Cucsa.036190.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.036190.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Auxin-responsive protein
Location	scaffold00464 : 201372 .. 202668 (+)
Sequence length	1005

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTAAGAGAAAAGGAACATGAGAGCAATTGGGTCGGCCAAAGGCAGAGCATTGATACGGACATCTTAGACGTTTTTCCGTTCTCTTTCCAACACTTTGTCCCCACCATCCTCATTCTTTGTCCCACACCCGCACGCACAACCCCTCTTCTCCTTTTAAACCCACATCCTCTTTCCAATTTCCATAATTCAAATTCATCTTTTGTTCTCACATTTTCTTCAATCAATCTCTTCCCCTACCTAATGGCTATGGAGCTTCAACTTGGTCTTGCTTTAATCCCCACCAATCCCATCAAACCCTTCGACTTAAACACCCATAACAACAATCCCATTTCCTTGGTTTTTGATTCTATCAATCACAAAAAGCGTTCTCGTCATCTCGACTCCCCTGCGACATTTCGTCAAACACTTCCTCTGCTTCTTTGGAATGACCATCCCAATGATGGCGATGACGATGACCCTAATGACCCCCATTCTGCCTCCTCTAATGATTCGTATGCCACTATCTCTTACTTTTTCTGTCTTTGATTTGGAGTTTTGATTTGATTTGGGCTGAATTTTTTtGGTTTGGTTGATTGAACAGAGACGAGGAGGAGGAAGAGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTTATGAAGGAAGGGGTTGGACGGAGAGCGGTGATCCGCCGTCCAGCGGTGAAGAACGACGGCGTGTTTTGGAGAGGATTGGATTTGAATAATTCTCGATACGTGAAAGTGAAGATGGAGGGAGTGGGAATTGCTAGGAAGGTTGATTTGAGGGAACATCATTCTTTTGATGCGCTTAGAGCTACTTTGATGAAGATGTTTGGTGAGCTTGTGTTTGAAACATACATGCATCTAATGATCACTCAAACATTAACCCACTGTTTAATGTTACAACTTCAAAACACATTTCAAGCGATTTTCAAATTGTGTCTGTTAACAGATGAAACGAATTCGGAGGGTTACAAACTCACTTTCCAGAATACCAAGGGTGAATGGTTACTTGCTGAGAACGTAACTTGGAGGTAAAGATAAAAAAGATGTCTGACATTTTGATCCACAATGGACATTATTATAAAAGTTAAAATGGGGGTTTTGATGATATGGACAGGAATTTCATCGGAACTGTTCAACGGATCAATCTGGAAAAGAAGTCCGGGTGATGAGTGATGAGTGATGAGGGTTTACCGGCGGTGGGTTGTCAGAGAATCGGATGCTGTCTAATTAAAATATATCTCTTATGTTTTTTTGTTTTAAAATAGCAG

mRNA sequence

ATGTGGGTAAGAGAAAAGGAACATGAGAGCAATTGGGTCGGCCAAAGGCAGAGCATTGATACGGACATCTTAGACGTTTTTCCGTTCTCTTTCCAACACTTTGTCCCCACCATCCTCATTCTTTGTCCCACACCCGCACGCACAACCCCTCTTCTCCTTTTAAACCCACATCCTCTTTCCAATTTCCATAATTCAAATTCATCTTTTGTTCTCACATTTTCTTCAATCAATCTCTTCCCCTACCTAATGGCTATGGAGCTTCAACTTGGTCTTGCTTTAATCCCCACCAATCCCATCAAACCCTTCGACTTAAACACCCATAACAACAATCCCATTTCCTTGGTTTTTGATTCTATCAATCACAAAAAGCGTTCTCGTCATCTCGACTCCCCTGCGACATTTCGTCAAACACTTCCTCTGCTTCTTTGGAATGACCATCCCAATGATGGCGATGACGATGACCCTAATGACCCCCATTCTGCCTCCTCTAATGATTCAGACGAGGAGGAGGAAGAGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTTATGAAGGAAGGGGTTGGACGGAGAGCGGTGATCCGCCGTCCAGCGGTGAAGAACGACGGCGTGTTTTGGAGAGGATTGGATTTGAATAATTCTCGATACGTGAAAGTGAAGATGGAGGGAGTGGGAATTGCTAGGAAGGTTGATTTGAGGGAACATCATTCTTTTGATGCGCTTAGAGCTACTTTGATGAAGATGTTTGATGAAACGAATTCGGAGGGTTACAAACTCACTTTCCAGAATACCAAGGGTGAATGGTTACTTGCTGAGAACGTAACTTGGAGGAATTTCATCGGAACTGTTCAACGGATCAATCTGGAAAAGAAGTCCGGGTGATGAGTGATGAGTGATGAGGGTTTACCGGCGGTGGGTTGTCAGAGAATCGGATGCTGTCTAATTAAAATATATCTCTTATGTTTTTTTGTTTTAAAATAGCAG

Coding sequence (CDS)

ATGTGGGTAAGAGAAAAGGAACATGAGAGCAATTGGGTCGGCCAAAGGCAGAGCATTGATACGGACATCTTAGACGTTTTTCCGTTCTCTTTCCAACACTTTGTCCCCACCATCCTCATTCTTTGTCCCACACCCGCACGCACAACCCCTCTTCTCCTTTTAAACCCACATCCTCTTTCCAATTTCCATAATTCAAATTCATCTTTTGTTCTCACATTTTCTTCAATCAATCTCTTCCCCTACCTAATGGCTATGGAGCTTCAACTTGGTCTTGCTTTAATCCCCACCAATCCCATCAAACCCTTCGACTTAAACACCCATAACAACAATCCCATTTCCTTGGTTTTTGATTCTATCAATCACAAAAAGCGTTCTCGTCATCTCGACTCCCCTGCGACATTTCGTCAAACACTTCCTCTGCTTCTTTGGAATGACCATCCCAATGATGGCGATGACGATGACCCTAATGACCCCCATTCTGCCTCCTCTAATGATTCAGACGAGGAGGAGGAAGAGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTTATGAAGGAAGGGGTTGGACGGAGAGCGGTGATCCGCCGTCCAGCGGTGAAGAACGACGGCGTGTTTTGGAGAGGATTGGATTTGAATAATTCTCGATACGTGAAAGTGAAGATGGAGGGAGTGGGAATTGCTAGGAAGGTTGATTTGAGGGAACATCATTCTTTTGATGCGCTTAGAGCTACTTTGATGAAGATGTTTGATGAAACGAATTCGGAGGGTTACAAACTCACTTTCCAGAATACCAAGGGTGAATGGTTACTTGCTGAGAACGTAACTTGGAGGAATTTCATCGGAACTGTTCAACGGATCAATCTGGAAAAGAAGTCCGGGTGA

Protein sequence

MWVREKEHESNWVGQRQSIDTDILDVFPFSFQHFVPTILILCPTPARTTPLLLLNPHPLSNFHNSNSSFVLTFSSINLFPYLMAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG*

Homology

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BLAST of Cucsa.036190.1 vs. Swiss-Prot
Match: IAA29_ARATH (Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-17
Identity = 79/252 (31.35%), Postives = 113/252 (44.84%), Query Frame = 1


Query: 85  MELQLGLALIPTNPIK---PFDLNTHNNNPISLVFDSINHKKRSRHLDSPATF------- 144
           MEL LGL+L P    K    FDLN H         +       +  L   ATF       
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKH------CAIEGAASCLGTEKLRFEATFGLGNVEE 60

Query: 145 RQTLP---LLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFM 204
              +P   L   N  PN+ D+D    P  + S+   ++EEE + +VGWPP+K    +  +
Sbjct: 61  NCYMPKQRLFALNGQPNEEDED----PLESESSIVYDDEEENSEVVGWPPVK----TCMI 120

Query: 205 KEGV-----------------GRRAVIRRPAVKNDGVFWRG------LDLNNSRYVKVKM 264
           K G                  GRR       + N      G      +   +S YVKVKM
Sbjct: 121 KYGSYHHRHIRNHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKM 180

Query: 265 EGVGIARKVDLREHHSFDALRATLMKMFDE-----TNSEGYKLTFQNTKGEWLLAENVTW 296
           +GV IARKVD++  +S+++L  +L+ MF E          Y  TFQ  +G+WLL  +VTW
Sbjct: 181 DGVAIARKVDIKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTW 238

[Close]

BLAST of Cucsa.036190.1 vs. Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-12
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1


Query: 162 SSNDSDEEEEEENGLVGWPPLKKRR----------KSLFMKEGVGRRAVIRRPAVKNDGV 221
           SS+         + +VGWPP+   R          K+   +EG G + V++   +K D  
Sbjct: 56  SSSHQGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELK-DVS 115

Query: 222 FWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDE------------- 281
                 +    +VKV M+GVGI RKVD+R H S++ L  TL +MF               
Sbjct: 116 MKVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPL 175

Query: 282 ---TNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINL 296
                S  + LT+++ +G+W+L  +V WR FI +V+R+ +
Sbjct: 176 RLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRI 214

[Close]

BLAST of Cucsa.036190.1 vs. Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-11
Identity = 54/186 (29.03%), Postives = 82/186 (44.09%), Query Frame = 1


Query: 140 LLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRA 199
           LL   D P+ G     +    A S+      +    +VGWPP+   R +  +     + A
Sbjct: 45  LLTAKDFPSVGSKRAADSASHAGSSPPRSSSQ----VVGWPPIGSHRMNSLVNNQATKSA 104

Query: 200 VIRRPA----VKNDGVFWRGLDLNNS---RYVKVKMEGVGIARKVDLREHHSFDALRATL 259
                A    VK+D        +N      ++KV M+GV I RKVDL  H S++ L  TL
Sbjct: 105 REEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTL 164

Query: 260 MKMFDETN-------------------SEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRI 300
             MF  TN                   S  + LT+++ +G+W+L  +V WR FI +V+R+
Sbjct: 165 EDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRL 224

[Close]

BLAST of Cucsa.036190.1 vs. Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-11
Identity = 43/158 (27.22%), Postives = 78/158 (49.37%), Query Frame = 1


Query: 158 PHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI------RRPAVKNDGV 217
           P  A++ D+++    +   VGWPP++  R+++   + V  +         ++PA    G 
Sbjct: 69  PAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGS 128

Query: 218 FWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMF----------DETNS 277
                  N+S +VKV M+G    RKVDL+ ++S+  L   L KMF          +E N 
Sbjct: 129 -------NSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNG 188

Query: 278 EGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKS 300
                T+++  G+W+L  +V W+ F+ + +R+ + K S
Sbjct: 189 SDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGS 219

[Close]

BLAST of Cucsa.036190.1 vs. Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-11
Identity = 43/158 (27.22%), Postives = 78/158 (49.37%), Query Frame = 1


Query: 158 PHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI------RRPAVKNDGV 217
           P  A++ D+++    +   VGWPP++  R+++   + V  +         ++PA    G 
Sbjct: 69  PAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGS 128

Query: 218 FWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMF----------DETNS 277
                  N+S +VKV M+G    RKVDL+ ++S+  L   L KMF          +E N 
Sbjct: 129 -------NSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNG 188

Query: 278 EGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKS 300
                T+++  G+W+L  +V W+ F+ + +R+ + K S
Sbjct: 189 SDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGS 219

[Close]

BLAST of Cucsa.036190.1 vs. TrEMBL
Match: A0A0A0LWC5_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_1G231530 PE=3 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 2.1e-175
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1


Query: 1   MWVREKEHESNWVGQRQSIDTDILDVFPFSFQHFVPTILILCPTPARTTPLLLLNPHPLS 60
           MWVREKEHESNWVGQRQSIDTDILDVFPFSFQHFVPTILILCPTPARTTPLLLLNPHPLS
Sbjct: 1   MWVREKEHESNWVGQRQSIDTDILDVFPFSFQHFVPTILILCPTPARTTPLLLLNPHPLS 60

Query: 61  NFHNSNSSFVLTFSSINLFPYLMAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSIN 120
           NFHNSNSSFVLTFSSINLFPYLMAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSIN
Sbjct: 61  NFHNSNSSFVLTFSSINLFPYLMAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSIN 120

Query: 121 HKKRSRHLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWP 180
           HKKRSRHLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWP
Sbjct: 121 HKKRSRHLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWP 180

Query: 181 PLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLR 240
           PLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLR
Sbjct: 181 PLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLR 240

Query: 241 EHHSFDALRATLMKMFDETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 300
           EHHSFDALRATLMKMFDETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG
Sbjct: 241 EHHSFDALRATLMKMFDETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 300

[Close]

BLAST of Cucsa.036190.1 vs. TrEMBL
Match: M5VWY4_PRUPE (Auxin-responsive protein OS=Prunus persica GN=PRUPE_ppa010871mg PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-36
Identity = 106/237 (44.73%), Postives = 137/237 (57.81%), Query Frame = 1


Query: 85  MELQLGLALIPTNPIKPFDLNT--HNNNPISLVFDSINHKKRSRHLD------------S 144
           MELQLGLAL P+NPIK FDLN   +    ++ V   I++  + R  D            S
Sbjct: 1   MELQLGLAL-PSNPIKGFDLNNFGYEAKEVAAVSKHIHYDNKKRSFDQAFDEHNNNTSRS 60

Query: 145 PATFRQTLPLLLWNDH-PNDGD-DDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKS 204
            A   +TLPL LWN++ PN  D DDDP+     +S  +   + + +GLVGWPP+K  RK 
Sbjct: 61  TAAVPRTLPLFLWNNNQPNHHDKDDDPDKHQDNNSRFTIVIKNDGDGLVGWPPIKSWRKE 120

Query: 205 LFM---KEGVGRRAVIRRPAVKNDGVFWRGL-DLNNSRYVKVKMEGVGIARKVDLREHHS 264
                   G G R V         G   RG  + ++S +VKVKMEGVGIARK+DL  HHS
Sbjct: 121 ACFHNHNHGHGHRTV-----GNGSGGGGRGSSNHHHSTFVKVKMEGVGIARKIDLSLHHS 180

Query: 265 FDALRATLMKMFD--ETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKS 300
           F  L  TLM MFD  + +S  YKLT+Q+ +G+WLLA +V WR FI +VQR+ L KKS
Sbjct: 181 FRTLADTLMDMFDKCQMDSNNYKLTYQDREGDWLLARDVPWRTFIRSVQRLKLVKKS 231

[Close]

BLAST of Cucsa.036190.1 vs. TrEMBL
Match: B9IMW1_POPTR (Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0018s12790g PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 99/242 (40.91%), Postives = 138/242 (57.02%), Query Frame = 1


Query: 85  MELQLGLALIPTNPIKPFDLNTHNNN-------------PISLVFDSINHKKRS------ 144
           MELQLGL L     +K  DLN++ +                S    + N KKRS      
Sbjct: 1   MELQLGLGLPSEKTMKGLDLNSYVSEPKGLLGSGQLQLGQYSWFSTNANDKKRSFIDAFE 60

Query: 145 ---RHLDSPATFRQTLPLLLWNDHPNDGDDDDPN-DPHSASSNDSDEEEEEENGLVGWPP 204
               + D P    QTLPLL+WN+ PND DD   + D HS++S  S++ + E + +VGWPP
Sbjct: 61  ESSGNEDGP----QTLPLLVWNNQPNDEDDFPKDLDNHSSNSCASNKSDGESDWIVGWPP 120

Query: 205 LKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRY--VKVKMEGVGIARKVDL 264
           +K ++K L  +     RA+    AV N    +       S+Y  +KVKMEGVGIARK+D+
Sbjct: 121 IKFKKKKLSRQSS---RALEINRAVDNG---YEDCQARTSKYMYIKVKMEGVGIARKIDV 180

Query: 265 REHHSFDALRATLMKMFD--ETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEK 300
             HHSF  L+ TL+ MF   + NS  Y+LT+Q+ +G+WLLAE+V WRNF+GTVQ + L +
Sbjct: 181 SLHHSFPTLKQTLLDMFGICQENSSNYRLTYQDREGDWLLAEDVPWRNFLGTVQLLKLMR 232

[Close]

BLAST of Cucsa.036190.1 vs. TrEMBL
Match: W9SZ29_9ROSA (Auxin-responsive protein OS=Morus notabilis GN=L484_008968 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 98/237 (41.35%), Postives = 131/237 (55.27%), Query Frame = 1


Query: 85  MELQLGLALIPTNP----IKPFDLNTHNNNPISLVFDSINHKKRSR-------------- 144
           MELQLGLAL+P+N     ++ FDLN       S     I   K+ R              
Sbjct: 1   MELQLGLALLPSNSSLDHVQGFDLNKEGLIIGSNHHHEIRSNKKPRFCQAFLENNDDDDD 60

Query: 145 ---HLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLK 204
              H DS     +TLPLL WN+ PN+GD+D   D H  S+  S  + E E+G+VGWPP+K
Sbjct: 61  DHHHQDS---LPKTLPLLCWNNQPNEGDNDPYRDLHKYSTF-SLSKNEGEDGVVGWPPIK 120

Query: 205 KRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHH 264
            RRK L     VG R+ I R           G+ ++   YVKVKMEG+ IARK+DL  H 
Sbjct: 121 SRRKRLCCN--VGDRSEINRTVENGCSC---GMRVSKFMYVKVKMEGMAIARKIDLSLHS 180

Query: 265 SFDALRATLMKMFD--ETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKK 299
            F  L  TLM MF   + +S  +KLT+Q+ +G+WLLA++V WR FI +VQR+ L ++
Sbjct: 181 CFGTLTDTLMDMFGKCQEDSGNHKLTYQDREGDWLLAQDVPWRTFIRSVQRLKLLRR 228

[Close]

BLAST of Cucsa.036190.1 vs. TrEMBL
Match: A0A061GMP6_THECC (Auxin-responsive protein OS=Theobroma cacao GN=TCM_038129 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 99/254 (38.98%), Postives = 135/254 (53.15%), Query Frame = 1


Query: 83  MAMELQLGLAL--IPTNPIKPFDLNTH--------------------------NNNPISL 142
           M MELQLGLAL   P  PIK FDLN++                          N N  S 
Sbjct: 1   MCMELQLGLALPSTPPIPIKMFDLNSYGYEPREALGSNILSWPLLKLGPCDINNINSSSS 60

Query: 143 VFDSINHKKRSRHLDSPATFRQ------TLPLLLWNDHPNDGDDDDPNDPHSASSNDSDE 202
              S +   R R  D    F +      TLPLLLW++ PND  +DDP D    SS+   +
Sbjct: 61  SSSSSSGGSRKRGFDEVVLFDENRAVPKTLPLLLWSNQPND--EDDPKDLEDNSSSAIFK 120

Query: 203 EEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKM 262
            + E  GLVGWPP+K  RK    +   G     R  A  ++G    G+  +NS +VKVK+
Sbjct: 121 NDGE--GLVGWPPVKTWRKKQRRQIPDGGAQNNRVAAAADNGC---GVRASNSTFVKVKI 180

Query: 263 EGVGIARKVDLREHHSFDALRATLMKMF--DETNSEGYKLTFQNTKGEWLLAENVTWRNF 301
           EGV IARK+DL  HHSF+ L +TLM+MF   + N + ++LT+ + +G+WLLAE+V WR F
Sbjct: 181 EGVAIARKIDLSVHHSFETLTSTLMRMFGISDENWKCFRLTYLDREGDWLLAEDVPWRTF 240

[Close]

BLAST of Cucsa.036190.1 vs. TAIR10
Match: AT4G32280.1 (AT4G32280.1 indole-3-acetic acid inducible 29)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-19
Identity = 79/252 (31.35%), Postives = 113/252 (44.84%), Query Frame = 1


Query: 85  MELQLGLALIPTNPIK---PFDLNTHNNNPISLVFDSINHKKRSRHLDSPATF------- 144
           MEL LGL+L P    K    FDLN H         +       +  L   ATF       
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKH------CAIEGAASCLGTEKLRFEATFGLGNVEE 60

Query: 145 RQTLP---LLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFM 204
              +P   L   N  PN+ D+D    P  + S+   ++EEE + +VGWPP+K    +  +
Sbjct: 61  NCYMPKQRLFALNGQPNEEDED----PLESESSIVYDDEEENSEVVGWPPVK----TCMI 120

Query: 205 KEGV-----------------GRRAVIRRPAVKNDGVFWRG------LDLNNSRYVKVKM 264
           K G                  GRR       + N      G      +   +S YVKVKM
Sbjct: 121 KYGSYHHRHIRNHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKM 180

Query: 265 EGVGIARKVDLREHHSFDALRATLMKMFDE-----TNSEGYKLTFQNTKGEWLLAENVTW 296
           +GV IARKVD++  +S+++L  +L+ MF E          Y  TFQ  +G+WLL  +VTW
Sbjct: 181 DGVAIARKVDIKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTW 238

[Close]

BLAST of Cucsa.036190.1 vs. TAIR10
Match: AT1G04550.2 (AT1G04550.2 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 75.1 bits (183), Expect = 8.3e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1


Query: 162 SSNDSDEEEEEENGLVGWPPLKKRR----------KSLFMKEGVGRRAVIRRPAVKNDGV 221
           SS+         + +VGWPP+   R          K+   +EG G + V++   +K D  
Sbjct: 56  SSSHQGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELK-DVS 115

Query: 222 FWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDE------------- 281
                 +    +VKV M+GVGI RKVD+R H S++ L  TL +MF               
Sbjct: 116 MKVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPL 175

Query: 282 ---TNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINL 296
                S  + LT+++ +G+W+L  +V WR FI +V+R+ +
Sbjct: 176 RLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRI 214

[Close]

BLAST of Cucsa.036190.1 vs. TAIR10
Match: AT2G33310.2 (AT2G33310.2 auxin-induced protein 13)

HSP 1 Score: 71.6 bits (174), Expect = 9.1e-13
Identity = 54/186 (29.03%), Postives = 82/186 (44.09%), Query Frame = 1


Query: 140 LLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRA 199
           LL   D P+ G     +    A S+      +    +VGWPP+   R +  +     + A
Sbjct: 45  LLTAKDFPSVGSKRAADSASHAGSSPPRSSSQ----VVGWPPIGSHRMNSLVNNQATKSA 104

Query: 200 VIRRPA----VKNDGVFWRGLDLNNS---RYVKVKMEGVGIARKVDLREHHSFDALRATL 259
                A    VK+D        +N      ++KV M+GV I RKVDL  H S++ L  TL
Sbjct: 105 REEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTL 164

Query: 260 MKMFDETN-------------------SEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRI 300
             MF  TN                   S  + LT+++ +G+W+L  +V WR FI +V+R+
Sbjct: 165 EDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRL 224

[Close]

BLAST of Cucsa.036190.1 vs. TAIR10
Match: AT4G28640.2 (AT4G28640.2 indole-3-acetic acid inducible 11)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-12
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 1


Query: 176 LVGWPPLKKRRKSLFMKEGVGRRAV-----IRRPAVKNDGVFWRGLDLNNSRYVKVKMEG 235
           +VGWPP++  R +  + +            I +   KN         + NS +VKV M+G
Sbjct: 89  VVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRS---DSTKMRNSMFVKVTMDG 148

Query: 236 VGIARKVDLREHHSFDALRATLMKMFDE----------------------TNSEGYKLTF 295
           + I RK+DL  H  +++L  TL +MF +                        S G  LT+
Sbjct: 149 IPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTY 208

Query: 296 QNTKGEWLLAENVTWRNFIGTVQRINLEKKS 300
           ++ +G+W+L  +V W  FIG+V+R+ + K S
Sbjct: 209 EDKEGDWMLVGDVPWGMFIGSVRRLRIMKTS 236

[Close]

BLAST of Cucsa.036190.1 vs. TAIR10
Match: AT1G04100.1 (AT1G04100.1 indoleacetic acid-induced protein 10)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-11
Identity = 56/180 (31.11%), Postives = 82/180 (45.56%), Query Frame = 1


Query: 160 SASSNDSDEEEEEENGLVGWPPLKKRR--------KSLFMKEGVGR-------RAVIRRP 219
           SA S+ +          VGWPPL+  R        KSL  + G+         ++V+   
Sbjct: 78  SADSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVV--V 137

Query: 220 AVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDE------ 279
           A KND   +       S  VKV M+GV I RKVDL    S+ AL  TL  MF +      
Sbjct: 138 AAKNDDACFIKSS-RTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVT 197

Query: 280 -TNSEGYK------------------LTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKS 300
            +N++GYK                  +T+Q+  G+W+L  +V W+ F+G+V R+ + K S
Sbjct: 198 RSNTQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTS 254

[Close]

BLAST of Cucsa.036190.1 vs. NCBI nr
Match: gi|700210036|gb|KGN65132.1| (hypothetical protein Csa_1G231530 [Cucumis sativus])

HSP 1 Score: 622.9 bits (1605), Expect = 3.0e-175
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1


Query: 1   MWVREKEHESNWVGQRQSIDTDILDVFPFSFQHFVPTILILCPTPARTTPLLLLNPHPLS 60
           MWVREKEHESNWVGQRQSIDTDILDVFPFSFQHFVPTILILCPTPARTTPLLLLNPHPLS
Sbjct: 1   MWVREKEHESNWVGQRQSIDTDILDVFPFSFQHFVPTILILCPTPARTTPLLLLNPHPLS 60

Query: 61  NFHNSNSSFVLTFSSINLFPYLMAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSIN 120
           NFHNSNSSFVLTFSSINLFPYLMAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSIN
Sbjct: 61  NFHNSNSSFVLTFSSINLFPYLMAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSIN 120

Query: 121 HKKRSRHLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWP 180
           HKKRSRHLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWP
Sbjct: 121 HKKRSRHLDSPATFRQTLPLLLWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWP 180

Query: 181 PLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLR 240
           PLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLR
Sbjct: 181 PLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLR 240

Query: 241 EHHSFDALRATLMKMFDETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 300
           EHHSFDALRATLMKMFDETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG
Sbjct: 241 EHHSFDALRATLMKMFDETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 300

[Close]

BLAST of Cucsa.036190.1 vs. NCBI nr
Match: gi|778660006|ref|XP_004150206.2| (PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus])

HSP 1 Score: 452.2 bits (1162), Expect = 7.0e-124
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1


Query: 83  MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLLL 142
           MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLLL
Sbjct: 1   MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLLL 60

Query: 143 WNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVIR 202
           WNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVIR
Sbjct: 61  WNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVIR 120

Query: 203 RPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETNSE 262
           RPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETNSE
Sbjct: 121 RPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETNSE 180

Query: 263 GYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 301
           GYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG
Sbjct: 181 GYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 218

[Close]

BLAST of Cucsa.036190.1 vs. NCBI nr
Match: gi|659086500|ref|XP_008443966.1| (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo])

HSP 1 Score: 413.3 bits (1061), Expect = 3.6e-112
Identity = 206/220 (93.64%), Postives = 207/220 (94.09%), Query Frame = 1


Query: 83  MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSPATF-RQTLPLL 142
           MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDS  TF R TLPLL
Sbjct: 1   MAMELQLGLALIPTNPIKPFDLNTHNNNPISLVFDSINHKKRSRHLDSSPTFPRTTLPLL 60

Query: 143 LWNDHPNDGDDDDPNDPHSASSNDSDEEEEE-ENGLVGWPPLKKRRKSLFMKEGVGRRAV 202
           LWNDHPNDGD DD NDP SASSNDSDEEEEE ENGLVGWPPLKKRRKSLFMKEGVGRRAV
Sbjct: 61  LWNDHPNDGDGDDSNDPLSASSNDSDEEEEERENGLVGWPPLKKRRKSLFMKEGVGRRAV 120

Query: 203 IRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETN 262
           IRRPAVKNDG FWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLM MFDETN
Sbjct: 121 IRRPAVKNDGGFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMNMFDETN 180

Query: 263 SEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 301
           SEGY+LTFQNT GEWLLAENVTWRNFIG VQRI LEKKSG
Sbjct: 181 SEGYRLTFQNTNGEWLLAENVTWRNFIGDVQRIKLEKKSG 220

[Close]

BLAST of Cucsa.036190.1 vs. NCBI nr
Match: gi|743806028|ref|XP_011017813.1| (PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica])

HSP 1 Score: 162.9 bits (411), Expect = 8.5e-37
Identity = 103/241 (42.74%), Postives = 141/241 (58.51%), Query Frame = 1


Query: 85  MELQLGLALIPTNPIKPFDLNTHNNNPISLVFDS--------------INHKKRS----- 144
           MELQLGL L     +K  DLN++ + P  L   S              +N KKRS     
Sbjct: 1   MELQLGLGLPSEKTMKGLDLNSYVSEPKGLQLGSGQLQLGQCSWFSTNVNDKKRSFIDAF 60

Query: 145 ----RHLDSPATFRQTLPLLLWNDHPNDGDDDDPN-DPHSASSNDSDEEEEEENGLVGWP 204
                + D P    QTLPLL+WN+ PND DD   + D HS++S  S++ + E +G+VGWP
Sbjct: 61  EESSGNEDGP----QTLPLLVWNNQPNDEDDFPKDLDNHSSNSCASNKSDGESDGIVGWP 120

Query: 205 PLKKRRKSLFMKEGVGRRAVIRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLR 264
           P+K +RK L  ++  G   + R  AV N G        +   Y+KV MEGVGIARK+D+ 
Sbjct: 121 PIKFKRKKL-SRQSSGALEINR--AVDN-GCEDCQARTSKYMYIKVNMEGVGIARKIDVS 180

Query: 265 EHHSFDALRATLMKMFD--ETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKK 300
            HHSF AL+ TL+ MF   + NS  Y+LT+Q+ +G+WLLAE+V WRNF+GTV R+ L ++
Sbjct: 181 LHHSFPALKQTLLDMFGICQENSSSYRLTYQDREGDWLLAEDVPWRNFLGTVHRLKLMRR 233

[Close]

BLAST of Cucsa.036190.1 vs. NCBI nr
Match: gi|595820899|ref|XP_007204725.1| (hypothetical protein PRUPE_ppa010871mg [Prunus persica])

HSP 1 Score: 160.2 bits (404), Expect = 5.5e-36
Identity = 106/237 (44.73%), Postives = 137/237 (57.81%), Query Frame = 1


Query: 85  MELQLGLALIPTNPIKPFDLNT--HNNNPISLVFDSINHKKRSRHLD------------S 144
           MELQLGLAL P+NPIK FDLN   +    ++ V   I++  + R  D            S
Sbjct: 1   MELQLGLAL-PSNPIKGFDLNNFGYEAKEVAAVSKHIHYDNKKRSFDQAFDEHNNNTSRS 60

Query: 145 PATFRQTLPLLLWNDH-PNDGD-DDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKS 204
            A   +TLPL LWN++ PN  D DDDP+     +S  +   + + +GLVGWPP+K  RK 
Sbjct: 61  TAAVPRTLPLFLWNNNQPNHHDKDDDPDKHQDNNSRFTIVIKNDGDGLVGWPPIKSWRKE 120

Query: 205 LFM---KEGVGRRAVIRRPAVKNDGVFWRGL-DLNNSRYVKVKMEGVGIARKVDLREHHS 264
                   G G R V         G   RG  + ++S +VKVKMEGVGIARK+DL  HHS
Sbjct: 121 ACFHNHNHGHGHRTV-----GNGSGGGGRGSSNHHHSTFVKVKMEGVGIARKIDLSLHHS 180

Query: 265 FDALRATLMKMFD--ETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKS 300
           F  L  TLM MFD  + +S  YKLT+Q+ +G+WLLA +V WR FI +VQR+ L KKS
Sbjct: 181 FRTLADTLMDMFDKCQMDSNNYKLTYQDREGDWLLARDVPWRTFIRSVQRLKLVKKS 231

The following BLAST results are available for this feature:

BLAST of Cucsa.036190.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAA29_ARATH	1.5e-17	31.35	Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2	[more]
IAA12_ARATH	1.5e-12	30.00	Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1	[more]
IAA13_ARATH	1.6e-11	29.03	Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2	[more]
IAA13_ORYSI	2.1e-11	27.22	Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1	[more]
IAA13_ORYSJ	2.1e-11	27.22	Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=...	[more]

BLAST of Cucsa.036190.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWC5_CUCSA	2.1e-175	100.00	Auxin-responsive protein OS=Cucumis sativus GN=Csa_1G231530 PE=3 SV=1	[more]
M5VWY4_PRUPE	3.9e-36	44.73	Auxin-responsive protein OS=Prunus persica GN=PRUPE_ppa010871mg PE=3 SV=1	[more]
B9IMW1_POPTR	2.1e-34	40.91	Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0018s12790g PE=3 SV=1	[more]
W9SZ29_9ROSA	1.5e-32	41.35	Auxin-responsive protein OS=Morus notabilis GN=L484_008968 PE=3 SV=1	[more]
A0A061GMP6_THECC	1.9e-30	38.98	Auxin-responsive protein OS=Theobroma cacao GN=TCM_038129 PE=3 SV=1	[more]

BLAST of Cucsa.036190.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32280.1	8.5e-19	31.35	indole-3-acetic acid inducible 29	[more]
AT1G04550.2	8.3e-14	30.00	AUX/IAA transcriptional regulator family protein	[more]
AT2G33310.2	9.1e-13	29.03	auxin-induced protein 13	[more]
AT4G28640.2	7.7e-12	28.48	indole-3-acetic acid inducible 11	[more]
AT1G04100.1	2.9e-11	31.11	indoleacetic acid-induced protein 10	[more]

BLAST of Cucsa.036190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210036\|gb\|KGN65132.1\|	3.0e-175	100.00	hypothetical protein Csa_1G231530 [Cucumis sativus]	[more]
gi\|778660006\|ref\|XP_004150206.2\|	7.0e-124	100.00	PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus]	[more]
gi\|659086500\|ref\|XP_008443966.1\|	3.6e-112	93.64	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]	[more]
gi\|743806028\|ref\|XP_011017813.1\|	8.5e-37	42.74	PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]	[more]
gi\|595820899\|ref\|XP_007204725.1\|	5.5e-36	44.73	hypothetical protein PRUPE_ppa010871mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.036190	Cucsa.036190	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.036190.1	Cucsa.036190.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.036190.1.CDS.1	Cucsa.036190.1.CDS.1	CDS
Cucsa.036190.1.CDS.2	Cucsa.036190.1.CDS.2	CDS
Cucsa.036190.1.CDS.3	Cucsa.036190.1.CDS.3	CDS
Cucsa.036190.1.CDS.4	Cucsa.036190.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.036190.1.three_prime_UTR.1	Cucsa.036190.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 221..298 score: 17
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 46..299 score: 1.3
None	No IPR available	PANTHER	PTHR31734:SF38	SUBFAMILY NOT NAMED	coord: 46..299 score: 1.3
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 216..296 score: 7.1