Cucsa.017340.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.017340.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA binding (RRM/RBD/RNP motifs) family protein
Location	scaffold00245 : 48886 .. 52998 (-)
Sequence length	1157

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCTCTCTCTACAAGAAATTCTTCGTATTCTTCTATCATTTTCATTAGAGCTATGCAGGTTGTTAATCCCTCAATTCCCATTTCTTTCAATTTCTGCTCTCTGATTTCCGTTATCAATTTTAATTTTTCGTTTGTTTGTTGTTTTTTTTTTTCATCTTCATTTCTTCTGTTCAGTCTCAGACTAGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCACATAGAGATTCAATGGTAACTAATTATTAACTCTGTGTTACTACTCTCTACAATTGCAAAAAGTGGTAAACTAAACAAATCACGTGCTTGCTTCATTCATTAGTTCATTTATTCATTCATTTTGAATATTTAGTTTTAGGTTTCCTACTGTTTAAGCATGTGGGTTTTGTGGCTTTCTCTTTGATTTTTCTTTTTTATTCTTGTTTTTTAATTGTGAGGCTTGTAATTGTTATAGCTGACAAGTAATTAATTAAGGAAGCACACCCGCCCTGAGATTGTTTTGTCTAATTTATTCTTCTTGTTGCAGTGAACAAGGGGAATCCAAGACTGCGTTTGTTACATTTACAGATCCTAAAGCTCTTGAAATTGCCTTGTTGTTATCGGTATGTCATTATCTATCTCGGTTCTCTTTCATATCCATGAAGTCAGTTATCCTGATGCGTTTGTTGAATTTGTGGTTTTTACAATGAATTCAAAGAGCGTTATTTTGAAGTTTGGTTGAACATTTAGCAATGTTTACCTTCTTATTTAAGCCATGTTGATTGTTAGTGTGTAGTTAGTTCTATAGCCTCTTTGCTTTTATTTCCTTCATTTTCTTGCCATTAGTTTTGATTGAGTTGAAAAGTGATGGATGAGTAGAATCTCGGTTTATTGCTTTTCTTCAGAAGAAGAATTTTTTACACGTAACCTCAAACATAAAGAGGGAAATTTCTTTAGAGCTGTAATATACAATCTTTTGGTTGAAGCTACCCTGCTTTTGCATTTTGTTTTTCTGGTCAACACTCTGCTCTTTCTAATAAAATAATACTAATATTAAAACCATACATAAGTTATTTAGCATTGGTTTTAAGTCCATAATTTTGGAGTGGAAAACAACTCAAGGAAAGCAAGGATGAAAAAGAAATGAGAGTAACAGTTGAAAGTGAATCTATTAAACTGAACTTTATGAACAAACATCTGCCTTGCTTTACTTTTTGTTACAAATAAAAGCATAAGTGAGAAGTAGTACCAAATAGACATGTTTATTGAAAAAGAAGTAAGCTAATACCTTTTCTTTGCATAATCATTTTTTTACACAATAATGGAATTATTTTATATTTTTATCCGGAAATATACCTTTCCTTCTTCATATCTGGTTGATGCCATAAGCTACTATATACATTTTTTACTATTTATTTGTTTGTTATTTAGGGAGCAACAATTGTGGATAAGATCGTGAGCATAACTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGTATTATTCTTGTGTTTGAATATTTTTCCAGGCCCACCTAGCTGTTTATTATATGTTCAATATTTTAAATTTACTATGTTTTTAGGAAGTACGGGTTGCAGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTCTCCTAGCATTGAGGTAAATGTGCTTACCCCACTCTACGAATATCAAGTATTTGTGTAGCATATCCTTTCACATTGATATACTATTAAAGGAAAACCAAGGCTGGGGAGTTTCATCAAATGGAAATGTTTAAGATTTGTTCAGATTTTCTTAAGTTGATGTAGCTGGATGAAAAGTAAAACCTTCATTTACTGCATGCCGTCATGAACCTCACTACACTTACTAAAAGTAATGTGAAGAACTGGTGAAACAGTTCCACAGTTTTAGTTTTCATGTGGATCTTGATTTCCATGATTTATTTAACTATACAAGTGTATAGTGAGGCACCTTTTCTTTTCTTTTTTTTTTCTTTCCTCTTTTCTGTTCTTTTTTTTGTTTTTGTTTTGCACCTTAAATCTTTTTGTATTTACTAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTCGCAACTGTGCTTGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCAGTTAACAGCCAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTTACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTGGATCAAAAGCTTCATGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGCTCTGCTGTCAAAACAAGCAAGTATGAATCATCATTCTTGAGGAAGCATTTGTTGTCATTTTCATTTGCACTGCTCTTTTCTGCTAGCTCATCCCTTAAGAAATTTTTACTTCCCTTCTGCTATCTTCAAATTTTAGATCTTGAATATTCTCCACTCTTAGCAAGAAAGCAGAAAACTAGTTTTCTAAAACAGCTCTAAAACAGGTCCCTAGTGTTTCAACTTCTTGAAAACTTTGCATCCACATACAGTCGTATATTTCTTTATCCAAATAAATTACAATGGTTTCTACTATTCATTTTGAATTAAGCAGTTATGACAACAGACGGAAGTGAATTAATGTTTCACTCCATCTTGGCTTTGAACAGGTATGTGACAGCAAGTGCTGCATGGCTAAATGGCGCTTTTGGCAAGGTCGCTAAAGCAGGGCAAGCAGCAGGTACAAAAACCAGAGAAAAGTTCCATTTGGCTATGTCAAACTTAATTTCAAAGGTGCGTTTTAGAAATGAAACTCTTTTCTATGACGACTTTAAAGTTGAGATTCTTTGGGAAATAGCTTTCTTGTGAGTAGCTAAGAACAAGCGTAGGAACAACAGTTTTTTTAAATTAGTTACGTGAATATATTTTTCTAGTTTTTTGTTTTATGGATTGGCCAAAACCATGCCTATAAAAGGAATTTTTCCAAAAAAGAGTAAGCTCTCTAAAACCTCACTTTGTTCATGTCTCCTTTAAAGAACCTAGGCTTTTTGGAGTCATAAAGAAAAACACAAGGTGTTAATAACAAGAACGATTAATTAAAATCAACATTTTTTCATTAATGTTTAAAGCTCTTTACAAACAACCAAAGTTTGGCTTACTTACCTGTTTGGATTTATTTTAAAAAGTATGTGTATGTACAAAGAAAAATAACAAACAATAATCTATTTTTAGCATTTTCAATTCAAACAAATCTTCAAAGACTATCAAGATTATATATATATATAAAAAAAAAGCTAATAAAAAAAATTAACCTAACTAAGATCTCATTCGATAACTATTTTGTTTTTGAAATCTGTTTGTTTCTTCACAATTTTTCTATTATTATTTTCAACTATTTTAAAGAAACACTTGAATATTTAGTCATGTTCTAAAGATGAAAAACTGAAGTTTTCAAAACTCTATTAGTTTTTGAAAACTTGAGTAAAAAGTGCCAATAAAGCCTAGAGATTTATGGGTGGTAGTAGTGCTTAAGAATTTATGTTAAGAAACCAGATGGTTATGAATCGAGACACAGAAACTAACAAAACTAAATCTATTTAATAATTTTTTTCTGTGAAATTCTCTCTAGTTAAAACTTGAAACTGCAGAAGGTTCATTATTGGCTGCACTCTGTTGTAGCTAACCTTTTTGCTTTGAAACATGCAGGAACCCCCAGTTGTTGCCTAAGCTTAAAACTTGCCTCTCACTTGGCTTGGTTGCTTGTATTTTCAGTGAGGTATTGAAATTAGTTTCTTGAATGTATTCTATTTCTTCAGTATTGTCCTCTATTGTTTTCTTTTTCGTTCTTTTTAAGTATTATTTTTTTATATTGTTCATATTCTTTTACAATGGTGTTTGGCTGATGACAATTTTGCATTTGTAAAATTGGTTATGGAAGTGTAAAGAAAGTCCAATTATGTTTTTGTCTTATACTCTTTAATTATTTGTTTAGAAATATCAAGTT

mRNA sequence

ctctctctctctctctctctctACAAGAAATTCTTCGTATTCTTCTATCATTTTCATTAGAGCTATGCAGTCTCAGACTAGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCACATAGAGATTCAATGTGAACAAGGGGAATCCAAGACTGCGTTTGTTACATTTACAGATCCTAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACAATTGTGGATAAGATCGTGAGCATAACTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGAAGTACGGGTTGCAGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTCTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTCGCAACTGTGCTTGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCAGTTAACAGCCAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTTACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTGGATCAAAAGCTTCATGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGCTCTGCTGTCAAAACAAGCAAGTATGTGACAGCAAGTGCTGCATGGCTAAATGGCGCTTTTGGCAAGGTCGCTAAAGCAGGGCAAGCAGCAGGTACAAAAACCAGAGAAAAGTTCCATTTGGCTATGTCAAACTTAATTTCAAAGGAACCCCCAGTTGTTGCCTAAGCTTAAAACTTGCCTCTCACTTGGCTTGGTTGCTTGTATTTTCAGTGAGGTATTGAAATTAGTTTCTTGAATGTATTCTATTTCTTCAGTATTGTCCTCTATTGTTTTCTTTTTCGTTCTTTTTAAGTATTATTTTTTTATATTGTTCATATTCTTTTACAATGGTGTTTGGCTGATGACAATTTTGCATTTGTAAAATTGGTTATGGAAGTGTAAAGAAAGTCCAATTATGTTTTTGTCTTATACTCTTTAATTATTTGTTTAGAAATATCAAGTT

Coding sequence (CDS)

ATGCAGTCTCAGACTAGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCACATAGAGATTCAATGTGAACAAGGGGAATCCAAGACTGCGTTTGTTACATTTACAGATCCTAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACAATTGTGGATAAGATCGTGAGCATAACTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGAAGTACGGGTTGCAGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTCTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTCGCAACTGTGCTTGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCAGTTAACAGCCAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTTACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTGGATCAAAAGCTTCATGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGCTCTGCTGTCAAAACAAGCAAGTATGTGACAGCAAGTGCTGCATGGCTAAATGGCGCTTTTGGCAAGGTCGCTAAAGCAGGGCAAGCAGCAGGTACAAAAACCAGAGAAAAGTTCCATTTGGCTATGTCAAACTTAATTTCAAAGGAACCCCCAGTTGTTGCCTAA

Protein sequence

MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA*

Homology

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BLAST of Cucsa.017340.1 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-49
Identity = 108/254 (42.52%), Postives = 161/254 (63.39%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           M SQ R+V+V ++S  ATE +I EFFSFSGE+E I+IQ  +    +A+VTF + +  E A
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNE---HSAYVTFKETQGAETA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           +LLSGA+I D+ V I  A N+ P                       P+   + +Q S  +
Sbjct: 61  VLLSGASIADQSVIIELAPNYSP-----------------------PAAPHAETQSSGAE 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
             V +A++VV+++LAKG  +G+DA+ KAKAFDEKH  T++A+A V S D+++GL++KLT 
Sbjct: 121 SVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTA 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           G S+VNEK+K+VDQ   V+++T +   AAE+ ++  GSAV  ++YV    +W  GAF +V
Sbjct: 181 GTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRV 228

Query: 241 AKAGQAAGTKTREK 255
           A+A    G KT+EK
Sbjct: 241 AQAAGEVGQKTKEK 228

[Close]

BLAST of Cucsa.017340.1 vs. Swiss-Prot
Match: VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-09
Identity = 57/256 (22.27%), Postives = 107/256 (41.80%), Query Frame = 1


Query: 8   VQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLLSGAT 67
           V V ++S   TE++I +FFSF G++ +I  + + GE++TA + F  P A + ALLL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTE-KSGETQTAKIQFERPSATKTALLLQDAL 64

Query: 68  IVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYVNRAQ 127
           +    + IT                +++    + T+      + +A Q    +       
Sbjct: 65  LGQNKIQIT----------------SEDGGAASTTDQGGAGGDQAARQEDKPR------S 124

Query: 128 EVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGISVVNE 187
            +++ +L++G  +    + K+   D+ + +++             G+ E    G+  VNE
Sbjct: 125 AIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFK----------GILESALSGVRSVNE 184

Query: 188 KVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKAGQAA 247
           +    ++   V +K     FA   KLN T S V T  +     A           AG +A
Sbjct: 185 RYHVTEKANEVDNK-----FAISDKLNRTSSLVSTYFHKALETA-----------AGTSA 211

Query: 248 GTKTREKFHLAMSNLI 264
           G K +  +    + L+
Sbjct: 245 GQKVQNAYEDGKNQLL 211

[Close]

BLAST of Cucsa.017340.1 vs. TrEMBL
Match: A0A0A0LNE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 1.3e-144
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 271

[Close]

BLAST of Cucsa.017340.1 vs. TrEMBL
Match: A0A0A0KYL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 5.3e-117
Identity = 230/271 (84.87%), Postives = 239/271 (88.19%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCEQG+S+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           LLLSGATIVD+IVSI+P ENHVPRREMQ                      DS SQ SSGK
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKHQLTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AKAGQAAGTKTREKFHLAMSNL SKE PVVA
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLTSKESPVVA 249

[Close]

BLAST of Cucsa.017340.1 vs. TrEMBL
Match: M5VRI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 5.1e-112
Identity = 209/270 (77.41%), Postives = 241/270 (89.26%), Query Frame = 1


Query: 2   QSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIAL 61
           Q QTRTVQVK +SDLA++REIHEFFSFSGEIE I+IQ E G+SKTAFVTF DPKALEIAL
Sbjct: 3   QLQTRTVQVKQLSDLASDREIHEFFSFSGEIERIQIQREPGQSKTAFVTFKDPKALEIAL 62

Query: 62  LLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKM 121
           LLSGATIVD+IV I+P EN+VP+ ++ EVR+ ++A C  P    SP+ ED  S P++G++
Sbjct: 63  LLSGATIVDQIVIISPVENYVPKTDVLEVRMVESAVCAAPDGILSPNAEDRNSPPTNGRV 122

Query: 122 YVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVG 181
           YVNRAQ+VV  ++AKGSAIGQDA+NKAKAFDEKH+LTASAS KV+SFD+RVGLTEKLTVG
Sbjct: 123 YVNRAQDVVTCIVAKGSAIGQDAVNKAKAFDEKHRLTASASEKVISFDKRVGLTEKLTVG 182

Query: 182 ISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVA 241
            SVVNEKVKSVDQ+LHVSDKTMAAIFAAERKLNDTGSAVKTS+YVTA AAWLNGAFGKVA
Sbjct: 183 FSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGAAWLNGAFGKVA 242

Query: 242 KAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           KAGQAAGTKTREKFH+A+SNL +KEPP+ A
Sbjct: 243 KAGQAAGTKTREKFHMAVSNLTAKEPPIAA 272

[Close]

BLAST of Cucsa.017340.1 vs. TrEMBL
Match: M5VQN1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.8e-109
Identity = 209/281 (74.38%), Postives = 241/281 (85.77%), Query Frame = 1


Query: 2   QSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIAL 61
           Q QTRTVQVK +SDLA++REIHEFFSFSGEIE I+IQ E G+SKTAFVTF DPKALEIAL
Sbjct: 3   QLQTRTVQVKQLSDLASDREIHEFFSFSGEIERIQIQREPGQSKTAFVTFKDPKALEIAL 62

Query: 62  LLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIE----------- 121
           LLSGATIVD+IV I+P EN+VP+ ++ EVR+ ++A C  P    SP+ E           
Sbjct: 63  LLSGATIVDQIVIISPVENYVPKTDVLEVRMVESAVCAAPDGILSPNAEVAIDTTTYLKQ 122

Query: 122 DSASQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDR 181
           D  S P++G++YVNRAQ+VV  ++AKGSAIGQDA+NKAKAFDEKH+LTASAS KV+SFD+
Sbjct: 123 DRNSPPTNGRVYVNRAQDVVTCIVAKGSAIGQDAVNKAKAFDEKHRLTASASEKVISFDK 182

Query: 182 RVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASA 241
           RVGLTEKLTVG SVVNEKVKSVDQ+LHVSDKTMAAIFAAERKLNDTGSAVKTS+YVTA A
Sbjct: 183 RVGLTEKLTVGFSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGA 242

Query: 242 AWLNGAFGKVAKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AWLNGAFGKVAKAGQAAGTKTREKFH+A+SNL +KEPP+ A
Sbjct: 243 AWLNGAFGKVAKAGQAAGTKTREKFHMAVSNLTAKEPPIAA 283

[Close]

BLAST of Cucsa.017340.1 vs. TrEMBL
Match: B9IPS4_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0019s05350g PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.5e-108
Identity = 204/266 (76.69%), Postives = 236/266 (88.72%), Query Frame = 1


Query: 4   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLL 63
           QTRTV+V++VSDLA+ERE+HEFFSFSGEIEHI IQ E G+SKTAFVTF DPKALEIALLL
Sbjct: 7   QTRTVEVRNVSDLASEREVHEFFSFSGEIEHIHIQRENGQSKTAFVTFKDPKALEIALLL 66

Query: 64  SGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYV 123
           SGAT+VD+IV+ITPAEN+V  RE+QEVR  +NA  + P+EN   ++E   S   SG++YV
Sbjct: 67  SGATLVDRIVTITPAENYVLNRELQEVRNVENAVSVVPSENFPSNVEGKTSPSGSGRVYV 126

Query: 124 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGIS 183
           +RAQEVV +VLAKGSAI QDAMNKAKAFDEKH+L+ASAS KV SFDRRVGLTEKLT+GIS
Sbjct: 127 SRAQEVVTSVLAKGSAISQDAMNKAKAFDEKHRLSASASEKVTSFDRRVGLTEKLTIGIS 186

Query: 184 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKA 243
           VVNEKVKSVDQ+LHVSDKTMAAIFAAERKLNDTGSAVK+S+YV+A  AWLNGAF KVA+A
Sbjct: 187 VVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKSSRYVSAGTAWLNGAFSKVARA 246

Query: 244 GQAAGTKTREKFHLAMSNLISKEPPV 270
           GQ AGTKTREKF+LA+SNL +KE P+
Sbjct: 247 GQVAGTKTREKFNLAVSNLTAKESPI 272

[Close]

BLAST of Cucsa.017340.1 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 371.3 bits (952), Expect = 5.0e-103
Identity = 195/265 (73.58%), Postives = 229/265 (86.42%), Query Frame = 1


Query: 5   TRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLLS 64
           TR+VQV +VSDLATEREIHEFFSFSG+IEHIEIQ E G+S+ AFVTFTDPKALEIALLLS
Sbjct: 4   TRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLS 63

Query: 65  GATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYVN 124
           GATIVD+IV+IT AEN+V RRE QEVR+ DNA  L   E+ +   +   +   + + YV+
Sbjct: 64  GATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTT---QTKTNMDGNSRAYVS 123

Query: 125 RAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGISV 184
           +AQ+VVATVLAKGSA+GQDA+NKAKAFDEKHQL A+ASAKV SFD+RVGLTEKL+VGIS 
Sbjct: 124 KAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISA 183

Query: 185 VNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKAG 244
           VNEKVKSVDQKL VSDKTMAAIFAAERKLNDTGSAVK+S+YVTA AAW +GAF KVA+ G
Sbjct: 184 VNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVG 243

Query: 245 QAAGTKTREKFHLAMSNLISKEPPV 270
           Q AG+KT+EKF+LA+SN+ SK+ P+
Sbjct: 244 QVAGSKTKEKFNLAVSNMSSKDTPI 265

[Close]

BLAST of Cucsa.017340.1 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 211.8 bits (538), Expect = 5.1e-55
Identity = 115/252 (45.63%), Postives = 166/252 (65.87%), Query Frame = 1


Query: 7   TVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLLSGA 66
           TV+V +VS  AT+R++ EFFSFSG+I ++E Q E   +K A+VTF D +  E A+LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  TIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYVNRA 126
           TIVD  V ++ A ++                 L+P    S   +DS   P +G   + +A
Sbjct: 65  TIVDSSVIVSMAPDYQ----------------LSPEALASLEPKDSNKSPKAGDSVLRKA 124

Query: 127 QEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGISVVN 186
           ++VV+++LAKG  +G+DA+ KAK+ DEKHQLT++ASAKV SFD+++G T+K+  G  VV 
Sbjct: 125 EDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVG 184

Query: 187 EKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKAGQA 246
           EKV+ VDQK  VS+KT +AI AAE+ +++ GSA+  ++YV   A W+ GAF KVAKA + 
Sbjct: 185 EKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEE 240

Query: 247 AGTKTREKFHLA 259
            G K +EK  +A
Sbjct: 245 VGQKAKEKVGMA 240

[Close]

BLAST of Cucsa.017340.1 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 208.8 bits (530), Expect = 4.3e-54
Identity = 112/252 (44.44%), Postives = 170/252 (67.46%), Query Frame = 1


Query: 7   TVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLLSGA 66
           TV+V +VS  ATER++ EFFSFSG+I ++E Q E   SK A+VTF D +  E A+LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  TIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYVNRA 126
           TIVD  V++T +    P  ++    +A   +     +++SP+ ED +           +A
Sbjct: 65  TIVDSSVTVTMS----PDYQLPPDALASIESLKESNKSSSPTREDVS--------VFRKA 124

Query: 127 QEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGISVVN 186
           ++VV+ +++KG  +G+DA+ KAK+ DEKHQLT++ASA+V SFD+R+G TEK+  G +VV+
Sbjct: 125 EDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVS 184

Query: 187 EKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKAGQA 246
           EKVK VDQK  V++KT +AI AAE+ +++ GSA+  ++YV   A W+ GAF +V+KA + 
Sbjct: 185 EKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEE 244

Query: 247 AGTKTREKFHLA 259
            G K +EK  LA
Sbjct: 245 VGQKAKEKVGLA 244

[Close]

BLAST of Cucsa.017340.1 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-50
Identity = 109/254 (42.91%), Postives = 160/254 (62.99%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           M SQ R+V+V ++S  ATE +I EFFSFSGE+E I+IQ     S  A+VTF + +  E A
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           +LLSGA+I D+ V I  A N+ P                       P+   + +Q S  +
Sbjct: 61  VLLSGASIADQSVIIELAPNYSP-----------------------PAAPHAETQSSGAE 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
             V +A++VV+++LAKG  +G+DA+ KAKAFDEKH  T++A+A V S D+++GL++KLT 
Sbjct: 121 SVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTA 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           G S+VNEK+K+VDQ   V+++T +   AAE+ ++  GSAV  ++YV    +W  GAF +V
Sbjct: 181 GTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRV 229

Query: 241 AKAGQAAGTKTREK 255
           A+A    G KT+EK
Sbjct: 241 AQAAGEVGQKTKEK 229

[Close]

BLAST of Cucsa.017340.1 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 93/241 (38.59%), Postives = 152/241 (63.07%), Query Frame = 1


Query: 3   SQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALL 62
           S  +TV++ +VS + +++++ EFFSFSG+I+++E++ E  ES+ A+VTF D +  E A+L
Sbjct: 26  SGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAML 85

Query: 63  LSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMY 122
           L+GA I D  VSITPA N+         ++   A  L   E+            S     
Sbjct: 86  LTGAVIADLRVSITPAVNY---------QLPPEALALDSQEH------------SFNGFS 145

Query: 123 VNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGI 182
           V +A++VV  ++ +G A+G+DAM KAKAFD++H L ++ASA + S D ++GL+EKL++G 
Sbjct: 146 VKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGT 205

Query: 183 SVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAK 242
           +VVNEK++ +D++  V + T +A+ AAE       +A+  + YV++ A+W + AFG V K
Sbjct: 206 TVVNEKLRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTK 245

Query: 243 A 244
           A
Sbjct: 266 A 245

[Close]

BLAST of Cucsa.017340.1 vs. NCBI nr
Match: gi|449468279|ref|XP_004151849.1| (PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus])

HSP 1 Score: 520.4 bits (1339), Expect = 1.9e-144
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 271

[Close]

BLAST of Cucsa.017340.1 vs. NCBI nr
Match: gi|659125669|ref|XP_008462804.1| (PREDICTED: uncharacterized protein LOC103501087 [Cucumis melo])

HSP 1 Score: 516.2 bits (1328), Expect = 3.6e-143
Identity = 269/271 (99.26%), Postives = 270/271 (99.63%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           LLLSGATIVDKIVSITPAENHVPRRE+QEVRVADNAACLTPTENNSPS EDSASQPSSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREIQEVRVADNAACLTPTENNSPSREDSASQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AKAGQAAGTKTREKFHLAMSNLISKEPPVVA
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 271

[Close]

BLAST of Cucsa.017340.1 vs. NCBI nr
Match: gi|659082717|ref|XP_008441995.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo])

HSP 1 Score: 470.3 bits (1209), Expect = 2.3e-129
Identity = 247/271 (91.14%), Postives = 255/271 (94.10%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSGEIEHIEIQCEQGES+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           LLLSGATIVD+ VSI+P ENHVPRREMQ   V DNAACLTPTENN P+ EDS SQPSSGK
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQ---VVDNAACLTPTENNFPNTEDSGSQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGS IGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AKAGQAAGTKTREKFHLAMSNL SKE PVVA
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLTSKESPVVA 268

[Close]

BLAST of Cucsa.017340.1 vs. NCBI nr
Match: gi|659082719|ref|XP_008441996.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo])

HSP 1 Score: 431.8 bits (1109), Expect = 8.9e-118
Identity = 232/271 (85.61%), Postives = 239/271 (88.19%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSGEIEHIEIQCEQGES+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           LLLSGATIVD+ VSI+P ENHVPRREMQ                      DS SQPSSGK
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQ----------------------DSGSQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGS IGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AKAGQAAGTKTREKFHLAMSNL SKE PVVA
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLTSKESPVVA 249

[Close]

BLAST of Cucsa.017340.1 vs. NCBI nr
Match: gi|449462774|ref|XP_004149115.1| (PREDICTED: protein vip1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 428.7 bits (1101), Expect = 7.5e-117
Identity = 230/271 (84.87%), Postives = 239/271 (88.19%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCEQG+S+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120
           LLLSGATIVD+IVSI+P ENHVPRREMQ                      DS SQ SSGK
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKHQLTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLISKEPPVVA 272
           AKAGQAAGTKTREKFHLAMSNL SKE PVVA
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLTSKESPVVA 249

The following BLAST results are available for this feature:

BLAST of Cucsa.017340.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	3.9e-49	42.52	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]
VIPI_SCHPO	5.2e-09	22.27	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1...	[more]

BLAST of Cucsa.017340.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNE8_CUCSA	1.3e-144	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1	[more]
A0A0A0KYL6_CUCSA	5.3e-117	84.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1	[more]
M5VRI4_PRUPE	5.1e-112	77.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1	[more]
M5VQN1_PRUPE	1.8e-109	74.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1	[more]
B9IPS4_POPTR	1.5e-108	76.69	RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_...	[more]

BLAST of Cucsa.017340.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G32450.1	5.0e-103	73.58	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	5.1e-55	45.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	4.3e-54	44.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	1.7e-50	42.91	binding partner of acd11 1	[more]
AT1G67950.3	1.5e-43	38.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.017340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468279\|ref\|XP_004151849.1\|	1.9e-144	100.00	PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus]	[more]
gi\|659125669\|ref\|XP_008462804.1\|	3.6e-143	99.26	PREDICTED: uncharacterized protein LOC103501087 [Cucumis melo]	[more]
gi\|659082717\|ref\|XP_008441995.1\|	2.3e-129	91.14	PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo]	[more]
gi\|659082719\|ref\|XP_008441996.1\|	8.9e-118	85.61	PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo]	[more]
gi\|449462774\|ref\|XP_004149115.1\|	7.5e-117	84.87	PREDICTED: protein vip1-like isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.017340	Cucsa.017340	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.017340.1	Cucsa.017340.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.017340.1.CDS.8	Cucsa.017340.1.CDS.8	CDS
Cucsa.017340.1.CDS.7	Cucsa.017340.1.CDS.7	CDS
Cucsa.017340.1.CDS.6	Cucsa.017340.1.CDS.6	CDS
Cucsa.017340.1.CDS.5	Cucsa.017340.1.CDS.5	CDS
Cucsa.017340.1.CDS.4	Cucsa.017340.1.CDS.4	CDS
Cucsa.017340.1.CDS.3	Cucsa.017340.1.CDS.3	CDS
Cucsa.017340.1.CDS.2	Cucsa.017340.1.CDS.2	CDS
Cucsa.017340.1.CDS.1	Cucsa.017340.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.017340.1.three_prime_UTR.1	Cucsa.017340.1.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.017340.1.five_prime_UTR.1	Cucsa.017340.1.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..69 score: 4.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..76 score: 1.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 6..80 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..84 score: 9.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..88 score: 1.32