CsaV3_7G028770.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G028770.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 18210896 .. 18211237 (-)
Sequence length	342

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCAATAATCAAATATTTAGTTTCCATAGCACTTGTAGCTACCCTTCTGTTGCTCTCCAAACCTGTATCGACTTTTGTCGTTGATCACGAGGAGATTTCTAATTCTAATAACATAATGCTTCTACGAAAGTCCCTCCAAGTGACAGATGGTCATCAAATTGCGAATGGATATCAAAACTCTCTTAAAGACGAAGATACCAAAAAAGATGAGCATAAAGAACCACCAAAGAAAGCTCATTGTCCAAATAAAAAATCGCTAGCCAATCGAGGTGGAACGATGCTATTTGGGGTTGGATCTTTACTTTGTTTTAGTATTGTTTATGGTCTATTTATTTGA

mRNA sequence

ATGGGGGCAATAATCAAATATTTAGTTTCCATAGCACTTGTAGCTACCCTTCTGTTGCTCTCCAAACCTGTATCGACTTTTGTCGTTGATCACGAGGAGATTTCTAATTCTAATAACATAATGCTTCTACGAAAGTCCCTCCAAGTGACAGATGGTCATCAAATTGCGAATGGATATCAAAACTCTCTTAAAGACGAAGATACCAAAAAAGATGAGCATAAAGAACCACCAAAGAAAGCTCATTGTCCAAATAAAAAATCGCTAGCCAATCGAGGTGGAACGATGCTATTTGGGGTTGGATCTTTACTTTGTTTTAGTATTGTTTATGGTCTATTTATTTGA

Coding sequence (CDS)

ATGGGGGCAATAATCAAATATTTAGTTTCCATAGCACTTGTAGCTACCCTTCTGTTGCTCTCCAAACCTGTATCGACTTTTGTCGTTGATCACGAGGAGATTTCTAATTCTAATAACATAATGCTTCTACGAAAGTCCCTCCAAGTGACAGATGGTCATCAAATTGCGAATGGATATCAAAACTCTCTTAAAGACGAAGATACCAAAAAAGATGAGCATAAAGAACCACCAAAGAAAGCTCATTGTCCAAATAAAAAATCGCTAGCCAATCGAGGTGGAACGATGCTATTTGGGGTTGGATCTTTACTTTGTTTTAGTATTGTTTATGGTCTATTTATTTGA

Protein sequence

MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHQIANGYQNSLKDEDTKKDEHKEPPKKAHCPNKKSLANRGGTMLFGVGSLLCFSIVYGLFI

Homology

[Close]

BLAST of CsaV3_7G028770.1 vs. NCBI nr
Match: KGN44885.1 (hypothetical protein Csa_7G394050 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX 60
           MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLLCFSIVYGLFI 114
           XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLLCFSIVYGLFI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLLCFSIVYGLFI 113

[Close]

BLAST of CsaV3_7G028770.1 vs. NCBI nr
Match: KGN44883.1 (hypothetical protein Csa_7G394030 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 3.8e-10
Identity = 46/103 (44.66%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX 60
           MGAIIK  V +A+V  LLLLSKP+ST  VDH+EISNSNN +L R  +Q T+ H       
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLL 104
                                      LANR GTMLFGVG L+
Sbjct: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLV 103

[Close]

BLAST of CsaV3_7G028770.1 vs. TrEMBL
Match: tr|A0A0A0K580|A0A0A0K580_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394050 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.3e-29
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX 60
           MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLLCFSIVYGLFI 114
           XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLLCFSIVYGLFI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLLCFSIVYGLFI 113

[Close]

BLAST of CsaV3_7G028770.1 vs. TrEMBL
Match: tr|A0A0A0K5W7|A0A0A0K5W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394030 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 46/103 (44.66%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHXXXXXXX 60
           MGAIIK  V +A+V  LLLLSKP+ST  VDH+EISNSNN +L R  +Q T+ H       
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLANRGGTMLFGVGSLL 104
                                      LANR GTMLFGVG L+
Sbjct: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLV 103

The following BLAST results are available for this feature:

BLAST of CsaV3_7G028770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44885.1	1.4e-28	100.00	hypothetical protein Csa_7G394050 [Cucumis sativus]	[more]
KGN44883.1	3.8e-10	44.66	hypothetical protein Csa_7G394030 [Cucumis sativus]	[more]

BLAST of CsaV3_7G028770.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G028770.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G028770.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K580\|A0A0A0K580_CUCSA	9.3e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394050 PE=4 SV=1	[more]
tr\|A0A0A0K5W7\|A0A0A0K5W7_CUCSA	2.5e-10	44.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394030 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G028770	CsaV3_7G028770	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G028770.1.cds1	CsaV3_7G028770.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G028770.1.exon1	CsaV3_7G028770.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G028770.1	CsaV3_7G028770.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..86