CsaV3_7G029430.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G029430.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DUF177 domain-containing protein
Location	chr7 : 18615840 .. 18618045 (+)
Sequence length	960

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTATAATATCTAATATACTCTTTCGTTCGTGGCTCCTCAACCAACTTAACTCGACTACAAAGTCCTTCCATGAGTTAAGGCACTGGATAAAATTTTTCCGGGGAGCGTCATCGAAATTCTCACCATTTTCAAGAACCTTAGGTACCTTTTCTCTTTTATTTCTCTGTTCTTAAGTAGTTCTTCCCATAATCTATTTTACGCAACTGGAATTTCTTGGATAAAGTTAATCTTCGAATTGGGTCACAAAATGTTTGAAGAAATGCCCGACTGAATTGCCCAATTAATTTGTTCCTACTTTAAGCTTGTCTAGTTTCTCTGGTGTTCTTGTAGGATGGGATTCTTTTCGCTTTGACTTCATTAGCTGATTACATATAATTTGCAGGGACGGTGTTATTTGTATCTACGGAAATTAATTTCTATCCCCTATTCGTTTAAGATGCTAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATGTATTCTACTTCAAATCCAAAGGGACTGTTTCTTTTGATTCACATTTTCGAGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTACTGCCATAAAGTGTGTGAAACCTACCTATCAATCCCTTTTTGAGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGGGAAGGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGCGTAACTAAAGATGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATAGGTAAATTCTAATTACAAATTAATTCCTTATACAACATTTCTATTTGATTGCTTTCAATCAACTGAAGCACACTAGACTAGACACTAAAATGCTAATCATTTTTGGTTCTCACAGGATTTTAATGAAGAAGGAAGTTTCTTCTATTCTATGTTTTGCATGTGTTTACTACTTATCTGGTGAAACCTTCCTTCCATAGCTAATTCCTGGTTGGATGGTCACTTGATACATATTTTTGAGACCTAGAATGGAAATATGGAATGCCACCTGTTTTAGGTTCTTACCACACTATTCTAGGTCCCAACTTCTGTAAAAAATTTCAGAAAATTTTTACTTCATGAGTGGATTTGAAACTTTTAGGGAAAAAACAAGGTTGATATTACAACTTTTGAATGATAGAGTTATTTTTGAAACAGAGAACAAGATTCAGAGTGTTTATTATAACTAACCTATGTAAAAGTAACCATACTACCTACTCAATGTTTGCGTTAGATTGCCTCTTAATTGATTTCAACAATTTTGACTTATCCATTGCACACAAGCCTAGTTGTTTTGGTTGTTCTCACATGTGAGATGAAGTATTTGCTTTCTCTGTTTTCTCCTCTTACACCTCCACGCCAATTTACTTCTTTGTGATGGTTCTATGCTCAAAATTTAGTCTATACCGTTTATCCTATTATCAGTGAGGTTCATTATATGCTAATCACTTGATGTTGTAGCTGTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGCGGAAAGGATATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACTCTATTTTCCTCCTCTGAACAAAGAGATAGATATATCAAAGAACATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAAATGTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAACAATTCTTAAAGACTTAGAATGCAAGACCATGTGTTCCTTTAAATTAAATCATTTCATTTAAAAAATGCGTGTTATCTTGGTTGATCTCTTTTACAAGTTC

mRNA sequence

ATGCTAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATGTATTCTACTTCAAATCCAAAGGGACTGTTTCTTTTGATTCACATTTTCGAGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTACTGCCATAAAGTGTGTGAAACCTACCTATCAATCCCTTTTTGAGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGGGAAGGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGCGTAACTAAAGATGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATAGCTGTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGCGGAAAGGATATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACTCTATTTTCCTCCTCTGAACAAAGAGATAGATATATCAAAGAACATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAAATGTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAACAATTCTTAA

Coding sequence (CDS)

ATGCTAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATGTATTCTACTTCAAATCCAAAGGGACTGTTTCTTTTGATTCACATTTTCGAGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTACTGCCATAAAGTGTGTGAAACCTACCTATCAATCCCTTTTTGAGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGGGAAGGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGCGTAACTAAAGATGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATAGCTGTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGCGGAAAGGATATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACTCTATTTTCCTCCTCTGAACAAAGAGATAGATATATCAAAGAACATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAAATGTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAACAATTCTTAA

Protein sequence

MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

Homology

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BLAST of CsaV3_7G029430.1 vs. NCBI nr
Match: XP_004136166.1 (PREDICTED: uncharacterized protein LOC101222143 [Cucumis sativus] >XP_011659367.1 PREDICTED: uncharacterized protein LOC101222143 [Cucumis sativus] >KGN44956.1 hypothetical protein Csa_7G398180 [Cucumis sativus])

HSP 1 Score: 649.8 bits (1675), Expect = 4.8e-183
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60
           MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS
Sbjct: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60

Query: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120
           TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER
Sbjct: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120

Query: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL
Sbjct: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180

Query: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240
           NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL
Sbjct: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240

Query: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300
           DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
Sbjct: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300

Query: 301 KKNDFGPLGDLKRRMQNNS 320
           KKNDFGPLGDLKRRMQNNS
Sbjct: 301 KKNDFGPLGDLKRRMQNNS 319

[Close]

BLAST of CsaV3_7G029430.1 vs. NCBI nr
Match: XP_008451550.1 (PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo])

HSP 1 Score: 612.5 bits (1578), Expect = 8.4e-172
Identity = 296/319 (92.79%), Postives = 311/319 (97.49%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60
           MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKS
Sbjct: 70  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 129

Query: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120
           T+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLER
Sbjct: 130 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 189

Query: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITL
Sbjct: 190 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 249

Query: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240
           NCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DL
Sbjct: 250 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 309

Query: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300
           DDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Sbjct: 310 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 369

Query: 301 KKNDFGPLGDLKRRMQNNS 320
           KKNDFGPLG+LKRRMQNNS
Sbjct: 370 KKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of CsaV3_7G029430.1 vs. NCBI nr
Match: XP_008451552.1 (PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo])

HSP 1 Score: 612.5 bits (1578), Expect = 8.4e-172
Identity = 296/319 (92.79%), Postives = 311/319 (97.49%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60
           MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKS
Sbjct: 53  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 112

Query: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120
           T+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLER
Sbjct: 113 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 172

Query: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITL
Sbjct: 173 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 232

Query: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240
           NCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DL
Sbjct: 233 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 292

Query: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300
           DDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Sbjct: 293 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 352

Query: 301 KKNDFGPLGDLKRRMQNNS 320
           KKNDFGPLG+LKRRMQNNS
Sbjct: 353 KKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of CsaV3_7G029430.1 vs. NCBI nr
Match: XP_022155011.1 (large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Momordica charantia])

HSP 1 Score: 495.7 bits (1275), Expect = 1.1e-136
Identity = 250/324 (77.16%), Postives = 276/324 (85.19%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFR-----VPWRLVRNIQPSLGDPC 60
           M ATFPTS +VSSSHSNEFI + + KSKG  SF+S+FR     VP+    NIQ ++    
Sbjct: 1   MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPF--TENIQATM---- 60

Query: 61  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYC 120
             +K  ++K VKP YQSLFEDN II+DWEDQEGD EEM SPWEGA+ YKRNSSVSHVEYC
Sbjct: 61  --LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYC 120

Query: 121 TTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVK 180
           TTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK KKLRLDGIVK
Sbjct: 121 TTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVK 180

Query: 181 TVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE 240
           TVITL+CY CCEPA EC+FSNFS+ILSEEPIEEP+VINMGIISG+D F T + NSD+DDE
Sbjct: 181 TVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDE 240

Query: 241 ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKC 300
           ELIDLDDQLYFPP+ KEIDISKNIRDILHLEITMN IC+PGCKG+CL CGINLN GSC C
Sbjct: 241 ELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNC 300

Query: 301 SKQAVKKNDFGPLGDLKRRMQNNS 320
           SKQ VKKNDFGPLG+LKR+MQ NS
Sbjct: 301 SKQDVKKNDFGPLGNLKRQMQKNS 316

[Close]

BLAST of CsaV3_7G029430.1 vs. NCBI nr
Match: XP_023514713.1 (large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 495.4 bits (1274), Expect = 1.5e-136
Identity = 246/324 (75.93%), Postives = 277/324 (85.49%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFR-----VPWRLVRNIQPSLGDPC 60
           M A FPTS+VV    SN FI +   KSKG    +S+FR     +P   ++NI PSLGD C
Sbjct: 1   MSAVFPTSAVV----SNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTFMKNIHPSLGDSC 60

Query: 61  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYC 120
           IK+KST++KCVKPT +S FEDN+IITDWEDQEG+IEEM SPWEGAIIYKRNSSVSH+EYC
Sbjct: 61  IKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEGAIIYKRNSSVSHLEYC 120

Query: 121 TTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVK 180
           TTLERLGLEKLSTDVSKSRAS MGL VTK VKDYPFGTPVQISVDVTRK KKLRLDGIVK
Sbjct: 121 TTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVK 180

Query: 181 TVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE 240
           TVITLNCY CCEPA EC+FSNFSI+LS++PI+EP+VIN+G+I+G+DMFKT +G  DEDDE
Sbjct: 181 TVITLNCYRCCEPAAECVFSNFSILLSQDPIDEPEVINVGVINGQDMFKTYDGYGDEDDE 240

Query: 241 ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKC 300
           E IDLDDQLYFP   KEIDISKNIRD+LHLEIT+N ICD GCKG+CL CGINLNTGSC C
Sbjct: 241 ESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDAGCKGMCLKCGINLNTGSCNC 300

Query: 301 SKQAVKKNDFGPLGDLKRRMQNNS 320
           SKQ V+KNDFGPLG+LKR+MQ NS
Sbjct: 301 SKQDVRKNDFGPLGNLKRQMQKNS 320

[Close]

BLAST of CsaV3_7G029430.1 vs. TAIR10
Match: AT3G19810.1 (Protein of unknown function (DUF177))

HSP 1 Score: 300.8 bits (769), Expect = 9.8e-82
Identity = 154/261 (59.00%), Postives = 192/261 (73.56%), Query Frame = 0


Query: 56  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYC 115
           IK+   A   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYC
Sbjct: 58  IKLPRLAKSRILVSQESFTETSTIDMDWEDQE-EIEDTGSPWEGSVMYRRNASVTHVEYC 117

Query: 116 TTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVK 175
           TTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPVQ+SVDV RK KKLRLDGIV+
Sbjct: 118 TTLERLGLGRLSTDVSKKRASAMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVR 177

Query: 176 TVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE 235
           TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +         
Sbjct: 178 TVITLGCNRCGESTGESIFSNFSLLLTEEPVEEPDVIDLGFTFGND--KEEXXXXXXXXX 237

Query: 236 ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKC 295
             ID +D+L+FPP  KEIDISK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C
Sbjct: 238 XWIDWEDKLHFPPEVKEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDC 297

Query: 296 SKQAVKKNDFGPLGDLKRRMQ 317
            ++  K   +GPLG+L+ +MQ
Sbjct: 298 GREE-KDKGYGPLGNLREQMQ 314

[Close]

BLAST of CsaV3_7G029430.1 vs. Swiss-Prot
Match: sp|Q9LT27|YCED1_ARATH (Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19810 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.8e-80
Identity = 154/261 (59.00%), Postives = 192/261 (73.56%), Query Frame = 0


Query: 56  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYC 115
           IK+   A   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYC
Sbjct: 58  IKLPRLAKSRILVSQESFTETSTIDMDWEDQE-EIEDTGSPWEGSVMYRRNASVTHVEYC 117

Query: 116 TTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVK 175
           TTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPVQ+SVDV RK KKLRLDGIV+
Sbjct: 118 TTLERLGLGRLSTDVSKKRASAMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVR 177

Query: 176 TVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDE 235
           TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +         
Sbjct: 178 TVITLGCNRCGESTGESIFSNFSLLLTEEPVEEPDVIDLGFTFGND--KEEXXXXXXXXX 237

Query: 236 ELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKC 295
             ID +D+L+FPP  KEIDISK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C
Sbjct: 238 XWIDWEDKLHFPPEVKEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDC 297

Query: 296 SKQAVKKNDFGPLGDLKRRMQ 317
            ++  K   +GPLG+L+ +MQ
Sbjct: 298 GREE-KDKGYGPLGNLREQMQ 314

[Close]

BLAST of CsaV3_7G029430.1 vs. Swiss-Prot
Match: sp|A0A1D6HQ92|YCED1_MAIZE (Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Zea mays OX=4577 GN=GRMZM2G433025 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.2e-53
Identity = 115/229 (50.22%), Postives = 162/229 (70.74%), Query Frame = 0


Query: 81  TDWEDQEGDIEE-MDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMG 140
           T  E +   I++ + SPWEGA++Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +G
Sbjct: 61  TGVEPEPDSIDDGLPSPWEGAVVYRRDAAVQHLEYASTLERLGLGDLSSPDSRARAADLG 120

Query: 141 LR-VTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFS 200
           L   T D       TPV +SVDVTR+  +LRLDGIV+TVITL C+ C EPAP+ IF+NFS
Sbjct: 121 LAGGTLDSTGAQPRTPVLVSVDVTRRRGRLRLDGIVRTVITLGCFRCAEPAPQGIFANFS 180

Query: 201 IILSEEPI-EEPDVINMGIISGKDMFKTDNGNSD----EDDEELIDLDDQLYFPPLNKEI 260
           ++L+E+P+ EEPD   +G I  +D    D G +      D ++ ID DD+L+FP  +KEI
Sbjct: 181 LLLTEDPVEEEPD---LGTIFQED---DDKGGASLACAMDGDQDIDWDDRLHFPAADKEI 240

Query: 261 DISKNIRDILHLEITMNVICDPGCKGICLNCGINLN-TGSCKCSKQAVK 302
           DISK+IRD++HLEIT++ +C+P CKG+CL CG NLN T SC C  + V+
Sbjct: 241 DISKHIRDMIHLEITLDAVCNPNCKGLCLTCGANLNTTSSCTCKPRNVQ 283

[Close]

BLAST of CsaV3_7G029430.1 vs. TrEMBL
Match: tr|A0A0A0KAY7|A0A0A0KAY7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398180 PE=4 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 3.1e-183
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60
           MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS
Sbjct: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60

Query: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120
           TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER
Sbjct: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120

Query: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL
Sbjct: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180

Query: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240
           NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL
Sbjct: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240

Query: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300
           DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
Sbjct: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300

Query: 301 KKNDFGPLGDLKRRMQNNS 320
           KKNDFGPLGDLKRRMQNNS
Sbjct: 301 KKNDFGPLGDLKRRMQNNS 319

[Close]

BLAST of CsaV3_7G029430.1 vs. TrEMBL
Match: tr|A0A1S3BR50|A0A1S3BR50_CUCME (uncharacterized protein LOC103492797 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492797 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 5.6e-172
Identity = 296/319 (92.79%), Postives = 311/319 (97.49%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60
           MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKS
Sbjct: 53  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 112

Query: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120
           T+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLER
Sbjct: 113 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 172

Query: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITL
Sbjct: 173 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 232

Query: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240
           NCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DL
Sbjct: 233 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 292

Query: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300
           DDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Sbjct: 293 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 352

Query: 301 KKNDFGPLGDLKRRMQNNS 320
           KKNDFGPLG+LKRRMQNNS
Sbjct: 353 KKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of CsaV3_7G029430.1 vs. TrEMBL
Match: tr|A0A1S3BSU8|A0A1S3BSU8_CUCME (uncharacterized protein LOC103492797 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492797 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 5.6e-172
Identity = 296/319 (92.79%), Postives = 311/319 (97.49%), Query Frame = 0


Query: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60
           MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKS
Sbjct: 70  MLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKMKS 129

Query: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120
           T+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA+IYKRNSSVSHVEYCTTLER
Sbjct: 130 TSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTLER 189

Query: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180
           LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITL
Sbjct: 190 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITL 249

Query: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240
           NCY CCEPAPECIFSNFSI+LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DL
Sbjct: 250 NCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESVDL 309

Query: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300
           DDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Sbjct: 310 DDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQAV 369

Query: 301 KKNDFGPLGDLKRRMQNNS 320
           KKNDFGPLG+LKRRMQNNS
Sbjct: 370 KKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of CsaV3_7G029430.1 vs. TrEMBL
Match: tr|A0A1U8BDN8|A0A1U8BDN8_NELNU (uncharacterized protein LOC104609774 OS=Nelumbo nucifera OX=4432 GN=LOC104609774 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.6e-92
Identity = 184/322 (57.14%), Postives = 231/322 (71.74%), Query Frame = 0


Query: 5   FPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGD---------PC 64
           F  S +V S   NEF ++   KS  T +F  +F + +  +    P L           P 
Sbjct: 5   FSPSFLVPSCAQNEF-SLCNSKSNKTYAFHQNFNLFYCNISRKTPCLSSKFPTFLRYYPS 64

Query: 65  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYC 124
             +  T    + P++  L  D ++  D   + GD E+  SPWEGAI+YKRN SVSH+EYC
Sbjct: 65  KTLYFTCRDGISPSFGQLDGDETMDFDL-GELGDEEDEGSPWEGAIVYKRNPSVSHLEYC 124

Query: 125 TTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVK 184
           TTLERLGL KLST++SKSRAS MGLRVTK VKD+P GTPVQIS+DVTRK +KLRLDGI++
Sbjct: 125 TTLERLGLGKLSTELSKSRASEMGLRVTKAVKDFPLGTPVQISIDVTRKKQKLRLDGIIR 184

Query: 185 TVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNS-DEDD 244
           TVITL C  C EPA EC+FSNF+++L+EEPIEEPDVINMG+I GKD FK+   +S + DD
Sbjct: 185 TVITLGCNRCGEPATECLFSNFTLLLTEEPIEEPDVINMGVIFGKDKFKSSMESSFENDD 244

Query: 245 EELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCK 304
           E  IDLDDQLYFP   KEIDISK+IRD++H+EIT+N IC P CKG+CL CG NLNTGSC 
Sbjct: 245 EASIDLDDQLYFPAEQKEIDISKHIRDMVHVEITINAICIPSCKGLCLRCGTNLNTGSCN 304

Query: 305 CSKQAVKKNDFGPLGDLKRRMQ 317
           CSKQ VK+ D+GPLG+L++++Q
Sbjct: 305 CSKQEVKEKDYGPLGNLRKQIQ 324

[Close]

BLAST of CsaV3_7G029430.1 vs. TrEMBL
Match: tr|A0A2P6SJD1|A0A2P6SJD1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0363071 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.7e-91
Identity = 182/320 (56.88%), Postives = 235/320 (73.44%), Query Frame = 0


Query: 7   TSSVVSSSHSNEFINVFYFKSKGTVSFDSHF-----RVPWRLVRNIQPSL-GDPCIKMKS 66
           +SS+++SS+ N+  +V   +S    S  S+F     + P  +  NI   L   P     S
Sbjct: 7   SSSILTSSYFNKH-SVSKLRSCENASKVSYFPFIQCKYPSCITENIHTGLRRKPNGISMS 66

Query: 67  TAIKCVKPTYQSLFEDNSIITDWEDQ-EGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLE 126
           T I C KP +QS  +++++  D  DQ   D E++DSPWEGA+IYKRN+S++HVEYCTTLE
Sbjct: 67  TVINCTKPNFQSFTDEDTVFLDLGDQGNEDGEDIDSPWEGAVIYKRNASITHVEYCTTLE 126

Query: 127 RLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVIT 186
           RLGL  LST+VSKSRAS MGLRVTK VKDYP GTPVQIS+D+TR+ +KLRLDGI+KTVIT
Sbjct: 127 RLGLGNLSTEVSKSRASVMGLRVTKAVKDYPNGTPVQISIDITRRKQKLRLDGIIKTVIT 186

Query: 187 LNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSD---EDDEE 246
           L C  C +PA E IFSNFS++L++EP+EEPD+INMG+I G D  KT  G  D   EDD++
Sbjct: 187 LTCNRCGDPAAESIFSNFSLLLTDEPVEEPDIINMGVIYG-DKVKTHTGFGDQGEEDDDD 246

Query: 247 LIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCS 306
            ID +DQLYF P +K+IDISK+IRD +HLEIT++  C+P CKG+CLNCG NLNT +C C 
Sbjct: 247 SIDFEDQLYFRPEDKQIDISKHIRDSVHLEITISATCNPNCKGLCLNCGKNLNTSNCICG 306

Query: 307 KQAVKKNDFGPLGDLKRRMQ 317
           K+ VKK  FGPLG+LK++MQ
Sbjct: 307 KEEVKKTTFGPLGNLKKQMQ 324

The following BLAST results are available for this feature:

BLAST of CsaV3_7G029430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136166.1	4.8e-183	100.00	PREDICTED: uncharacterized protein LOC101222143 [Cucumis sativus] >XP_011659367....	[more]
XP_008451550.1	8.4e-172	92.79	PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]	[more]
XP_008451552.1	8.4e-172	92.79	PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]	[more]
XP_022155011.1	1.1e-136	77.16	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [...	[more]
XP_023514713.1	1.5e-136	75.93	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [...	[more]

BLAST of CsaV3_7G029430.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19810.1	9.8e-82	59.00	Protein of unknown function (DUF177)	[more]

BLAST of CsaV3_7G029430.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LT27\|YCED1_ARATH	1.8e-80	59.00	Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic O...	[more]
sp\|A0A1D6HQ92\|YCED1_MAIZE	3.2e-53	50.22	Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic O...	[more]

BLAST of CsaV3_7G029430.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAY7\|A0A0A0KAY7_CUCSA	3.1e-183	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398180 PE=4 SV=1	[more]
tr\|A0A1S3BR50\|A0A1S3BR50_CUCME	5.6e-172	92.79	uncharacterized protein LOC103492797 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BSU8\|A0A1S3BSU8_CUCME	5.6e-172	92.79	uncharacterized protein LOC103492797 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1U8BDN8\|A0A1U8BDN8_NELNU	2.6e-92	57.14	uncharacterized protein LOC104609774 OS=Nelumbo nucifera OX=4432 GN=LOC104609774...	[more]
tr\|A0A2P6SJD1\|A0A2P6SJD1_ROSCH	1.7e-91	56.88	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0363071 PE=4...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003772	YceD

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G029430	CsaV3_7G029430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G029430.1.exon1	CsaV3_7G029430.1.exon1	exon
CsaV3_7G029430.1.exon2	CsaV3_7G029430.1.exon2	exon
CsaV3_7G029430.1.exon3	CsaV3_7G029430.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G029430.1.cds2	CsaV3_7G029430.1.cds2	CDS
CsaV3_7G029430.1.cds3	CsaV3_7G029430.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G029430.1	CsaV3_7G029430.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	DUF177	coord: 170..312 e-value: 2.4E-26 score: 92.1
None	No IPR available	PANTHER	PTHR34374	FAMILY NOT NAMED	coord: 58..317