Cucsa.079200.1 (mRNA) Cucumber (Gy14) v1

NameCucsa.079200.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptiontracheary element differentiation-related 7
Locationscaffold00793 : 1816954 .. 1817427 (-)
Sequence length474
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTGTTGACACCAAAAATGGCCGTTGAAAATAGTTCCAACCTCCCTCGAATCCCTCCGCCTCCACCTTTTAAGCCATCGCCCTTATCTCCACCGCCGTCGCCCGACGGTCACACAGCAATCATTGTAATCGTTTTTATTTCCTTAGGCTCTTGCCTTTTCTTCGTCGCTTTCGTTGCAGCTGCCGTTTGTTGCTTTATCAAAAAGAGAAAGAAGAAGTCATGTCCTCAAGAAGTTGTAGAGGCCATCCATATCGATGGACATCGGAAAGTCCACGAAGATGTTGCTGAGGTCGGTCATGGGCAGCAGGCAGTGGTGGTGACGATCGAGGATGATCTTCACATAGACGAAATTGTTAAGAAGAAAGAGCATGGACATGGACATGGCTTGCATGGTAAGCAACATGAAGGAGGCAGCCATAATAATAATTCTACCACAATGGAAGTAGCAGCTTCTTCTTCTAGTACTTCTTGA

mRNA sequence

TCTTTGTTGACACCAAAAATGGCCGTTGAAAATAGTTCCAACCTCCCTCGAATCCCTCCGCCTCCACCTTTTAAGCCATCGCCCTTATCTCCACCGCCGTCGCCCGACGGTCACACAGCAATCATTGTAATCGTTTTTATTTCCTTAGGCTCTTGCCTTTTCTTCGTCGCTTTCGTTGCAGCTGCCGTTTGTTGCTTTATCAAAAAGAGAAAGAAGAAGTCATGTCCTCAAGAAGTTGTAGAGGCCATCCATATCGATGGACATCGGAAAGTCCACGAAGATGTTGCTGAGGTCGGTCATGGGCAGCAGGCAGTGGTGGTGACGATCGAGGATGATCTTCACATAGACGAAATTGTTAAGAAGAAAGAGCATGGACATGGACATGGCTTGCATGGTAAGCAACATGAAGGAGGCAGCCATAATAATAATTCTACCACAATGGAAGTAGCAGCTTCTTCTTCTAGTACTTCTTGA

Coding sequence (CDS)

TCTTTGTTGACACCAAAAATGGCCGTTGAAAATAGTTCCAACCTCCCTCGAATCCCTCCGCCTCCACCTTTTAAGCCATCGCCCTTATCTCCACCGCCGTCGCCCGACGGTCACACAGCAATCATTGTAATCGTTTTTATTTCCTTAGGCTCTTGCCTTTTCTTCGTCGCTTTCGTTGCAGCTGCCGTTTGTTGCTTTATCAAAAAGAGAAAGAAGAAGTCATGTCCTCAAGAAGTTGTAGAGGCCATCCATATCGATGGACATCGGAAAGTCCACGAAGATGTTGCTGAGGTCGGTCATGGGCAGCAGGCAGTGGTGGTGACGATCGAGGATGATCTTCACATAGACGAAATTGTTAAGAAGAAAGAGCATGGACATGGACATGGCTTGCATGGTAAGCAACATGAAGGAGGCAGCCATAATAATAATTCTACCACAATGGAAGTAGCAGCTTCTTCTTCTAGTACTTCTTGA

Protein sequence

SLLTPKMAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQHEGGSHNNNSTTMEVAASSSSTS*
BLAST of Cucsa.079200.1 vs. TrEMBL
Match: A0A0A0K4D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G320040 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

Query: 7   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 66
           MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF
Sbjct: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 60

Query: 67  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 126
           IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH
Sbjct: 61  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 120

Query: 127 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 158
           GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS
Sbjct: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 151

BLAST of Cucsa.079200.1 vs. TrEMBL
Match: W9RTU8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023880 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-26
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 1

Query: 16  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 75
           P +PP PP +P PL P PPSPD H  +IVIVFIS+G  +FF+AF+AAA+ CF+KKRKK++
Sbjct: 57  PPLPPRPPVQPPPLPPRPPSPDNHPTVIVIVFISVGG-VFFLAFLAAALFCFLKKRKKRT 116

Query: 76  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 135
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 117 VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 176

Query: 136 HEG-----GSHNNN 144
            EG     GSH ++
Sbjct: 177 VEGNIASSGSHQHH 186

BLAST of Cucsa.079200.1 vs. TrEMBL
Match: W9QU73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007306 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-26
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 1

Query: 16  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 75
           P +PP PP +P PL P PPSPD H  +IV+VFIS+G  +FF+AF+AAA+ CF+KKRKKK+
Sbjct: 38  PPLPPHPPVQPPPLPPRPPSPDNHPTVIVVVFISVGG-VFFLAFLAAALFCFLKKRKKKT 97

Query: 76  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 135
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 98  VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 157

Query: 136 HEGGSHNNNS 145
            EG   ++ S
Sbjct: 158 VEGNIASSGS 163

BLAST of Cucsa.079200.1 vs. TrEMBL
Match: M5VIZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = 1

Query: 16  PRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSC 75
           P + PPPP    PL P PSPD +  +I+IVFISLGS +FF+AF+A A+ C+IK+RKKK+ 
Sbjct: 73  PHVRPPPP----PLPPSPSPDNNPTVIIIVFISLGS-VFFLAFLAFALLCWIKRRKKKTI 132

Query: 76  PQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGK 134
            +   + IHID HRK+ E + E  +G QAVV+++EDD+HIDE ++K E     GLHGK
Sbjct: 133 QE--TDIIHIDKHRKIKEKIVEGPYGPQAVVLSVEDDVHIDEEIRKNETIGHKGLHGK 183

BLAST of Cucsa.079200.1 vs. TrEMBL
Match: M5VIZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.3e-06
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query: 72  KKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLH 131
           K S  Q   E I+ D H+KV ED+    +G +AVV+TIEDD+H+DE+V+K E   G GLH
Sbjct: 185 KSSDVQAETEIINFDEHKKVKEDIVGGPYGSKAVVLTIEDDVHMDEVVRKNER-VGKGLH 243


HSP 2 Score: 119.4 bits (298), Expect = 4.0e-24
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 1

Query: 16  PRIPPPPPFKPSPLSPPPSPDGH-TAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 75
           P  PPPP  +PSP  P PSP  + T  IVIVF+S G  +FF+AF+AA +CCF+KK+KKK 
Sbjct: 38  PPPPPPPHVRPSPPPPAPSPSNNSTTTIVIVFVSFGG-VFFLAFLAACLCCFLKKKKKKK 97

Query: 76  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKE 124
             +E  E IH+D H+K+ E + E  HG QA+V+ IEDD+H+DE++KK+E
Sbjct: 98  EIKET-ELIHVDEHKKIKEAIVEGPHGPQAIVLEIEDDVHVDEVIKKEE 144

BLAST of Cucsa.079200.1 vs. TAIR10
Match: AT5G48920.1 (AT5G48920.1 tracheary element differentiation-related 7)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-20
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1

Query: 16  PRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSC 75
           P  PPPPP    P  P P+P  H  +I++V ISLGS LFF+AF+AAA+ C++KKR+K S 
Sbjct: 74  PHQPPPPPHVLPPPPPTPAPGHH--VIIVVVISLGS-LFFLAFLAAALFCYLKKRRKSST 133

Query: 76  PQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKE 124
             E++E    D H KV E + +  HG+Q  VV +E+D+H+ E + K E
Sbjct: 134 KAEIIE---FDEHLKVQETIVQGPHGEQTRVVMLEEDIHLVEDIHKTE 175

BLAST of Cucsa.079200.1 vs. TAIR10
Match: AT1G43790.1 (AT1G43790.1 tracheary element differentiation-related 6)

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-16
Identity = 39/93 (41.94%), Postives = 66/93 (70.97%), Query Frame = 1

Query: 31  PPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSCPQEVVEAIHIDGHRK 90
           P P+PD  T ++V+VF+SLG C+ F+AF+A  +   IKKR +K   +E  EA+ +D H K
Sbjct: 10  PTPTPDHDTTVVVVVFVSLG-CVMFLAFLAFVIWFLIKKRSRKH--RERSEAVRVDEHFK 69

Query: 91  VHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKE 124
           + E + E  +GQ++VV+++EDD+ I++ +K++E
Sbjct: 70  MKEAIVEGPNGQKSVVLSVEDDVKIEDAIKREE 99

BLAST of Cucsa.079200.1 vs. NCBI nr
Match: gi|700189272|gb|KGN44505.1| (hypothetical protein Csa_7G320040 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

Query: 7   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 66
           MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF
Sbjct: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 60

Query: 67  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 126
           IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH
Sbjct: 61  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 120

Query: 127 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 158
           GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS
Sbjct: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 151

BLAST of Cucsa.079200.1 vs. NCBI nr
Match: gi|659123107|ref|XP_008461492.1| (PREDICTED: uncharacterized protein LOC103500076 [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 3.1e-78
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 1

Query: 7   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 66
           MAVENSSNL RIPPPPPFKPSPL PPPSPDGHTAIIVIVFISLGSCLFFVAFVA  VCCF
Sbjct: 1   MAVENSSNLNRIPPPPPFKPSPLPPPPSPDGHTAIIVIVFISLGSCLFFVAFVATVVCCF 60

Query: 67  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 126
           IKKRKKKSCPQEVVEAI IDGHRKVHEDVAEVGHGQQA+VVTIEDD+HIDEIVKKKEHGH
Sbjct: 61  IKKRKKKSCPQEVVEAIRIDGHRKVHEDVAEVGHGQQAMVVTIEDDVHIDEIVKKKEHGH 120

Query: 127 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 158
           GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS
Sbjct: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 151

BLAST of Cucsa.079200.1 vs. NCBI nr
Match: gi|703078084|ref|XP_010090776.1| (hypothetical protein L484_007306 [Morus notabilis])

HSP 1 Score: 125.6 bits (314), Expect = 7.9e-26
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 1

Query: 16  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 75
           P +PP PP +P PL P PPSPD H  +IV+VFIS+G  +FF+AF+AAA+ CF+KKRKKK+
Sbjct: 38  PPLPPHPPVQPPPLPPRPPSPDNHPTVIVVVFISVGG-VFFLAFLAAALFCFLKKRKKKT 97

Query: 76  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 135
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 98  VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 157

Query: 136 HEGGSHNNNS 145
            EG   ++ S
Sbjct: 158 VEGNIASSGS 163

BLAST of Cucsa.079200.1 vs. NCBI nr
Match: gi|703103476|ref|XP_010097739.1| (hypothetical protein L484_023880 [Morus notabilis])

HSP 1 Score: 125.6 bits (314), Expect = 7.9e-26
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 1

Query: 16  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 75
           P +PP PP +P PL P PPSPD H  +IVIVFIS+G  +FF+AF+AAA+ CF+KKRKK++
Sbjct: 57  PPLPPRPPVQPPPLPPRPPSPDNHPTVIVIVFISVGG-VFFLAFLAAALFCFLKKRKKRT 116

Query: 76  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 135
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 117 VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 176

Query: 136 HEG-----GSHNNN 144
            EG     GSH ++
Sbjct: 177 VEGNIASSGSHQHH 186

BLAST of Cucsa.079200.1 vs. NCBI nr
Match: gi|694405787|ref|XP_009377729.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Pyrus x bretschneideri])

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1

Query: 17  RIPPPPPFKPSP--LSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 76
           R PPPP  +P P  L P P+PD H  +IVIVFISLGS +FF+AF+A A+ C+IK+RKKK+
Sbjct: 122 RPPPPPHVRPPPPQLPPSPTPDNHPTVIVIVFISLGS-VFFLAFLAVALLCYIKRRKKKT 181

Query: 77  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 136
             +   + IHID HRK+ E + E  +G QAV++++EDD+HIDE ++K E     GLHGK 
Sbjct: 182 IQE--TDFIHIDKHRKIKEAIVEGPNGPQAVLLSVEDDVHIDEEIRKNETISHEGLHGKV 241

Query: 137 HEGG 139
              G
Sbjct: 242 KSSG 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K4D1_CUCSA1.4e-82100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G320040 PE=4 SV=1[more]
W9RTU8_9ROSA5.5e-2649.25Uncharacterized protein OS=Morus notabilis GN=L484_023880 PE=4 SV=1[more]
W9QU73_9ROSA5.5e-2649.23Uncharacterized protein OS=Morus notabilis GN=L484_007306 PE=4 SV=1[more]
M5VIZ2_PRUPE1.0e-2452.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1[more]
M5VIZ2_PRUPE8.3e-0650.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G48920.12.4e-2046.30 tracheary element differentiation-related 7[more]
AT1G43790.13.5e-1641.94 tracheary element differentiation-related 6[more]
Match NameE-valueIdentityDescription
gi|700189272|gb|KGN44505.1|2.1e-82100.00hypothetical protein Csa_7G320040 [Cucumis sativus][more]
gi|659123107|ref|XP_008461492.1|3.1e-7895.36PREDICTED: uncharacterized protein LOC103500076 [Cucumis melo][more]
gi|703078084|ref|XP_010090776.1|7.9e-2649.23hypothetical protein L484_007306 [Morus notabilis][more]
gi|703103476|ref|XP_010097739.1|7.9e-2649.25hypothetical protein L484_023880 [Morus notabilis][more]
gi|694405787|ref|XP_009377729.1|1.4e-2551.61PREDICTED: proline-rich receptor-like protein kinase PERK2 [Pyrus x bretschneide... [more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom_sf
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009834 plant-type secondary cell wall biogenesis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.079200Cucsa.079200gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.079200.1Cucsa.079200.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.079200.1.CDS.1Cucsa.079200.1.CDS.1CDS


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013320Concanavalin A-like lectin/glucanase domainGENE3DG3DSA:2.60.120.200coord: 11..81
score: 3.
NoneNo IPR availablePANTHERPTHR35697FAMILY NOT NAMEDcoord: 16..123
score: 3.5
NoneNo IPR availablePANTHERPTHR35697:SF1SUBFAMILY NOT NAMEDcoord: 16..123
score: 3.5