Cucsa.019250.3 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.019250.3
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Coiled-coil domain-containing protein 94
Location	scaffold00276 : 41088 .. 46407 (-)
Sequence length	1720

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCGTATTCTCTTTATACCTTCATTTCATCTAACCTACTTTCTCAAGAAAACACTCCTCCTCTCGCAAAAAAGACCGTCCGCGTGCGCCTCCTTTCTAACGAAGAAGATCGCCGTCGTCACAGTCTCGTCGTCCGCTCTGTCCGCCGTCACACCCTGCTAGTTCGCCGCACAATTTGCTCGGCACCCGCTGTCAGATTCAAGCATCTCTTTCTCTCTGCTACTCAGAGGTAAAATTTTTCAGTTCATTTGATTCATTATAATTGTTGCCTGGTTGTGGTTGCATTTTACATTATCGAAAGAACCAAAATCCTTCAAGGTAAAATTTCATCTTATTGATTATGAAAGATTTCTGTAAGGTATTTTTGTAATTACTTCTATAGGTACCTTATATGGTTGTGGAAGTGTTAATCAAATAGTTTTCAACTGTGTGATGAGACGGTGGAAAGCACTTGTGGGTTTTGAGAAGAAATCTAGGATGAGTTGTGAGGCTGAAAAGTTTAATATATAAATAATCATGTCGTTATATTTCTGAACAAGGATGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAGAAGTTCCTTGAAAACTTGTATTTAGTAAGCATCTTAGATTTTAGGATTAAAGTACTGATGTAGATATGGATATCAAAATTTCAATTTTACTGTTATTTAAAAGTCACTTTTTAGGTTGATTTTGAGTTTGAAAGTCACCGATTGTTGTTGAAATTGTATTTACTAAGCATCTTAGGTTGTTTTGAGTTTGAAAAACTTTTTAGGATGGAGATACATATCATGTTTGTGTGTTTGTTATTTCTTGATAGGGGGAATTTGTGAGTTTGTTATTCCTTAATAGGGGGCATTTGTTGTCATAAAATATAAATCACTATGCTTTAGCTATATGATGATTTTTTAAATTCATTTTGCTCTTGATTGTTGTTGAATTAATTAGGTTTTTTCATTTATAAAATTCATTATTTGAATAATGTCTTAAGTGCATTACTTCAAATTATGGCATATAAATCTCCATGGCTTTTGTGATGTGCTAGGTACTGAGAGATACACCCTTCTCCTTTCCCTTTCAAGTGAGATAAAATGGGAGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTTAATTCTCGCAAGGAGGACGTCATTGGTGAGGCAAGAGAATCCCTTTTATATTTTTAACTTAAAATATGTTTGTTCCTTTTGCAATTTATTTTCTTATTTCTCATATATTTTTTTCCTTTTACTTCAGACATATTTGGGAATTCAAATTTTTAGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTATGTTGTAGAATCAGGAGCCACACGTAATTTTGAACCATGGCGTGAGGAGGATGAAGCTTCTGAGAAGGAGAAACACAAAAGGAATGCGGAAGAGATGGGGGACGCAATGAAATCCTTGGAGAATAGAACCTTGGATTCGAAACGAGAGATGGACATTCTTGCTGCTTTGGATGAGATGAAGTCTATGAAGGTTTTTGTTTTATTACCCTTTGTTTCATCATTAAGATTCTTGGGTTGTGATTACTTTCTTGGAGTTGTGGCTTTGAACAAGATTTTAATTTGTTTCTTGATTTTAACATCTTCAATTATTAAGTATAGTTTATTGTTTAAAATAACTTGGTGGGTGTTTGTTCCGCAGTCGAGACACGCAACTGTGAGTATTGATTCAATGCTTGTAGCTTTGCAACGAACTGCCGCTGAAAAGGTACGTGTAGCACTGCCTTCATGAAAACAGTTTGACATGAAATGTATGTGATAAAATATTGAAAACAGAAGCCTGGATTCTGTCTTTTAATTTCGAGCATCATTTTAAATATTTTGAGATATTGAGCAATATACACTTTGCAGGAAAAGAAGTTAGAAGAAGAAGATGAAGCACTGATAAAATCAATAGTCTTCAATGTGAGGCCATTTTTCCTATATGTTTTTCCTCTTCCATTGAAACCATTTACAGTTGTTTCTTTTTGTTTCCTTGGAATTAAAAATTTTCATATGCTTTTGTCAATACTCTTGTGCAGAACTCAAACAGTTATGTTAGAAGAATTTCAGATGATGAATTTGATGATGGTAGTATTGTTCAACATTTGACCAACAATGATATAGCATCGGACTTTAAAGCTAAGGTAATTAAGTAATAAATGAAGTTATTTTCTATTCCTTATATGAAGATTTGGATGAATAGTGAGCATTAGAGGTGTGAGTGATACATTTGTAAACCGGATAGGGTCTTTGAGAATCTCATCTATTTAGCTTATTCTTAACTTCTTGACATGTTAACTATTTCTGCAGAATTTTATCAAAGGTAAATCTGGTGATTAGGATGAATTTTCAGGATTATCAAAAGTAACTTAAATATGCATAAAGATACTATTTGTGCCAACTAAATGTCATTGGAGCACTCAAACATGCATATGCCTTCTAAAAAAAATGCATTTTCCTTTTCTCATTGGCATTTCTATCTAATTGTGAATCTTTAAGTGAAGCATACAACAAAATTGCTACGTGTTTTTTTTTTTTTTGCTAGCATGAACTACATTTGAGTGTGTATCTTAATTTGCGGAGGATAAGAACTAAGAAGTGGGGTATGTTTGAGACTTGTTCCTGTTATTGAATTTTGAAGTCTTTGCATAGAAGATTGCTAATTAGACCTATTTGTAGCATTCAAATTTGAATGTGCCTTTTCTCATTAGCATTTCAATCTATTTGGATTGCAGAAGCAGAGGGTTTCTGAAGGATCTCCTCATGATCCTACAAGTACTTCATCAAAAGCTGGTTTTCTCCATAGCCGCATGGGTGAAGGTACCCTACCTTATATTTTTATTCTATCTACTTTTCCAAGGAATATATTTGGAAAATGGTGTGAATGTTACAAATATATACTAATCTTTAATTGATTGGCCCCTTCTCTCAATATTGCAAGAAAAAGTTTTTGGTAGATGCTAGTGCTGGGTATAAAAAAAAACTTCTCTATTATTTTCTCTCTTCATGAAAAGGTTACAGTTGATAGGAAGGCCCTTTCAATTCAAAAGAGGGGAAATGGTAAAATAATAGTTATTAAGGAACCTTTCAACAATTGTGAACGAATGGAAAGCGTTCTTATAGTTCTTTTGGGAGGGAATTCTCTCTACCTCTCTAAGGAACCTTTCAACAATTGTGAACGAATGGAAAGCGTCCTTATAGTTCTTTTGGGAGGGGATTCTCTCTACCTCTCTTACCCCAACCCCTAGGCTGTTTGTTCTCTCCTTTTTTTGATCCTTTCACGTTTCTTATAAAAAAGATTGTTGCTGAGGAATGAGGGGTTCATGGGGAGGAAAATCAAGATGATTTTGGTTTGCAGGTGTGGAATTTCAAGCTGGTAGCACTTAGTTTAAGGTAGGAAATTAGAGTTTACAAGGAATTGGGTTACGGTCTCAGATGTGTCTTTTTTCTTCAAAACAAGTCAGTTTATATCTGTGCTTTTCTTTCTTAAAACAATTTGGGATCCCATCTTGAAGGGAAGGTGAAACAAAGACATATGGAGAAACTCTTGAAAGGCATAAAAAAGATTCACCTTTTATCTTCTCCTTTTGTTTTGTGTGCTGTGGAGATGGGAAGGAAACAGTTTTCGGGAGGATAAGTGGATTAGGGATAGCCCTCTTTACTGCTCTCTTTTTCCAT

mRNA sequence

AACCGTATTCTCTTTATACCTTCATTTCATCTAACCTACTTTCTCAAGAAAACACTCCTCCTCTCGCAAAAAAGACCGTCCGCGTGCGCCTCCTTTCTAACGAAGAAGATCGCCGTCGTCACAGTCTCGTCGTCCGCTCTGTCCGCCGTCACACCCTGCTAGTTCGCCGCACAATTTGCTCGGCACCCGCTGTCAGATTCAAGCATCTCTTTCTCTCTGCTACTCAGAGGTACTGAGAGATACACCCTTCTCCTTTCCCTTTCAAGTGAGATAAAATGGGAGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTTAATTCTCGCAAGGAGGACGTCATTGACATATTTGGGAATTCAAATTTTTAGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGACTATGTTGTAGAATCAGGAGCCACACGTAATTTTGAACCATGGCGTGAGGAGGATGAAGCTTCTGAGAAGGAGAAACACAAAAGGAATGCGGAAGAGATGGGGGACGCAATGAAATCCTTGGAGAATAGAACCTTGGATTCGAAACGAGAGATGGACATTCTTGCTGCTTTGGATGAGATGAAGTCTATGAAGTCGAGACACGCAACTGTGAGTATTGATTCAATGCTTGTAGCTTTGCAACGAACTGCCGCTGAAAAGGAAAAGAAGTTAGAAGAAGAAGATGAAGCACTGATAAAATCAATAGTCTTCAATAACTCAAACAGTTATGTTAGAAGAATTTCAGATGATGAATTTGATGATGGTAGTATTGTTCAACATTTGACCAACAATGATATAGCATCGGACTTTAAAGCTAAGAAGCAGAGGGTTTCTGAAGGATCTCCTCATGATCCTACAAGTACTTCATCAAAAGCTGGTTTTCTCCATAGCCGCATGGGTGAAGTTGATAGGAAGGCCCTTTCAATTCAAAAGAGGGGAAATGGTAAAATAATAGTTATTAAGGAACCTTTCAACAATTGTGAACGAATGGAAAGCGTTCTTATAGTTCTTTTGGGAGGGAATTCTCTCTACCTCTCTAAGGaacctttcaacaattgtgaacgaatggaaagcgtccttatagttcttttgggaggggattctctctacctctcttaccccaacccctaggctgtttgttctctcctttttttgatcctttcacgtttcttataaaaaaGATTGTTGCTGAGGAATGAGGGGTTCATGGGGAGGAAAATCAAGATGATTTTGGTTTGCAGGTGTGGAATTTCAAGCTGGTAGCACTTAGTTTAAGGTAGGAAATTAGAGTTTACAAGGAATTGGGTTACGGTCTCAGATGTGTCTTTTTTCTTCAAAACAAGTCAGTTTATATCTGTGCTTTTCTTTCTTAAAACAATTTGGGATCCCATCTTGAAGGGAAGGTGAAACaaagacatatggagaaactcttgaaaggcataaaaaagattcaccttttatcttctccttttgttttgtgtgctgtggagatgggaaggaaacagttttcgggaggataagtggattagggatagccctctttactgctctctttttccat

Coding sequence (CDS)

ATGGGGGACGCAATGAAATCCTTGGAGAATAGAACCTTGGATTCGAAACGAGAGATGGACATTCTTGCTGCTTTGGATGAGATGAAGTCTATGAAGTCGAGACACGCAACTGTGAGTATTGATTCAATGCTTGTAGCTTTGCAACGAACTGCCGCTGAAAAGGAAAAGAAGTTAGAAGAAGAAGATGAAGCACTGATAAAATCAATAGTCTTCAATAACTCAAACAGTTATGTTAGAAGAATTTCAGATGATGAATTTGATGATGGTAGTATTGTTCAACATTTGACCAACAATGATATAGCATCGGACTTTAAAGCTAAGAAGCAGAGGGTTTCTGAAGGATCTCCTCATGATCCTACAAGTACTTCATCAAAAGCTGGTTTTCTCCATAGCCGCATGGGTGAAGTTGATAGGAAGGCCCTTTCAATTCAAAAGAGGGGAAATGGTAAAATAATAGTTATTAAGGAACCTTTCAACAATTGTGAACGAATGGAAAGCGTTCTTATAGTTCTTTTGGGAGGGAATTCTCTCTACCTCTCTAAGGAACCTTTCAACAATTGTGAACGAATGGAAAGCGTCCTTATAGTTCTTTTGGGAGGGGATTCTCTCTACCTCTCTTACCCCAACCCCTAG

Protein sequence

MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEEEDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPTSTSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEPFNNCERMESVLIVLLGGNSLYLSKEPFNNCERMESVLIVLLGGDSLYLSYPNP*

Homology

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BLAST of Cucsa.019250.3 vs. Swiss-Prot
Match: CCD94_DICDI (Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-11
Identity = 39/105 (37.14%), Postives = 67/105 (63.81%), Query Frame = 1


Query: 3   DAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEEED 62
           DAM +LENRTL+SKREM++L AL+E+KS+ SR++ +  + +L    +    +EK  +EED
Sbjct: 131 DAMIALENRTLESKREMEMLDALEEIKSLNSRNSEIDTEQLLEYNLQKQELEEKLQDEED 190

Query: 63  EALIKSIVFNNSNSYVRRISDDEFDDGSI----VQHLTNNDIASD 104
           + L+KSI  N +   + +I+D+   + +I    ++ + N+D   D
Sbjct: 191 DLLVKSIFNNKNKLELNQINDNNSINNNIDSNKIKRIENDDDDGD 235

[Close]

BLAST of Cucsa.019250.3 vs. Swiss-Prot
Match: CWF16_SCHPO (Pre-mRNA-splicing factor cwf16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf16 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-06
Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 3   DAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTA--------AEK 62
           D M+ LE +TLD+KR+M I  ALDE++   +R + V+ID  +  L+  A        ++K
Sbjct: 138 DEMEKLEQKTLDTKRQMQISDALDELREKSARRSRVNIDDAIALLKEDAYGSIEEEESKK 197

Query: 63  EKKLEEEDEALIKSIVFNNSNSYVRRIS 83
            K  EEE +   KS+  +     +RR++
Sbjct: 198 RKFEEEEIDREAKSLFSSQDGEIIRRLN 225

[Close]

BLAST of Cucsa.019250.3 vs. Swiss-Prot
Match: CCD94_HUMAN (Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-06
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           + + MK LENRT DSK EM++L  L E+K +  R A V  ++ML   + +  E+ ++ +E
Sbjct: 130 LNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEEERRRQQQE 189

Query: 61  EDE 64
           EDE
Sbjct: 190 EDE 192

[Close]

BLAST of Cucsa.019250.3 vs. Swiss-Prot
Match: CCD94_MOUSE (Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-06
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           + + MK LENRT DSK EM++L  L E+K +  R A V  ++ML   + +  + +++ EE
Sbjct: 130 LNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRMSQEQWQQQQEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDD 89
           EDE    +++      + R + D E +D
Sbjct: 190 EDERETAALL--EEARHRRLLEDSESED 215

[Close]

BLAST of Cucsa.019250.3 vs. TrEMBL
Match: A0A0A0KL62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003615 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 1.3e-102
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 120
           EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT
Sbjct: 190 EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 249

Query: 121 STSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEPFNNCERMESVLIVLLGGNSLYLS 180
           STSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEPFNNCERMESVLIVLLGGNSLYLS
Sbjct: 250 STSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEPFNNCERMESVLIVLLGGNSLYLS 309

Query: 181 KEPFNNCERMESVLIV 197
           KEPFNNCERMESVLIV
Sbjct: 310 KEPFNNCERMESVLIV 325

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BLAST of Cucsa.019250.3 vs. TrEMBL
Match: V7BTJ2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G060900g PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 95/163 (58.28%), Postives = 113/163 (69.33%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVS+D ML ALQRTAA+KEK+LEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTAADKEKRLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 120
           EDEALIKS+VF+NS  +VRRI D++ +    +  L+N    S +  KKQ++SE  P  PT
Sbjct: 190 EDEALIKSVVFHNSEGFVRRIPDEDIESEEELDQLSNGHGESSYNPKKQKISEDHPSKPT 249

Query: 121 STSSKAGFLHSRMGEVDRKALSIQKRGNGK------IIVIKEP 158
            + +KA         +D       KR  GK      I VIK+P
Sbjct: 250 DSLTKA--------SLDDSGKQENKRNGGKLNPLVRISVIKKP 284

[Close]

BLAST of Cucsa.019250.3 vs. TrEMBL
Match: A0A151R6P8_CAJCA (Coiled-coil domain-containing protein 94 OS=Cajanus cajan GN=KK1_040604 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.6e-39
Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVS+D ML ALQRTAA+KEK+LEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTAADKEKRLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFD-DGSIVQHLTNNDIASDFKAKKQRVSEGSPHDP 120
           EDEAL+KS+VF+NS  YV+RISD++ + +  +VQ    +   S+F  K+Q++SE  P  P
Sbjct: 190 EDEALLKSVVFHNSEGYVKRISDEDIETEEQLVQLSNGHGETSNFNPKRQKISEDFPSKP 249

Query: 121 TSTSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEP 158
           T T +KA    S   E  R    +      +I VIK+P
Sbjct: 250 TDTLTKANLDDSGKQENSRSGGKLNSL--VRISVIKKP 285

[Close]

BLAST of Cucsa.019250.3 vs. TrEMBL
Match: A0A0S3STT0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G317800 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 82/126 (65.08%), Postives = 101/126 (80.16%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVS+D ML ALQRTAA+KEK+LEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTAADKEKRLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 120
           EDEA+IKS+VF+NS  YV+RI D++ +    +  L++    + +  KKQ++SE  P  PT
Sbjct: 190 EDEAMIKSVVFHNSGGYVKRIRDEDIEAEEQLDPLSHGHGETSYNMKKQKMSEDHPSKPT 249

Query: 121 STSSKA 127
            + +KA
Sbjct: 250 DSLTKA 255

[Close]

BLAST of Cucsa.019250.3 vs. TrEMBL
Match: A0A0L9TUN7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g045300 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 82/126 (65.08%), Postives = 101/126 (80.16%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVS+D ML ALQRTAA+KEK+LEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTAADKEKRLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 120
           EDEA+IKS+VF+NS  YV+RI D++ +    +  L++    + +  KKQ++SE  P  PT
Sbjct: 190 EDEAMIKSVVFHNSGGYVKRIRDEDIEAEEQLDPLSHGHGETSYNMKKQKMSEDHPSKPT 249

Query: 121 STSSKA 127
            + +KA
Sbjct: 250 DSLTKA 255

[Close]

BLAST of Cucsa.019250.3 vs. TAIR10
Match: AT1G17130.2 (AT1G17130.2 Family of unknown function (DUF572) )

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-33
Identity = 89/165 (53.94%), Postives = 112/165 (67.88%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDI+AALDEMKSMKSRHATVS+D+ML ALQRT AEK K++EE
Sbjct: 137 MGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQRTGAEKVKRIEE 196

Query: 61  EDEALIKSIVFNNSNSYVRRIS----DDEFDDGSIVQHLT---NNDIASDFKAKKQRVSE 120
           EDEA+IKSI F      +RRI+    DD++DD  I  + +       +S   +KK++ +E
Sbjct: 197 EDEAVIKSI-FGKQKEVIRRIADEEIDDDYDDDDIDDYPSLQKEKKGSSSDLSKKRKATE 256

Query: 121 GSPHDPTS--TSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKE 157
            SP +PT   TSS A        E  ++A+S Q   +  I VIK+
Sbjct: 257 VSPSNPTDILTSSSA----ENPKEPKKQAISKQPFKSVHIKVIKK 296

[Close]

BLAST of Cucsa.019250.3 vs. TAIR10
Match: AT2G32050.1 (AT2G32050.1 Family of unknown function (DUF572) )

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-18
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 2   GDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEEE 61
           GD M SLE RTL SKRE+D++AALDEMKSMKSR  +VS+DSML  L +   E+E+  +EE
Sbjct: 121 GDRMSSLEKRTLVSKREVDVMAALDEMKSMKSRRVSVSVDSMLEDLSKRHKEEEEVAKEE 180

Query: 62  DEALIKSIVFNNSNSYVRRISDDEFDD 89
           D ALIKS  F       RRI D+E D+
Sbjct: 181 DAALIKSTKFGKQ----RRIVDEETDE 203

[Close]

BLAST of Cucsa.019250.3 vs. TAIR10
Match: AT3G43250.1 (AT3G43250.1 Family of unknown function (DUF572) )

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 3   DAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEEED 62
           +A++SLENRT+ SKRE++++A+LDE+KSMKSR A++S+D ML  L R   ++E+ +EE  
Sbjct: 124 NALESLENRTVVSKREIEVMASLDELKSMKSRRASLSVDYMLEDLSRRKKQEEENVEE-- 183

Query: 63  EALIKSIVFNNSNSYVRRISDDE 86
           E LIKSI F       +RI  DE
Sbjct: 184 ELLIKSIKFG------KRIRTDE 198

[Close]

BLAST of Cucsa.019250.3 vs. NCBI nr
Match: gi|700194392|gb|KGN49569.1| (hypothetical protein Csa_5G003615 [Cucumis sativus])

HSP 1 Score: 380.6 bits (976), Expect = 1.8e-102
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 120
           EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT
Sbjct: 190 EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 249

Query: 121 STSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEPFNNCERMESVLIVLLGGNSLYLS 180
           STSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEPFNNCERMESVLIVLLGGNSLYLS
Sbjct: 250 STSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEPFNNCERMESVLIVLLGGNSLYLS 309

Query: 181 KEPFNNCERMESVLIV 197
           KEPFNNCERMESVLIV
Sbjct: 310 KEPFNNCERMESVLIV 325

[Close]

BLAST of Cucsa.019250.3 vs. NCBI nr
Match: gi|449462800|ref|XP_004149128.1| (PREDICTED: coiled-coil domain-containing protein 94 homolog [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 7.2e-67
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 120
           EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT
Sbjct: 190 EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 249

Query: 121 STSSKAGFLHSRMGE 136
           STSSKAGFLHSRMGE
Sbjct: 250 STSSKAGFLHSRMGE 264

[Close]

BLAST of Cucsa.019250.3 vs. NCBI nr
Match: gi|593697700|ref|XP_007149323.1| (hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris])

HSP 1 Score: 170.2 bits (430), Expect = 3.7e-39
Identity = 95/163 (58.28%), Postives = 113/163 (69.33%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVS+D ML ALQRTAA+KEK+LEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTAADKEKRLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRVSEGSPHDPT 120
           EDEALIKS+VF+NS  +VRRI D++ +    +  L+N    S +  KKQ++SE  P  PT
Sbjct: 190 EDEALIKSVVFHNSEGFVRRIPDEDIESEEELDQLSNGHGESSYNPKKQKISEDHPSKPT 249

Query: 121 STSSKAGFLHSRMGEVDRKALSIQKRGNGK------IIVIKEP 158
            + +KA         +D       KR  GK      I VIK+P
Sbjct: 250 DSLTKA--------SLDDSGKQENKRNGGKLNPLVRISVIKKP 284

[Close]

BLAST of Cucsa.019250.3 vs. NCBI nr
Match: gi|1012326357|gb|KYP38169.1| (Coiled-coil domain-containing protein 94 [Cajanus cajan])

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVS+D ML ALQRTAA+KEK+LEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTAADKEKRLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFD-DGSIVQHLTNNDIASDFKAKKQRVSEGSPHDP 120
           EDEAL+KS+VF+NS  YV+RISD++ + +  +VQ    +   S+F  K+Q++SE  P  P
Sbjct: 190 EDEALLKSVVFHNSEGYVKRISDEDIETEEQLVQLSNGHGETSNFNPKRQKISEDFPSKP 249

Query: 121 TSTSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEP 158
           T T +KA    S   E  R    +      +I VIK+P
Sbjct: 250 TDTLTKANLDDSGKQENSRSGGKLNSL--VRISVIKKP 285

[Close]

BLAST of Cucsa.019250.3 vs. NCBI nr
Match: gi|571500689|ref|XP_006594687.1| (PREDICTED: coiled-coil domain-containing protein 94 homolog [Glycine max])

HSP 1 Score: 163.3 bits (412), Expect = 4.6e-37
Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 1


Query: 1   MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTAAEKEKKLEE 60
           MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVS+D ML ALQRTAA+KEK+LEE
Sbjct: 130 MGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTAADKEKRLEE 189

Query: 61  EDEALIKSIVFNNSNSYVRRISDDEFD-DGSIVQHLTNNDIASDFKAKKQRVSEGSPHDP 120
           EDEALIKS+VF+NS+ +VRRI D++ + +  +VQ    +   S    K+Q++SE  P  P
Sbjct: 190 EDEALIKSVVFHNSDGFVRRIRDEDIETEEELVQFSNGHGETSSSNPKRQKISEDFPSKP 249

Query: 121 TSTSSKAGFLHSRMGEVDRKALSIQKRGNGKIIVIKEP 158
           T T +KA       G+ +      +     +I VIK+P
Sbjct: 250 TDTLTKASL--DDYGKQENSRSGGKLNSLVRISVIKKP 285

The following BLAST results are available for this feature:

BLAST of Cucsa.019250.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD94_DICDI	3.3e-11	37.14	Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=...	[more]
CWF16_SCHPO	4.2e-06	34.09	Pre-mRNA-splicing factor cwf16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
CCD94_HUMAN	5.5e-06	41.27	Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94 PE=1 SV=1	[more]
CCD94_MOUSE	5.5e-06	34.09	Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94 PE=1 SV=1	[more]

BLAST of Cucsa.019250.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL62_CUCSA	1.3e-102	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003615 PE=4 SV=1	[more]
V7BTJ2_PHAVU	2.6e-39	58.28	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G060900g PE=4 SV=1	[more]
A0A151R6P8_CAJCA	7.6e-39	59.49	Coiled-coil domain-containing protein 94 OS=Cajanus cajan GN=KK1_040604 PE=4 SV=...	[more]
A0A0S3STT0_PHAAN	1.2e-36	65.08	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G317800 PE=...	[more]
A0A0L9TUN7_PHAAN	1.2e-36	65.08	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g045300 PE=4 SV=1	[more]

BLAST of Cucsa.019250.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17130.2	2.5e-33	53.94	Family of unknown function (DUF572)	[more]
AT2G32050.1	2.3e-18	57.47	Family of unknown function (DUF572)	[more]
AT3G43250.1	1.7e-13	50.60	Family of unknown function (DUF572)	[more]

BLAST of Cucsa.019250.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194392\|gb\|KGN49569.1\|	1.8e-102	100.00	hypothetical protein Csa_5G003615 [Cucumis sativus]	[more]
gi\|449462800\|ref\|XP_004149128.1\|	7.2e-67	100.00	PREDICTED: coiled-coil domain-containing protein 94 homolog [Cucumis sativus]	[more]
gi\|593697700\|ref\|XP_007149323.1\|	3.7e-39	58.28	hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]	[more]
gi\|1012326357\|gb\|KYP38169.1\|	1.1e-38	59.49	Coiled-coil domain-containing protein 94 [Cajanus cajan]	[more]
gi\|571500689\|ref\|XP_006594687.1\|	4.6e-37	57.59	PREDICTED: coiled-coil domain-containing protein 94 homolog [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007590	CWC16

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.019250	Cucsa.019250	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.019250.3	Cucsa.019250.3-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.019250.3.CDS.6	Cucsa.019250.3.CDS.6	CDS
Cucsa.019250.3.CDS.5	Cucsa.019250.3.CDS.5	CDS
Cucsa.019250.3.CDS.4	Cucsa.019250.3.CDS.4	CDS
Cucsa.019250.3.CDS.3	Cucsa.019250.3.CDS.3	CDS
Cucsa.019250.3.CDS.2	Cucsa.019250.3.CDS.2	CDS
Cucsa.019250.3.CDS.1	Cucsa.019250.3.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.019250.3.three_prime_UTR.1	Cucsa.019250.3.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.019250.3.five_prime_UTR.3	Cucsa.019250.3.five_prime_UTR.3	five_prime_UTR
Cucsa.019250.3.five_prime_UTR.2	Cucsa.019250.3.five_prime_UTR.2	five_prime_UTR
Cucsa.019250.3.five_prime_UTR.1	Cucsa.019250.3.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007590	CWC16 protein	PANTHER	PTHR12111	CELL CYCLE CONTROL PROTEIN CWF16-RELATED	coord: 1..126 score: 5.1
IPR007590	CWC16 protein	PFAM	PF04502	DUF572	coord: 2..145 score: 2.4
None	No IPR available	unknown	Coil	Coil	coord: 44..64 scor
None	No IPR available	PANTHER	PTHR12111:SF1	COILED-COIL DOMAIN-CONTAINING PROTEIN 94	coord: 1..126 score: 5.1