CsaV3_UNG230150.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG230150.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	scaffold116 : 108730 .. 108954 (-)
Sequence length	225

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAAGCTTTGACTACACGCCAACGTTCCCCCTCCGTGCCGCCGCCCATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCAGTAA

mRNA sequence

ATGAACCAAGCTTTGACTACACGCCAACGTTCCCCCTCCGTGCCGCCGCCCATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCAGTAA

Coding sequence (CDS)

ATGAACCAAGCTTTGACTACACGCCAACGTTCCCCCTCCGTGCCGCCGCCCATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCAGTAA

Protein sequence

MNQALTTRQRSPSVPPPMAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHSQ

Homology

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BLAST of CsaV3_UNG230150.1 vs. NCBI nr
Match: KGN47449.1 (hypothetical protein Csa_6G326160 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-14
Identity = 53/82 (64.63%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MNQALTTRQRSPSVPPPMAVPNSRPWKKLRAAASAKS--------KPNSSRIHAEDKLQL 60
          MNQALTT    P+ PPP      RPW+    A    S        KPNSSRIHAEDKLQL
Sbjct: 1  MNQALTT---PPTSPPPC----RRPWRCQILAPGRNSGLQLPLNHKPNSSRIHAEDKLQL 60

Query: 61 QVFCSGDLRRLQRFLSNRFHSQ 75
          QVFCSGDLRRLQRFLSNRFHSQ
Sbjct: 61 QVFCSGDLRRLQRFLSNRFHSQ 75

[Close]

BLAST of CsaV3_UNG230150.1 vs. TrEMBL
Match: tr|A0A0A0KF56|A0A0A0KF56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 53/82 (64.63%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MNQALTTRQRSPSVPPPMAVPNSRPWKKLRAAASAKS--------KPNSSRIHAEDKLQL 60
          MNQALTT    P+ PPP      RPW+    A    S        KPNSSRIHAEDKLQL
Sbjct: 1  MNQALTT---PPTSPPPC----RRPWRCQILAPGRNSGLQLPLNHKPNSSRIHAEDKLQL 60

Query: 61 QVFCSGDLRRLQRFLSNRFHSQ 75
          QVFCSGDLRRLQRFLSNRFHSQ
Sbjct: 61 QVFCSGDLRRLQRFLSNRFHSQ 75

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG230150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47449.1	1.7e-14	64.63	hypothetical protein Csa_6G326160 [Cucumis sativus]	[more]

BLAST of CsaV3_UNG230150.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG230150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG230150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KF56\|A0A0A0KF56_CUCSA	1.1e-14	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_UNG230150	CsaV3_UNG230150	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_UNG230150.1.cds1	CsaV3_UNG230150.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_UNG230150.1.exon1	CsaV3_UNG230150.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_UNG230150.1	CsaV3_UNG230150.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48