CsaV3_UNG168300.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG168300.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotein FAR1-RELATED SEQUENCE 11 isoform X2
Locationscaffold77 : 104297 .. 104738 (+)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAAATTAGGGCTCTGCTCCTTTCACTTTCACATCTTCGTGGCGCCATCTCCACCTTTAAATCCCGGTAAAAACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAGTTTTCCCTACTCCCGATTCATAATCATGAATGAATTCGAAGGGATCTGTTTGCCCGTTTTATTCTTTACAATATACACACCTGACCCAGATTGCTAATTTTTTTTTCGGAATGAAAATTAGACGTGTAGGCCGTCTTCTTGTTTTAAATTTGTGCCAATTTGATTATGATCTCCGCAGTTGAAGGTTTTAGTTCATTTGGTCAATTCTGGCTTTTATCTGAATATGATGACATAACAGTTTTGCAAGGAAAATTTTTCGTTTTTGCGAATTCATTACCAGCTGTCTGCACTATATTTGAGCTCTGGGAGGGCATTTCACGGGCCGTGTGA

mRNA sequence

ATGCGCAAATTAGGGCTCTGCTCCTTTCACTTTCACATCTTCGTGGCGCCATCTCCACCTTTAAATCCCGTTGAAGGTTTTAGTTCATTTGGTCAATTCTGGCTTTTATCTGAATATGATGACATAACAGTTTTGCAAGGAAAATTTTTCGTTTTTGCGAATTCATTACCAGCTGTCTGCACTATATTTGAGCTCTGGGAGGGCATTTCACGGGCCGTGTGA

Coding sequence (CDS)

ATGCGCAAATTAGGGCTCTGCTCCTTTCACTTTCACATCTTCGTGGCGCCATCTCCACCTTTAAATCCCGTTGAAGGTTTTAGTTCATTTGGTCAATTCTGGCTTTTATCTGAATATGATGACATAACAGTTTTGCAAGGAAAATTTTTCGTTTTTGCGAATTCATTACCAGCTGTCTGCACTATATTTGAGCTCTGGGAGGGCATTTCACGGGCCGTGTGA

Protein sequence

MRKLGLCSFHFHIFVAPSPPLNPVEGFSSFGQFWLLSEYDDITVLQGKFFVFANSLPAVCTIFELWEGISRAV
Homology
[Close]
BLAST of CsaV3_UNG168300.1 vs. NCBI nr
Match: KGN49572.1 (hypothetical protein Csa_5G003640 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 4.5e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MRKLGLCSFHFHIFVAPSPPLNPVEGFSSFGQFWLLSEYDDITVLQGKFFVFANSLPAVC 60
          MRKLGLCSFHFHIFVAPSPPLNPVEGFSSFGQFWLLSEYDDITVLQGKFFVFANSLPAVC
Sbjct: 1  MRKLGLCSFHFHIFVAPSPPLNPVEGFSSFGQFWLLSEYDDITVLQGKFFVFANSLPAVC 60

Query: 61 TIFELWEGISRAV 74
          TIFELWEGISRAV
Sbjct: 61 TIFELWEGISRAV 73

[Close]
BLAST of CsaV3_UNG168300.1 vs. TrEMBL
Match: tr|A0A0A0KMG1|A0A0A0KMG1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003640 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MRKLGLCSFHFHIFVAPSPPLNPVEGFSSFGQFWLLSEYDDITVLQGKFFVFANSLPAVC 60
          MRKLGLCSFHFHIFVAPSPPLNPVEGFSSFGQFWLLSEYDDITVLQGKFFVFANSLPAVC
Sbjct: 1  MRKLGLCSFHFHIFVAPSPPLNPVEGFSSFGQFWLLSEYDDITVLQGKFFVFANSLPAVC 60

Query: 61 TIFELWEGISRAV 74
          TIFELWEGISRAV
Sbjct: 61 TIFELWEGISRAV 73

[Close]
BLAST of CsaV3_UNG168300.1 vs. TrEMBL
Match: tr|A0A1S4E5V1|A0A1S4E5V1_CUCME (protein FAR1-RELATED SEQUENCE 11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502896 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-04
Identity = 22/25 (88.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 1  MRKLGLCSFHFHIFVAPSPPLNPVE 26
          MRKLGLCSFHFHIFVAP  PLNP E
Sbjct: 1  MRKLGLCSFHFHIFVAPYTPLNPDE 25

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG168300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49572.14.5e-36100.00hypothetical protein Csa_5G003640 [Cucumis sativus][more]
BLAST of CsaV3_UNG168300.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG168300.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG168300.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMG1|A0A0A0KMG1_CUCSA3.0e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003640 PE=4 SV=1[more]
tr|A0A1S4E5V1|A0A1S4E5V1_CUCME8.8e-0488.00protein FAR1-RELATED SEQUENCE 11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_UNG168300CsaV3_UNG168300gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_UNG168300.1.exon1CsaV3_UNG168300.1.exon1exon
CsaV3_UNG168300.1.exon2CsaV3_UNG168300.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_UNG168300.1.cds1CsaV3_UNG168300.1.cds1CDS
CsaV3_UNG168300.1.cds2CsaV3_UNG168300.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_UNG168300.1CsaV3_UNG168300.1-proteinpolypeptide