Cucsa.056280.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.056280.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L17
Location	scaffold00602 : 436691 .. 438512 (+)
Sequence length	893

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTCTTTGATTTCTATTCAAAACGTTGCATTTGATGTGATTGTTGCATACTAGTTTGAGTTTTTTTTttttACTTCAGAGATGTTTTCGCCCTGTACTGACACCCAGTTGTTCTTCCTTTCAGCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGGTAGGTTTTATTCCACTTCGTTGCTCTGTTGTCGTTTGGATTAACAATCACCTAGGGTATTTTTATGCTCCAATTTTGGTTATGGATCCTAATTTTTTTttCTGGAGCATAATTGTCTGTTTCCTTTGATGTGCTCCTTTGTGTTATTGAATGTCTACCAAATGTATAAATATACTCGATCCAATACCATATTCTCTCTTTGACTCAAGTAATCGTTTGGTCTAAGTGAAAATATAATAGTGTTTGTTCTTGACGCCATCTTAAGACATTCCTTTCTCGTAACAATCGGTTTCCGTATAGGAGCTTCTTATTTTTCCAGGCTTGAGAGAGCTAATGTTGGTATTATTCTTGTGATGACTTATTCTGATGAGATTAGTATAAGTTTCTTAGGTGAAGAAATAACTTATCTTAGACTTGTGTAACCTGATGATAAAAGCAGGGCTCTGTTGCCTTTAGTGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCATTGTTATTGGGTGAACCTCTGTAAACAATAATTTCTGAAGGTTCAGTAAATGATGCTACATTACATATCTAAGCTTGTACTTTGATTTGCATATTTTAGCACCGAATTTCCGTTGCTCGGACTCATCACAATTTTTCCATTTCACATATTATAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTATGTCTTTCTTTTTCTGTTGCACTTTACCATTAACTGTTGTTTATCTTTAACTCCTCTTGCTCATAATTATTTCTCCTCTTTCAGGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCGTATGTTCTGATTACAATTTACTTATATTTGTATGAATTCACTTCAAACTATTCTGTCTAATCTCCAACTTTTTGCTATCTGCTTTTCAGCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGGTATCATATATATCAATATTTACTTTTTtCACCGTTGTGTTGTAAAGGATAGTTTTGTTTAGACCTATTTCTTATTTTGTTGTAATTCATGATGTTGTTACAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGAATGGCCTAAGTAGAAATTCTGTTGTGGGTTTTTGCTGTGCCATTTCTTTTTCTTTTTGAAGTGAGTTTAATTATTGATCAGATCACTATATAGAACGAGGGATTATTATTTAGATGTTTTGTGTGACAATGTTATATTTGGAACCTTTCGTAGTTCAATTTTCTTCAAGTTTAAATCACATTCTCGTACTTTTGCGTTCATTCTTTGATTACACAAGGCCGGTTTGGAATAGTTGTTTGAGTGCTTACCAAAGCTT

mRNA sequence

ATCTTCTTTGATTTCTATTCAAAACGTTGCATTTGATGTGATTGTTGCATACTAGTTTGAGTTTTTTTTTTTTACTTCAGAGATGTTTTCGCCCTGTACTGACACCCAGTTGTTCTTCCTTTCAGCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGAATGGCCTAAGTAGAAATTCTGTTGTGGGTTTTTGCTGTGCCATTTCTTTTTCTTTTTGAAGTGAGTTTAATTATTGATCAGATCACTATATAGAACGAGGGATTATTATTTAGATGTTTTGTGTGACAATGTTATATTTGGAACCTTTCGTAGTTCAATTTTCTTCAAGTTTAAATCACATTCTCGTACTTTTGCGTTCATTCTTTGATTACACAAGGCCGGTTTGGAATAGTTGTTTGAGTGCTTACCAAAGCTT

Coding sequence (CDS)

ATGTTTTCGCCCTGTACTGACACCCAGTTGTTCTTCCTTTCAGCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGA

Protein sequence

MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS*

Homology

[Close]

BLAST of Cucsa.056280.2 vs. Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-78
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 178
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Cucsa.056280.2 vs. Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.7e-78
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 176
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Cucsa.056280.2 vs. Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 7.0e-74
Identity = 135/157 (85.99%), Postives = 146/157 (92.99%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           + KA G DLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQA
Sbjct: 14  SAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           K+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD L+VSH+QVNQAQKQRRRTYRA
Sbjct: 74  KSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 172
           HGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Cucsa.056280.2 vs. Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.6e-72
Identity = 130/154 (84.42%), Postives = 141/154 (91.56%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           + KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ 
Sbjct: 14  SAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQV 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD L++SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 169
           HGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Cucsa.056280.2 vs. Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-70
Identity = 128/157 (81.53%), Postives = 141/157 (89.81%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           + KA G DLRVHFKNTRETA A+R++PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ 
Sbjct: 14  SAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQV 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L++SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 172
           HGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

[Close]

BLAST of Cucsa.056280.2 vs. TrEMBL
Match: A0A0A0KIM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365170 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 1.8e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60
           MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP
Sbjct: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60

Query: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120
           FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ
Sbjct: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120

Query: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180
           VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS
Sbjct: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180

Query: 181 GASS 185
           GASS
Sbjct: 181 GASS 184

[Close]

BLAST of Cucsa.056280.2 vs. TrEMBL
Match: A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.9e-86
Identity = 161/170 (94.71%), Postives = 165/170 (97.06%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 183

[Close]

BLAST of Cucsa.056280.2 vs. TrEMBL
Match: I3NMN7_HEVBR (60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 7.3e-86
Identity = 159/170 (93.53%), Postives = 164/170 (96.47%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDV+AHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L +SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLA  K KK QAIRSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSGASS 183

[Close]

BLAST of Cucsa.056280.2 vs. TrEMBL
Match: A0A061E6A4_THECC (Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_008866 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.8e-84
Identity = 156/170 (91.76%), Postives = 162/170 (95.29%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVMAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L++SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLA  K KK QA+RSG SS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQALRSGVSS 183

[Close]

BLAST of Cucsa.056280.2 vs. TrEMBL
Match: A5B412_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.0e-83
Identity = 154/170 (90.59%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVL HKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNA++KGLDVD L++SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK  A+R GASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSHAVRGGASS 183

[Close]

BLAST of Cucsa.056280.2 vs. TAIR10
Match: AT1G67430.1 (AT1G67430.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 293.1 bits (749), Expect = 1.2e-79
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 178
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Cucsa.056280.2 vs. TAIR10
Match: AT1G27400.1 (AT1G27400.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 292.7 bits (748), Expect = 1.5e-79
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 176
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Cucsa.056280.2 vs. NCBI nr
Match: gi|700192412|gb|KGN47616.1| (hypothetical protein Csa_6G365170 [Cucumis sativus])

HSP 1 Score: 373.2 bits (957), Expect = 2.6e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60
           MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP
Sbjct: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60

Query: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120
           FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ
Sbjct: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120

Query: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180
           VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS
Sbjct: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180

Query: 181 GASS 185
           GASS
Sbjct: 181 GASS 184

[Close]

BLAST of Cucsa.056280.2 vs. NCBI nr
Match: gi|449452899|ref|XP_004144196.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 3.7e-91
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 183

[Close]

BLAST of Cucsa.056280.2 vs. NCBI nr
Match: gi|659089418|ref|XP_008445497.1| (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 5.3e-90
Identity = 167/170 (98.24%), Postives = 169/170 (99.41%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 183

[Close]

BLAST of Cucsa.056280.2 vs. NCBI nr
Match: gi|659090496|ref|XP_008446047.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo])

HSP 1 Score: 326.6 bits (836), Expect = 2.7e-86
Identity = 161/170 (94.71%), Postives = 165/170 (97.06%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 183

[Close]

BLAST of Cucsa.056280.2 vs. NCBI nr
Match: gi|802724253|ref|XP_012085663.1| (PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas])

HSP 1 Score: 325.5 bits (833), Expect = 6.1e-86
Identity = 157/170 (92.35%), Postives = 166/170 (97.65%), Query Frame = 1


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDV+AHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSA+FILDLLKNAESNAEVKGLDVD L++SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 185
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSGA+S
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSGAAS 183

The following BLAST results are available for this feature:

BLAST of Cucsa.056280.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL172_ARATH	2.1e-78	88.34	60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2	[more]
RL171_ARATH	2.7e-78	88.82	60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1	[more]
RL17_MAIZE	7.0e-74	85.99	60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1	[more]
RL171_HORVU	8.6e-72	84.42	60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1	[more]
RL172_HORVU	2.8e-70	81.53	60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1	[more]

BLAST of Cucsa.056280.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIM9_CUCSA	1.8e-100	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365170 PE=3 SV=1	[more]
A0A0A0KPZ4_CUCSA	1.9e-86	94.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1	[more]
I3NMN7_HEVBR	7.3e-86	93.53	60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1	[more]
A0A061E6A4_THECC	1.8e-84	91.76	Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_0...	[more]
A5B412_VITVI	2.0e-83	90.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1	[more]

BLAST of Cucsa.056280.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67430.1	1.2e-79	88.34	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	1.5e-79	88.82	Ribosomal protein L22p/L17e family protein	[more]

BLAST of Cucsa.056280.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192412\|gb\|KGN47616.1\|	2.6e-100	100.00	hypothetical protein Csa_6G365170 [Cucumis sativus]	[more]
gi\|449452899\|ref\|XP_004144196.1\|	3.7e-91	99.41	PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus]	[more]
gi\|659089418\|ref\|XP_008445497.1\|	5.3e-90	98.24	PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]	[more]
gi\|659090496\|ref\|XP_008446047.1\|	2.7e-86	94.71	PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo]	[more]
gi\|802724253\|ref\|XP_012085663.1\|	6.1e-86	92.35	PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001063	Ribosomal_L22
IPR005721	Ribosomal_L22/L17_euk/arc
IPR018260	Ribosomal_L22/L17_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.056280	Cucsa.056280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.2	Cucsa.056280.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.2.five_prime_UTR.1	Cucsa.056280.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.2.CDS.1	Cucsa.056280.2.CDS.1	CDS
Cucsa.056280.2.CDS.2	Cucsa.056280.2.CDS.2	CDS
Cucsa.056280.2.CDS.3	Cucsa.056280.2.CDS.3	CDS
Cucsa.056280.2.CDS.4	Cucsa.056280.2.CDS.4	CDS
Cucsa.056280.2.CDS.5	Cucsa.056280.2.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.056280.2.three_prime_UTR.1	Cucsa.056280.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001063	Ribosomal protein L22/L17	GENE3D	G3DSA:3.90.470.10		coord: 15..158 score: 7.2
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 20..152 score: 1.2
IPR001063	Ribosomal protein L22/L17	unknown	SSF54843	Ribosomal protein L22	coord: 15..155 score: 7.46
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 15..171 score: 5.0E
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAMs	TIGR01038	TIGR01038	coord: 15..155 score: 1.1
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 128..152 scor