Cucsa.041850.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.041850.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold00540 : 372446 .. 372628 (-)
Sequence length	183

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGCATGCTCTGCACCTGCCTCATTCTCGTCGTTGTCGCCATCGGTTTGCTCTTTGGATTCGGAGTTTTCAAAGATGGATTTCATAAGATTAAAGATAAAGTCGATTTCTGCGATGGAGGTCCCTGCGGCGGCGGTGGACACGGCTCTTTCTCCCCTGCACCTCCGCCTCCTCCGTTCTAG

mRNA sequence

GTTTGCATGCTCTGCACCTGCCTCATTCTCGTCGTTGTCGCCATCGGTTTGCTCTTTGGATTCGGAGTTTTCAAAGATGGATTTCATAAGATTAAAGATAAAGTCGATTTCTGCGATGGAGGTCCCTGCGGCGGCGGTGGACACGGCTCTTTCTCCCCTGCACCTCCGCCTCCTCCGTTCTAG

Coding sequence (CDS)

GTTTGCATGCTCTGCACCTGCCTCATTCTCGTCGTTGTCGCCATCGGTTTGCTCTTTGGATTCGGAGTTTTCAAAGATGGATTTCATAAGATTAAAGATAAAGTCGATTTCTGCGATGGAGGTCCCTGCGGCGGCGGTGGACACGGCTCTTTCTCCCCTGCACCTCCGCCTCCTCCGTTCTAG

Protein sequence

VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF*

Homology

[Close]

BLAST of Cucsa.041850.1 vs. TrEMBL
Match: A0A0A0L2S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 7.1e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF 60
          VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF
Sbjct: 7  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF 66

[Close]

BLAST of Cucsa.041850.1 vs. TrEMBL
Match: I1M6D3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G010700 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-16
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPP 58
          +CMLCTCL+LVV+AIGL+FGFGVFK GFHKIKD V FCD   CGGGG      APPP
Sbjct: 7  ICMLCTCLVLVVIAIGLVFGFGVFKHGFHKIKDTVSFCDS--CGGGGRPFIGYAPPP 61

[Close]

BLAST of Cucsa.041850.1 vs. TrEMBL
Match: I1JJM5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G303200 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.8e-16
Identity = 43/59 (72.88%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCD--GGPCGGGGHGSFSPAPPP 58
          VCMLCTCL+LVV+AIGLLFGFGVFK GFHKIKD V FCD  GG   GGG      APPP
Sbjct: 7  VCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAGGGRPFIGYAPPP 65

[Close]

BLAST of Cucsa.041850.1 vs. TrEMBL
Match: A0A151U2Q0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_006135 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-15
Identity = 44/59 (74.58%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGG--GGHGSFSPAPPP 58
          VCMLCTCLILVV+AIGLLFGFGVFK GFHKIKD V FCD   CGG  GG      APPP
Sbjct: 7  VCMLCTCLILVVLAIGLLFGFGVFKHGFHKIKDTVSFCDS--CGGAAGGRPFLGHAPPP 63

[Close]

BLAST of Cucsa.041850.1 vs. TrEMBL
Match: B9GHH9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s47340g PE=4 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-14
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 1   VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCD----GGPCGGGGHGSFS---- 60
           +CMLCTCLIL+V+ IGL FGFGVFK+GFHK+KD +D CD    G  CGGGG  S      
Sbjct: 60  MCMLCTCLILLVILIGLSFGFGVFKNGFHKLKDHLDVCDPNAIGSFCGGGGKASRPFLGF 119

[Close]

BLAST of Cucsa.041850.1 vs. TAIR10
Match: AT3G13275.1 (AT3G13275.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDF-CD-----GGPCGGGGHGSFSPA 55
          +CMLCTCL+LVV+AIG LFGFGVFKDGFHKI + +   CD     GG  G  G+G  +PA
Sbjct: 6  ICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRFGCGGGLGRRGYGFPAPA 65

[Close]

BLAST of Cucsa.041850.1 vs. NCBI nr
Match: gi|778675745|ref|XP_011650464.1| (PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-29
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF 60
          VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF
Sbjct: 7  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF 66

[Close]

BLAST of Cucsa.041850.1 vs. NCBI nr
Match: gi|659096270|ref|XP_008449006.1| (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPP 58
          +CMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGG CGGG    F PAPPP
Sbjct: 7  LCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGG--RPFFPAPPP 61

[Close]

BLAST of Cucsa.041850.1 vs. NCBI nr
Match: gi|571506235|ref|XP_006595678.1| (PREDICTED: uncharacterized protein LOC102665099 [Glycine max])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPP 58
          +CMLCTCL+LVV+AIGL+FGFGVFK GFHKIKD V FCD   CGGGG      APPP
Sbjct: 7  ICMLCTCLVLVVIAIGLVFGFGVFKHGFHKIKDTVSFCDS--CGGGGRPFIGYAPPP 61

[Close]

BLAST of Cucsa.041850.1 vs. NCBI nr
Match: gi|947125744|gb|KRH73950.1| (hypothetical protein GLYMA_02G303200 [Glycine max])

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-16
Identity = 43/59 (72.88%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCD--GGPCGGGGHGSFSPAPPP 58
          VCMLCTCL+LVV+AIGLLFGFGVFK GFHKIKD V FCD  GG   GGG      APPP
Sbjct: 7  VCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAGGGRPFIGYAPPP 65

[Close]

BLAST of Cucsa.041850.1 vs. NCBI nr
Match: gi|1012199904|ref|XP_015972894.1| (PREDICTED: uncharacterized protein LOC107496200 [Arachis duranensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  VCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFS-------P 58
          +CMLCTCL+LVV+AIG LFGFGVFK GFHK+KD V +CD   CGGGG G  S       P
Sbjct: 7  ICMLCTCLVLVVIAIGFLFGFGVFKHGFHKLKDSVSYCD--DCGGGGGGGGSGRPFLGYP 66

The following BLAST results are available for this feature:

BLAST of Cucsa.041850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2S1_CUCSA	7.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045170 PE=4 SV=1	[more]
I1M6D3_SOYBN	4.5e-16	71.93	Uncharacterized protein OS=Glycine max GN=GLYMA_14G010700 PE=4 SV=1	[more]
I1JJM5_SOYBN	5.8e-16	72.88	Uncharacterized protein OS=Glycine max GN=GLYMA_02G303200 PE=4 SV=1	[more]
A0A151U2Q0_CAJCA	4.9e-15	74.58	Uncharacterized protein OS=Cajanus cajan GN=KK1_006135 PE=4 SV=1	[more]
B9GHH9_POPTR	2.4e-14	61.76	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s47340g P...	[more]

BLAST of Cucsa.041850.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13275.1	6.4e-14	60.00	unknown protein	[more]

BLAST of Cucsa.041850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778675745\|ref\|XP_011650464.1\|	1.0e-29	100.00	PREDICTED: uncharacterized protein LOC105434787 [Cucumis sativus]	[more]
gi\|659096270\|ref\|XP_008449006.1\|	1.5e-20	87.72	PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo]	[more]
gi\|571506235\|ref\|XP_006595678.1\|	6.4e-16	71.93	PREDICTED: uncharacterized protein LOC102665099 [Glycine max]	[more]
gi\|947125744\|gb\|KRH73950.1\|	8.4e-16	72.88	hypothetical protein GLYMA_02G303200 [Glycine max]	[more]
gi\|1012199904\|ref\|XP_015972894.1\|	2.4e-15	65.63	PREDICTED: uncharacterized protein LOC107496200 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.041850	Cucsa.041850	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.041850.1	Cucsa.041850.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.041850.1.CDS.1	Cucsa.041850.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36753	FAMILY NOT NAMED	coord: 1..60 score: 2.9