y  NFNFEEKEPSIDEFF K
Sbjct: 241 RLGDLTSAYTALQKMVALATGATGRKLQSLDIPIPLRTEFYHNNFNFEEKEPSIDEFFCK 300

Query: 301 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 360
           KMVPWNGDVGGISV+ +KCG  ETGPLTVPNNH+SSFVRKVLRWSSNDVMR+CSLAGNCG
Sbjct: 301 KMVPWNGDVGGISVNDMKCG--ETGPLTVPNNHRSSFVRKVLRWSSNDVMRSCSLAGNCG 360

Query: 361 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS 420
           LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS
Sbjct: 361 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS 420

Query: 421 VSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDV 480
           VSCSKALELDLAEALLERLSACPYPYPFNAF SAC +MDQPERAMRMLVKMKQMKV PDV
Sbjct: 421 VSCSKALELDLAEALLERLSACPYPYPFNAFLSACGVMDQPERAMRMLVKMKQMKVVPDV 480

Query: 481 RTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGT 540
           RTYELLYSLFGNVNAPYEEGD LSQVDAAKR+RMIEMDMGKHGIQYSHFSMMNLLKALG 
Sbjct: 481 RTYELLYSLFGNVNAPYEEGDKLSQVDAAKRIRMIEMDMGKHGIQYSHFSMMNLLKALGA 540

Query: 541 EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKEM 584
           EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE+
Sbjct: 541 EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKEI 581

[Close]

BLAST of Cucsa.079810.2 vs. NCBI nr
Match: gi|778726443|ref|XP_011659099.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cucumis sativus])

HSP 1 Score: 1057.4 bits (2733), Expect = 9.4e-306
Identity = 526/526 (100.00%), Postives = 526/526 (100.00%), Query Frame = 1


Query: 57  MQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIME 116
           MQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIME
Sbjct: 1   MQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIME 60

Query: 117 ERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSM 176
           ERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSM
Sbjct: 61  ERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSM 120

Query: 177 VHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFI 236
           VHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFI
Sbjct: 121 VHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFI 180

Query: 237 WSYARMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDE 296
           WSYARMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDE
Sbjct: 181 WSYARMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDE 240

Query: 297 FFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLA 356
           FFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLA
Sbjct: 241 FFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLA 300

Query: 357 GNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTL 416
           GNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTL
Sbjct: 301 GNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTL 360

Query: 417 AAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKV 476
           AAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKV
Sbjct: 361 AAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKV 420

Query: 477 APDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLK 536
           APDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLK
Sbjct: 421 APDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLK 480

Query: 537 ALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 583
           ALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE
Sbjct: 481 ALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE 526

[Close]

BLAST of Cucsa.079810.2 vs. NCBI nr
Match: gi|659123020|ref|XP_008461448.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cucumis melo])

HSP 1 Score: 981.1 bits (2535), Expect = 8.5e-283
Identity = 488/527 (92.60%), Postives = 503/527 (95.45%), Query Frame = 1


Query: 57  MQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIME 116
           MQ+QIV+ALRLGDRS+ASNLLMVLGQEK SLTADNFVRILSYCAKSPDPLFVMETWKIME
Sbjct: 1   MQIQIVDALRLGDRSKASNLLMVLGQEKCSLTADNFVRILSYCAKSPDPLFVMETWKIME 60

Query: 117 ERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSM 176
           ERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFP LP YNCFLRACAIRQS 
Sbjct: 61  ERGIFLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPVLPVYNCFLRACAIRQST 120

Query: 177 VHASQCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFI 236
           VHASQCLDLMDH+MVGKNEATYSELLKLAVCQ+N SSVHEIW DFVKNYSPSVSSLRKFI
Sbjct: 121 VHASQCLDLMDHRMVGKNEATYSELLKLAVCQENSSSVHEIWTDFVKNYSPSVSSLRKFI 180

Query: 237 WSYARMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDE 296
           WS+AR+GD+ SAYTALQKMV L  GA GRKLQSLDIPIP RTE Y  NFNFEEKEPSIDE
Sbjct: 181 WSFARLGDLTSAYTALQKMVALATGATGRKLQSLDIPIPLRTEFYHNNFNFEEKEPSIDE 240

Query: 297 FFYKKMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLA 356
           FF KKMVPWNGDVGGISV+ +KCG  ETGPLTVPNNH+SSFVRKVLRWSSNDVMR+CSLA
Sbjct: 241 FFCKKMVPWNGDVGGISVNDMKCG--ETGPLTVPNNHRSSFVRKVLRWSSNDVMRSCSLA 300

Query: 357 GNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTL 416
           GNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTL
Sbjct: 301 GNCGLAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTL 360

Query: 417 AAVSVSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKV 476
           AAVSVSCSKALELDLAEALLERLSACPYPYPFNAF SAC +MDQPERAMRMLVKMKQMKV
Sbjct: 361 AAVSVSCSKALELDLAEALLERLSACPYPYPFNAFLSACGVMDQPERAMRMLVKMKQMKV 420

Query: 477 APDVRTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLK 536
            PDVRTYELLYSLFGNVNAPYEEGD LSQVDAAKR+RMIEMDMGKHGIQYSHFSMMNLLK
Sbjct: 421 VPDVRTYELLYSLFGNVNAPYEEGDKLSQVDAAKRIRMIEMDMGKHGIQYSHFSMMNLLK 480

Query: 537 ALGTEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKEM 584
           ALG EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKE+
Sbjct: 481 ALGAEGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKEI 525

[Close]

BLAST of Cucsa.079810.2 vs. NCBI nr
Match: gi|778726446|ref|XP_011659100.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X3 [Cucumis sativus])

HSP 1 Score: 807.7 bits (2085), Expect = 1.3e-230
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 1


Query: 1   MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 60
           MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ
Sbjct: 1   MHRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 60

Query: 61  IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 120
           IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI
Sbjct: 61  IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 120

Query: 121 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 180
           FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS
Sbjct: 121 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 180

Query: 181 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 240
           QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA
Sbjct: 181 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 240

Query: 241 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 300
           RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK
Sbjct: 241 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 300

Query: 301 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 360
           KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG
Sbjct: 301 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 360

Query: 361 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEI 401
           LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEI
Sbjct: 361 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEI 400

The following BLAST results are available for this feature:

BLAST of Cucsa.079810.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP126_ARATH	1.5e-117	44.87	Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cucsa.079810.2 vs. TrEMBL


Match Name	E-value	Identity	Description
M5X5C4_PRUPE	1.7e-181	61.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022231mg PE=4 SV=1	[more]
A0A061FEB6_THECC	4.4e-177	56.08	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2 (Fra...	[more]
A0A061FEW4_THECC	4.4e-177	56.08	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1 OS=T...	[more]
A0A0D2R4H9_GOSRA	1.7e-176	56.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118000 PE=4 SV=1	[more]
A0A0D2QBL1_GOSRA	2.2e-176	56.73	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118000 PE=4 SV=1	[more]

BLAST of Cucsa.079810.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76280.3	6.8e-137	48.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cucsa.079810.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726439\|ref\|XP_004139754.2\|	0.0e+00	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cuc...	[more]
gi\|659123018\|ref\|XP_008461447.1\|	0.0e+00	92.97	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cuc...	[more]
gi\|778726443\|ref\|XP_011659099.1\|	9.4e-306	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cuc...	[more]
gi\|659123020\|ref\|XP_008461448.1\|	8.5e-283	92.60	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cuc...	[more]
gi\|778726446\|ref\|XP_011659100.1\|	1.3e-230	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X3 [Cuc...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.079810	Cucsa.079810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.079810.2	Cucsa.079810.2-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.079810.2.three_prime_UTR.3	Cucsa.079810.2.three_prime_UTR.3	three_prime_UTR
Cucsa.079810.2.three_prime_UTR.2	Cucsa.079810.2.three_prime_UTR.2	three_prime_UTR
Cucsa.079810.2.three_prime_UTR.1	Cucsa.079810.2.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.079810.2.CDS.12	Cucsa.079810.2.CDS.12	CDS
Cucsa.079810.2.CDS.11	Cucsa.079810.2.CDS.11	CDS
Cucsa.079810.2.CDS.10	Cucsa.079810.2.CDS.10	CDS
Cucsa.079810.2.CDS.9	Cucsa.079810.2.CDS.9	CDS
Cucsa.079810.2.CDS.8	Cucsa.079810.2.CDS.8	CDS
Cucsa.079810.2.CDS.7	Cucsa.079810.2.CDS.7	CDS
Cucsa.079810.2.CDS.6	Cucsa.079810.2.CDS.6	CDS
Cucsa.079810.2.CDS.5	Cucsa.079810.2.CDS.5	CDS
Cucsa.079810.2.CDS.4	Cucsa.079810.2.CDS.4	CDS
Cucsa.079810.2.CDS.3	Cucsa.079810.2.CDS.3	CDS
Cucsa.079810.2.CDS.2	Cucsa.079810.2.CDS.2	CDS
Cucsa.079810.2.CDS.1	Cucsa.079810.2.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.079810.2.five_prime_UTR.1	Cucsa.079810.2.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 130..148 score: 0.09coord: 347..374 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 447..492 score: 0.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 346..479 score: 1.2E-136coord: 565..582 score: 1.2E-136coord: 528..547 score: 1.2E-136coord: 59..197 score: 1.2E
None	No IPR available	PANTHER	PTHR24015:SF450	SUBFAMILY NOT NAMED	coord: 565..582 score: 1.2E-136coord: 59..197 score: 1.2E-136coord: 528..547 score: 1.2E-136coord: 346..479 score: 1.2E