Cucsa.056280.3 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.056280.3
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L17
Location	scaffold00602 : 436448 .. 438512 (+)
Sequence length	867

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCGTTCACGGCCAAATCCAACTTTGTTTCTTCACAACCCCAAGTTGCAGCCGTCGCCATGGTTCTTCTTCTTCTTCTTTTTCTCTCTTCTTGATTTCACCTTCCAAACAATGCCTATCTCCGTTTCAAGTTAGCGACTAATCTTATATTACTGTTTTTGTTCATTGTTGCAGGTGAAGTATTCCAGGGAACCAGACAATCCCACCAAGTGtATTTTTCTTTtCCACACTTTTCTTTTATGGATCTTCTTTGATTTCTATTCAAAACGTTGCATTTGATGTGATTGTTGCATACTAGTTTGAGTTTTTTTTttttACTTCAGAGATGTTTTCGCCCTGTACTGACACCCAGTTGTTCTTCCTTTCAGCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGGTAGGTTTTATTCCACTTCGTTGCTCTGTTGTCGTTTGGATTAACAATCACCTAGGGTATTTTTATGCTCCAATTTTGGTTATGGATCCTAATTTTTTTttCTGGAGCATAATTGTCTGTTTCCTTTGATGTGCTCCTTTGTGTTATTGAATGTCTACCAAATGTATAAATATACTCGATCCAATACCATATTCTCTCTTTGACTCAAGTAATCGTTTGGTCTAAGTGAAAATATAATAGTGTTTGTTCTTGACGCCATCTTAAGACATTCCTTTCTCGTAACAATCGGTTTCCGTATAGGAGCTTCTTATTTTTCCAGGCTTGAGAGAGCTAATGTTGGTATTATTCTTGTGATGACTTATTCTGATGAGATTAGTATAAGTTTCTTAGGTGAAGAAATAACTTATCTTAGACTTGTGTAACCTGATGATAAAAGCAGGGCTCTGTTGCCTTTAGTGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCATTGTTATTGGGTGAACCTCTGTAAACAATAATTTCTGAAGGTTCAGTAAATGATGCTACATTACATATCTAAGCTTGTACTTTGATTTGCATATTTTAGCACCGAATTTCCGTTGCTCGGACTCATCACAATTTTTCCATTTCACATATTATAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTATGTCTTTCTTTTTCTGTTGCACTTTACCATTAACTGTTGTTTATCTTTAACTCCTCTTGCTCATAATTATTTCTCCTCTTTCAGGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCGTATGTTCTGATTACAATTTACTTATATTTGTATGAATTCACTTCAAACTATTCTGTCTAATCTCCAACTTTTTGCTATCTGCTTTTCAGCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGGTATCATATATATCAATATTTACTTTTTtCACCGTTGTGTTGTAAAGGATAGTTTTGTTTAGACCTATTTCTTATTTTGTTGTAATTCATGATGTTGTTACAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGAATGGCCTAAGTAGAAATTCTGTTGTGGGTTTTTGCTGTGCCATTTCTTTTTCTTTTTGAAGTGAGTTTAATTATTGATCAGATCACTATATAGAACGAGGGATTATTATTTAGATGTTTTGTGTGACAATGTTATATTTGGAACCTTTCGTAGTTCAATTTTCTTCAAGTTTAAATCACATTCTCGTACTTTTGCGTTCATTCTTTGATTACACAAGGCCGGTTTGGAATAGTTGTTTGAGTGCTTACCAAAGCTT

mRNA sequence

CTCCGTTCACGGCCAAATCCAACTTTGTTTCTTCACAACCCCAAGTTGCAGCCGTCGCCATGGTGAAGTATTCCAGGGAACCAGACAATCCCACCAAGTCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGAATGGCCTAAGTAGAAATTCTGTTGTGGGTTTTTGCTGTGCCATTTCTTTTTCTTTTTGAAGTGAGTTTAATTATTGATCAGATCACTATATAGAACGAGGGATTATTATTTAGATGTTTTGTGTGACAATGTTATATTTGGAACCTTTCGTAGTTCAATTTTCTTCAAGTTTAAATCACATTCTCGTACTTTTGCGTTCATTCTTTGATTACACAAGGCCGGTTTGGAATAGTTGTTTGAGTGCTTACCAAAGCTT

Coding sequence (CDS)

ATGGTGAAGTATTCCAGGGAACCAGACAATCCCACCAAGTCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGA

Protein sequence

MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS*

Homology

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BLAST of Cucsa.056280.3 vs. Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-85
Identity = 156/176 (88.64%), Postives = 163/176 (92.61%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Cucsa.056280.3 vs. Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.0e-85
Identity = 155/174 (89.08%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Cucsa.056280.3 vs. Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.5e-81
Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD L+VSH+QV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Cucsa.056280.3 vs. Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-78
Identity = 141/167 (84.43%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Cucsa.056280.3 vs. Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.0e-78
Identity = 140/170 (82.35%), Postives = 153/170 (90.00%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

[Close]

BLAST of Cucsa.056280.3 vs. TrEMBL
Match: A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.0e-95
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Cucsa.056280.3 vs. TrEMBL
Match: A0A061E6A4_THECC (Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_008866 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 4.7e-93
Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA  K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQALRSG 180

Query: 181 ASS 184
            SS
Sbjct: 181 VSS 183

[Close]

BLAST of Cucsa.056280.3 vs. TrEMBL
Match: I3NMN7_HEVBR (60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 4.7e-93
Identity = 171/183 (93.44%), Postives = 176/183 (96.17%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREP+N TKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA  K KK QAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Cucsa.056280.3 vs. TrEMBL
Match: A5B412_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.2e-92
Identity = 168/183 (91.80%), Postives = 174/183 (95.08%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVL HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNA++KGLDVD L++SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK  A+R G
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSHAVRGG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Cucsa.056280.3 vs. TrEMBL
Match: A0A0A0KIM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365170 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.6e-91
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 1


Query: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74

Query: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 133
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA
Sbjct: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134

Query: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184

[Close]

BLAST of Cucsa.056280.3 vs. TAIR10
Match: AT1G67430.1 (AT1G67430.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 317.0 bits (811), Expect = 7.6e-87
Identity = 156/176 (88.64%), Postives = 163/176 (92.61%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Cucsa.056280.3 vs. TAIR10
Match: AT1G27400.1 (AT1G27400.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 315.8 bits (808), Expect = 1.7e-86
Identity = 155/174 (89.08%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Cucsa.056280.3 vs. NCBI nr
Match: gi|449452899|ref|XP_004144196.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus])

HSP 1 Score: 371.3 bits (952), Expect = 9.7e-100
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Cucsa.056280.3 vs. NCBI nr
Match: gi|659089418|ref|XP_008445497.1| (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 1.4e-98
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Cucsa.056280.3 vs. NCBI nr
Match: gi|659090496|ref|XP_008446047.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 7.2e-95
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Cucsa.056280.3 vs. NCBI nr
Match: gi|1009152998|ref|XP_015894398.1| (PREDICTED: 60S ribosomal protein L17-2 [Ziziphus jujuba])

HSP 1 Score: 351.7 bits (901), Expect = 7.9e-94
Identity = 173/183 (94.54%), Postives = 177/183 (96.72%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L+VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Cucsa.056280.3 vs. NCBI nr
Match: gi|802724253|ref|XP_012085663.1| (PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas])

HSP 1 Score: 350.9 bits (899), Expect = 1.4e-93
Identity = 170/183 (92.90%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNSTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSA+FILDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           A+S
Sbjct: 181 AAS 183

The following BLAST results are available for this feature:

BLAST of Cucsa.056280.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL172_ARATH	1.4e-85	88.64	60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2	[more]
RL171_ARATH	3.0e-85	89.08	60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1	[more]
RL17_MAIZE	3.5e-81	86.47	60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1	[more]
RL171_HORVU	2.1e-78	84.43	60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1	[more]
RL172_HORVU	8.0e-78	82.35	60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1	[more]

BLAST of Cucsa.056280.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPZ4_CUCSA	5.0e-95	95.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1	[more]
A0A061E6A4_THECC	4.7e-93	92.90	Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_0...	[more]
I3NMN7_HEVBR	4.7e-93	93.44	60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1	[more]
A5B412_VITVI	5.2e-92	91.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1	[more]
A0A0A0KIM9_CUCSA	2.6e-91	99.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365170 PE=3 SV=1	[more]

BLAST of Cucsa.056280.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67430.1	7.6e-87	88.64	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	1.7e-86	89.08	Ribosomal protein L22p/L17e family protein	[more]

BLAST of Cucsa.056280.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452899\|ref\|XP_004144196.1\|	9.7e-100	100.00	PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus]	[more]
gi\|659089418\|ref\|XP_008445497.1\|	1.4e-98	98.91	PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]	[more]
gi\|659090496\|ref\|XP_008446047.1\|	7.2e-95	95.63	PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo]	[more]
gi\|1009152998\|ref\|XP_015894398.1\|	7.9e-94	94.54	PREDICTED: 60S ribosomal protein L17-2 [Ziziphus jujuba]	[more]
gi\|802724253\|ref\|XP_012085663.1\|	1.4e-93	92.90	PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001063	Ribosomal_L22
IPR005721	Ribosomal_L22/L17_euk/arc
IPR018260	Ribosomal_L22/L17_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.056280	Cucsa.056280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.3	Cucsa.056280.3-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.3.five_prime_UTR.1	Cucsa.056280.3.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.3.CDS.1	Cucsa.056280.3.CDS.1	CDS
Cucsa.056280.3.CDS.2	Cucsa.056280.3.CDS.2	CDS
Cucsa.056280.3.CDS.3	Cucsa.056280.3.CDS.3	CDS
Cucsa.056280.3.CDS.4	Cucsa.056280.3.CDS.4	CDS
Cucsa.056280.3.CDS.5	Cucsa.056280.3.CDS.5	CDS
Cucsa.056280.3.CDS.6	Cucsa.056280.3.CDS.6	CDS
Cucsa.056280.3.CDS.7	Cucsa.056280.3.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.3.three_prime_UTR.1	Cucsa.056280.3.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001063	Ribosomal protein L22/L17	GENE3D	G3DSA:3.90.470.10		coord: 1..157 score: 5.8
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 19..151 score: 1.2
IPR001063	Ribosomal protein L22/L17	unknown	SSF54843	Ribosomal protein L22	coord: 1..154 score: 3.92
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	HAMAP	MF_01331_A	Ribosomal_L22_A	coord: 2..154 score: 2
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 2..170 score: 1.9E
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAMs	TIGR01038	TIGR01038	coord: 4..154 score: 9.3
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 127..151 scor