CsaV3_7G024160.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTGCCTTTCCAGCCACTTTCACTTGCATTCAACCATGTGAACTATTATGTGGATATGCCTGCTGTAAGTTAACTCAAGTTTGAAATAACCTATTTGGATTTGCTTTCTGGGTGTTTGCACTTAGAAAGCCATTCTAAATAGGCTGTAATTTTTTATTTTTTAATGAATGTCGTTTTGAAGGCACTGAAACTATATCAATGTTTTCCAATTAATTTAGGAAATGAAGATGCATGGGGTCGAGAAAGATCGTCTTCGACTTTTAGAAGATGTTAGCGGACCTTTTCGACCAGGGATATTAACAGCTCTTGTGGGTGTTAGTGGGGCTTGGAAAACTACTCTCTTGGATGTATTAGCTGGACGAAAGACCAGTGGTTATAAGGAAGTATATACATCTCTGCTTATGCCAAGAAGCAATCAACCTTTGCTAGAGTAAGTGGTTACTGTGAACAAACTGACATTCATTCGCCTCATGTCACTGTCTGTGAGTCGCTCCTATTTTCTACTTGGCTCCGCCTTTCCTCCAATGTTGATACCAAAACAAGAAAGGTATTTCCCACTAGAAACGCTTGCTGCTTTATGCTTCCAGTTAATGCAGAATATGATTGAAGTTTTATTGAATAGCTATTCTACATTGATGTAGATGTTTGTGGAAGAAGTTATGGAACTAATAAAACTAGATAAACTGAGAGATGCTTTAATGGGGCTACCAGGAATTGATGGTCTTTCAACAGAACAAAGGAAGAGATTGAAAATAGCAGTGGAGTTGGTTGCTAATCCGTCGACTATCTTCATGGACGAACCAACTTCTGGTCTTGATGCTAGATCTGCTGCCATTGTTATGCGTACCGTGCGAAATATCATAGTTGCATATGAATTCTCTTGGGAACTAATAAGGTGAGAAAAAAAAAACAAAAAGGAGAAAATTGATGATCTTTTTCACTCTAAGTAGAAATTGGTACTTAACCTTTCTGTTTAAGAATTTTTTTGAAATTTTCTCTCTTCTCTTCTCTTATTTTGCACACACAGACATGAAGCGAAGTTCTCCCTTTATCAAAGCTGGATTATTTCTTCACCTTCTTTTTTCAAGTTTTCATCTTTGGGTGTAA ATGTTTGTGGAAGAAGTTATGGAACTAATAAAACTAGATAAACTGAGAGATGCTTTAATGGGGCTACCAGGAATTGATGGTCTTTCAACAGAACAAAGGAAGAGATTGAAAATAGCAGTGGAGTTGGTTGCTAATCCGTCGACTATCTTCATGGACGAACCAACTTCTGGTCTTGATGCTAGATCTGCTGCCATTGTTATGCGTACCGTGCGAAATATCATAGTTGCATATGAATTCTCTTGGGAACTAATAAGACATGAAGCGAAGTTCTCCCTTTATCAAAGCTGGATTATTTCTTCACCTTCTTTTTTCAAGTTTTCATCTTTGGGTGTAA ATGTTTGTGGAAGAAGTTATGGAACTAATAAAACTAGATAAACTGAGAGATGCTTTAATGGGGCTACCAGGAATTGATGGTCTTTCAACAGAACAAAGGAAGAGATTGAAAATAGCAGTGGAGTTGGTTGCTAATCCGTCGACTATCTTCATGGACGAACCAACTTCTGGTCTTGATGCTAGATCTGCTGCCATTGTTATGCGTACCGTGCGAAATATCATAGTTGCATATGAATTCTCTTGGGAACTAATAAGACATGAAGCGAAGTTCTCCCTTTATCAAAGCTGGATTATTTCTTCACCTTCTTTTTTCAAGTTTTCATCTTTGGGTGTAA MFVEEVMELIKLDKLRDALMGLPGIDGLSTEQRKRLKIAVELVANPSTIFMDEPTSGLDARSAAIVMRTVRNIIVAYEFSWELIRHEAKFSLYQSWIISSPSFFKFSSLGVX
BLAST of CsaV3_7G024160.1 vs. NCBI nr
Match: XP_011652853.1 (PREDICTED: pleiotropic drug resistance protein 2-like [Cucumis sativus]) HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27 Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. NCBI nr
Match: XP_008442813.1 (PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Cucumis melo]) HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27 Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. NCBI nr
Match: XP_016899743.1 (PREDICTED: ABC transporter G family member 34-like isoform X2 [Cucumis melo]) HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27 Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. NCBI nr
Match: XP_008442815.1 (PREDICTED: ABC transporter G family member 34-like isoform X1 [Cucumis melo]) HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26 Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. NCBI nr
Match: XP_016899742.1 (PREDICTED: ABC transporter G family member 39-like isoform X2 [Cucumis melo]) HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26 Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TAIR10
Match: AT2G36380.1 (pleiotropic drug resistance 6) HSP 1 Score: 121.3 bits (303), Expect = 3.7e-28 Identity = 60/74 (81.08%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TAIR10
Match: AT1G66950.1 (pleiotropic drug resistance 11) HSP 1 Score: 120.2 bits (300), Expect = 8.3e-28 Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TAIR10
Match: AT1G59870.1 (ABC-2 and Plant PDR ABC-type transporter family protein) HSP 1 Score: 119.4 bits (298), Expect = 1.4e-27 Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TAIR10
Match: AT3G16340.1 (pleiotropic drug resistance 1) HSP 1 Score: 119.0 bits (297), Expect = 1.9e-27 Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TAIR10
Match: AT2G26910.1 (pleiotropic drug resistance 4) HSP 1 Score: 118.2 bits (295), Expect = 3.2e-27 Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. Swiss-Prot
Match: sp|A2WSH0|AB36G_ORYSI (ABC transporter G family member 36 OS=Oryza sativa subsp. indica OX=39946 GN=ABCG36 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27 Identity = 61/74 (82.43%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. Swiss-Prot
Match: sp|Q0JLC5|AB36G_ORYSJ (ABC transporter G family member 36 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG36 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27 Identity = 61/74 (82.43%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. Swiss-Prot
Match: sp|Q8GU92|AB35G_ORYSJ (ABC transporter G family member 35 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG35 PE=3 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27 Identity = 61/74 (82.43%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. Swiss-Prot
Match: sp|Q6YW62|AB44G_ORYSJ (ABC transporter G family member 44 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG44 PE=2 SV=2) HSP 1 Score: 122.5 bits (306), Expect = 3.0e-27 Identity = 60/74 (81.08%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. Swiss-Prot
Match: sp|Q5Z9S8|AB42G_ORYSJ (ABC transporter G family member 42 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG42 PE=2 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 5.2e-27 Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TrEMBL
Match: tr|A0A1S4DUU7|A0A1S4DUU7_CUCME (ABC transporter G family member 34-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486587 PE=3 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27 Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TrEMBL
Match: tr|A0A1S3B6M1|A0A1S3B6M1_CUCME (pleiotropic drug resistance protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486587 PE=3 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27 Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TrEMBL
Match: tr|A0A1S3B7D3|A0A1S3B7D3_CUCME (ABC transporter G family member 34-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486589 PE=3 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26 Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TrEMBL
Match: tr|A0A1S4DUS5|A0A1S4DUS5_CUCME (ABC transporter G family member 39-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486589 PE=3 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26 Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CsaV3_7G024160.1 vs. TrEMBL
Match: tr|I1I6P8|I1I6P8_BRADI (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=LOC100823692 PE=3 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 4.2e-26 Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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