CsaV3_7G024080.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G024080.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description40S ribosomal protein S4
Locationchr7 : 13093415 .. 13099382 (-)
Sequence length795
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAGTGATCTCATTTAGCTCTTTCTTCTCTTGTTTCATTTGTGCATTCTATTTTTCCTTCTATCCTTCTGGAGTTTTAGACTTCCGTATCTGTTTTGGGTCTCTTGTTCGTCTTCAGGTGGATTACTTTTTTATGTGGTTACTTCTTCATTTTGTTAATTTTCTGAGACAATTTTCTGGGCACAACGATGTGAAAGTTTTCACCAATGGCTTCGTTCTATTTAAGTATAAATTGATTTATGTGTCCTTGTATGGGACTGTATTCTACATGCAAGATGAGTATTGCCATTGGCACGGTTTTGTCCACTGTTATTTATTTTTCCTCATGATGTGCGGATTTCTGTGTATATGCTTGTGTTTTGTTGTTCTAAATAGACACATTTTTCTTTGAAATAAATGCCTATGGCGATGACAGGCAAGGGGACTGAAGAAGCATTTAAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAGCTTGGTGGTGCATTTGTGAGTCAAATTTGTTGTTTCATTTATTTTATTTTTTCTCTCGAGTTTATGCATTACGCTTATTTCTGACAGTTCTACCTCTCAAATCTCTTTGTAGGCCCCCAAACCTTCATCTGGACCTCACAAGTCGAGGGAATGCCTCCCTTTGATCCTTATATTGAGAAACCGACTCAAATATGCCCTCACGTACCGTGAGGTAATTGCAATATTAATGCAACGACATGTTTTGGTCGATGGGAAGGTTAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGGTACGTTATCTTGAACTTTGTAACCTTACCATTGTTTGAATTCCAATGTCTACTGACCCTTTTTTAGAGTGCCACTATAGGTGTTATTATAAGAGCATGCTAAATTGTTTTTTTTTTATTCTTGGAATTGACTGTTGATTTTATGAACTGAATTAGTGAAGTAATCACTCATCATTTTGAGATTGTTTTCCTTCGGTTATAGTGCCCCCTACGCTTTAGGCTTAGTGTTATACTTCATTGTTTTTTATGTTATTTATATTTAGTCTTTAGTATTAATTAATTTTAAGGCTTTAACAATCAATATTTTATTCATTTATTTATTTATTGCGTCTTGCTTCGCTCTGGTGACACCTCTTTGTTGCCTCTTGCCTAGAGGCAATGAAGTGACTTGTTGCCTTGAGGTGTGCCTTGTGGCTTGCGCTTTGAAAACACTGGTAACACTTTGAAAGGCCCAATTGCCTATCTTCAATTCATTGTAAGTGCCAGTAGGAAATCTAGCTTTGCGTAGATGAATTACAAGGTCCCCTTCTACAAAGTTAAGCACCCTCTGAGATTTTTCCTAAGCCAAGGGCCATTTTACTTAATTGATCTATCACAACCACCGCAACATCAAAACTTACTGTCTTTGGAACTCATCAAACAACTTCTGTACTTCTAGAGGAGGTTTACTATTGTCTCTTCTGCCTTTTCAACTATCACAAGGTCCAATATATCAACCTCCCTTTCGTTATCAAACATTTTTCCACTGATTGTGCTAAGCTAATGATTGTTGCGATCTTTCTTAGAACTAACTCTGTCATCATTTTTATTATTCAATGGGAGTAATACCACTTTCTCCCCATCCATTGAAATTCATAAGTATTCTCTCTTCTCTTGTGCAATGTTCGATTATGCAAGGTTCGAGTATTAAATTGCCAAGGTATTCCAAATAGAATGTGATGTACGTCCATATCTAACATATTGCAAACAATTCGGTCCATGTGTTTACTTCCAATTGAAAGAGTAACTAGGCAAATCTCATTTAGTTGAGCCTCTCCACCTTTTTTCACCCAACCAAAGAATTCTCTTCATCATCTCCATATGCTATTGTTTTTCTTTGTTTACATTCATTAGACAAATATCTTGTTTGGCTACAGTTAGAACACTTTCTCATTATGAGCCCGTTATTCAAATTTTGAGTTCTCTTATTCACTCGAATTTTGAAAGAATGGCCATATTTTGGTTGTTTTTTGCCTACAAAGTGTTCCAAGGATTTTTTCTTGCATTCTTCTTGGAGTGAACTTTGTTCAATTCGTCCATTCTTTTAGCACAAATAATTCCATCAACTAACAATTGAAAATGTCGTAGTTTTACCTTTTTTGATGTCCACCTACATGCCACCAATGAATCTTGCAATTAAGTGTTCCTCATTCTCCACCTAATTTGTTCTTGCTTCCAATCGGTGGAATTCTTCAATGTAATTAGCTATGGATCATAGGCCATGTCCACAATTTTAATATTGATTATAGTGTTTGTTCATAACTGGGTGGGTGTAACGCTCCTTCATCAAACACTTCATCTTTTTCCAAAAACGGATTGGTTTCTTGCCTCTACTATTGACCTCGAGTTGTTCCCACCAAGTTGATGCACTTGGTCTTAGTTTTAAGGCCACCGGTTGCCCCTTTTTATGCTCAAAGTTATTCATATATTATAATATGCAAAGAAATTATCGGTGTTCTTTATCCAAGAATACTTCAATATCACATTTCCCACTATGAAGTGGCAAATCTATCTTCATCTTGTAATCATAATGATCTTCTCTTGCCACATGTTGATTGTCTTGTCTTCTATAATTAACAAAGTCATTTTCTTGATCTTCCTCACTTGAAGAATCTCATTCTTGAAATTGTTGGTATCATTCTTGAAAATTTGGTCGAGGTTCTTGGCGTTCTTGGAACTGGAACTGTCTTTGGCGAAAATGACTACTTTTTTACCTCTTTCTTCAATGGTTTCTTGCTGATTTTGAACATGCCTCAGCTGCCCATGCCACACCTACCTTTCTTCCTCCATTCTTGAATTGGTTCTTTTGGCATTATTGGGGTGTTTGGCTCGTGGCTTTGGAATTAGGGGGTTTGGCATTTGAAGCCAAACCCATGTTTGTTCCCTTGGAATAAAATTCCTGGGATTAAGGGGTTTGGAATATGTTTTTTTTATAATTATTTAATGTCATATGTTTTAGAAAAAATTTCACTTCAACGTCTTATCAATGATCGTTGGCAACAATTGTTAGCCAACTTCATGATCAACCACGATGATCGATCATGATCGATCGACGGTCACAACAACCGATTGTTTTACTCGTTGGCTCCAGATTGTCATTGTAGATCGTCCTGATCGTTGATTATCAATGAACATCTTGATTGACGACAACCAATCGTTATCATTAATTATCGATCTCATGCCTATTAACAAACGATCTTATTGATGGTAAATGGTCAATAGCCATAACCCTTGACGATCGATTGCCATGATGGTCGATGACCAACCAATTGTCTTAAAATTGACAACTGTTGATCAATGACCGTCTTCACCAAGGCTTCCTACACTCTTTCTCATGGGATTGAATAGTAAACACTATTCAAGCCCATGGATTACTTTTTTTTCTAATTCAATCTAGAAAATCATCAACTACAAACACCACCCTAGTGACCATTGTCAGTCGACCACTAGGTGTCATTTCTGACAAACTCGGTTGACGAACTTTCGACCACCACTTTTCCAACTTTTGCAAACCATGAAAAATTAATAAAAATAAATTTTTGAAAAACTTTTTTTTTCTGAGTCATTCCATATATGTCTTTGATTTAATCACAATAATATTATATAAAATACTTATTTTTTCATTCTTCTATTTTCTTTTCTTATGGAGTTTTTTTATAACTATTATTATTAGATCATTTTTTTTAATGATCTCTTTTCTATTTTTTATTTAAAATTAATCTTTCCTTCATTTTAGGAGATTTTGTTTATTTTGTTATATTTTTTCATGAAAATTGATGACCTATCTATTGTGATCTCGAGTATAAATTAAATATTAGTATATTGATAATATAGTGAAAATTTTAAATAAATTAAATATTTTTAGTTTAATAACATTTTTCATTTTTTTCATTAGTCAATTTAACTAAAAGACTCCAGACTCACTTGAATTGACTTATTTTTATTTAGACCTCTTTTGATGAAGTATTTTTAGATACATTACATGTGTGTCATAAAAAGAAAACCATAACTATAGTTAAACATAACTCTATTTGATTTTCACTTTTGAATGATCCTTTTGGTTATGCTTATTTTATTATTTTGAAACATATTAGACCATTTTTAATGTTGCTTAACTAGAACTTTTGTAAACTCCATCTGATTACATAATTTGTTATATTTTGTGAATGGTTTGTAATATTCCTACTTAGATCATTCATGTTAATGCATGTGTAATCAAAATTATTGTTATCTAATTTTGAAATTTTTTGTTTTTACATTATTGTTATTAAAATCAATAGAGTCAATAAATTAAATTAGAGGTACAAAATATAAAAAAAATCAATTAAAAATTTGATACAAAATAAATTTAGGACGTAAAATTAATAAAAATAACTAAACAAATTAACTAAACCTAGGAATTCAAAATCAGCACCCCAAACACCATCATCAGAAAATTCAGATTTCCAAATACTGGCATTTATAATACCTAGGCATTAGAGTCCCATCAAATAAGTTCACAGGCATTTACTTTTCAGACATTTGATTTCGAACCTGCGTGTCAAACATCTGGATGATTCCCAGCAATTGGGTTTGCTACTTGCAAGCTTACACTTGTTCTGGGATAGAGGACAAGTGTTTTTTTTGCCTCTTGGTTTCACGTGCATAGATCCCCAGCAATTGGGTTTGCTACCCTTTTTCTGGTCATAGTCTGAGGGTTCTTGGAGCTCTATTACCAATTGGTCTAAAACCAAGAGTACTTCTGAATGAATAATATTCTCCAGCTCTCAATGAGCGGAGATGGCCTTTATTTATCGGGGAAAAGTGGTTTCAGGTTTGTAATTAATGCTAACAATTCAAAATAACAGACCAACTTATTTTATCAACTATCTGACTCACTCACTCTTAGCTAGTTTACAAAAGCACCTCATGGTAGAGGAAGGCTATTACTAATGGCTGGGGGCTTTAGTGTTAATTCTACCATCATTTTGTTTTAGCATTTTCTTCCCGTTCTTCGTGGAAGATGCAATTCTGTTTATTGCTTTTGTATTTACATTTTTAAGCACAACACTAATATTTTTCTGTGCCTTCTCTTCAGACGTTGTGTCAATTCCCAAAACAAGTGAGAATTTCCGGCTTCTTTATGACACAAAAGGCCGATTTCGTTTACACTCAGTTAGGGATGAGGAGGCCAAGGTTAGCTACTGTCCTTTTGATGTTGAAATTTGACCTATTTGTTACAATCTTGTTGTATAAAGTATTCTAGTTTCAAAGTAAAATAGATGCAATTACAAAGTTTTTGGCATCAATTGTTCATGAATCATAAGGGAGAGATTTAGCTCTTTCTCCAGTTGGGGAGACATTCTACCTTTTCAAATTATTATCATGTGACGTTAGTGTAGGGAAGTATTTCAATATCTTATAACCCTCTGGAGTAGTAACAGGCTGGGTGCTGGACACCGTTTGTGGTTCATGATATAATTGGACGATTTAAGCTTGACTTTCATATTACTTTTTGCAGTATAAGCTGTGCAAAGTTCGCTCCGTACAGTTTGGGCAAAAGGGCATCCCTTATCTGAACACCTATGATGGACGCACAATCCGTTATCCTGACCCTTTAATCAAGGCGAATGACACCATCAAGCTGGACCTCGAGTCCAACAAGATTGCAGATTTCATCAAGTTCGATGTAGGAAATGTTGTGATGGTTACCGGTGGAAGAAACAGAGGCAGGGTTGGAGTGATAAAGAATAGGGAGAAGCATAAGGGAAGCTTTGAAACAATCCACATTCAGGATGCAACTGGGCACGAATTTGCTACTCGGCTGGGCAATGTGTTCACAGTTGGCAAGGGGACTAAGCCATGGGTGTCCCTACCTAAGGGCAAGGGTATTAAATTATCCATCATCGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCCGCAGTTACTGCTTGA

mRNA sequence

ATGGCAAGGGGACTGAAGAAGCATTTAAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAGCTTGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCACAAGTCGAGGGAATGCCTCCCTTTGATCCTTATATTGAGAAACCGACTCAAATATGCCCTCACGTACCGTGAGGTAATTGCAATATTAATGCAACGACATGTTTTGGTCGATGGGAAGGTTAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGACGTTGTGTCAATTCCCAAAACAAGTGAGAATTTCCGGCTTCTTTATGACACAAAAGGCCGATTTCGTTTACACTCAGTTAGGGATGAGGAGGCCAAGTATAAGCTGTGCAAAGTTCGCTCCGTACAGTTTGGGCAAAAGGGCATCCCTTATCTGAACACCTATGATGGACGCACAATCCGTTATCCTGACCCTTTAATCAAGGCGAATGACACCATCAAGCTGGACCTCGAGTCCAACAAGATTGCAGATTTCATCAAGTTCGATGTAGGAAATGTTGTGATGGTTACCGGTGGAAGAAACAGAGGCAGGGTTGGAGTGATAAAGAATAGGGAGAAGCATAAGGGAAGCTTTGAAACAATCCACATTCAGGATGCAACTGGGCACGAATTTGCTACTCGGCTGGGCAATGTGTTCACAGTTGGCAAGGGGACTAAGCCATGGGTGTCCCTACCTAAGGGCAAGGGTATTAAATTATCCATCATCGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCCGCAGTTACTGCTTGA

Coding sequence (CDS)

ATGGCAAGGGGACTGAAGAAGCATTTAAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAGCTTGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCACAAGTCGAGGGAATGCCTCCCTTTGATCCTTATATTGAGAAACCGACTCAAATATGCCCTCACGTACCGTGAGGTAATTGCAATATTAATGCAACGACATGTTTTGGTCGATGGGAAGGTTAGGACAGACAAGACTTTCCCTGCTGGTTTCATGGACGTTGTGTCAATTCCCAAAACAAGTGAGAATTTCCGGCTTCTTTATGACACAAAAGGCCGATTTCGTTTACACTCAGTTAGGGATGAGGAGGCCAAGTATAAGCTGTGCAAAGTTCGCTCCGTACAGTTTGGGCAAAAGGGCATCCCTTATCTGAACACCTATGATGGACGCACAATCCGTTATCCTGACCCTTTAATCAAGGCGAATGACACCATCAAGCTGGACCTCGAGTCCAACAAGATTGCAGATTTCATCAAGTTCGATGTAGGAAATGTTGTGATGGTTACCGGTGGAAGAAACAGAGGCAGGGTTGGAGTGATAAAGAATAGGGAGAAGCATAAGGGAAGCTTTGAAACAATCCACATTCAGGATGCAACTGGGCACGAATTTGCTACTCGGCTGGGCAATGTGTTCACAGTTGGCAAGGGGACTAAGCCATGGGTGTCCCTACCTAAGGGCAAGGGTATTAAATTATCCATCATCGAAGAAGCCAGGAAGAGGCTGGCAAGCCAAGCCGCAGTTACTGCTTGA

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPKGKGIKLSIIEEARKRLASQAAVTA
Homology
[Close]
BLAST of CsaV3_7G024080.1 vs. NCBI nr
Match: XP_004150397.1 (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus] >KGN44413.1 hypothetical protein Csa_7G282410 [Cucumis sativus])

HSP 1 Score: 532.7 bits (1371), Expect = 7.0e-148
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. NCBI nr
Match: XP_008461463.1 (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 531.2 bits (1367), Expect = 2.0e-147
Identity = 262/264 (99.24%), Postives = 264/264 (100.00%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVS+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. NCBI nr
Match: XP_022132117.1 (40S ribosomal protein S4-3 [Momordica charantia])

HSP 1 Score: 528.9 bits (1361), Expect = 1.0e-146
Identity = 260/264 (98.48%), Postives = 264/264 (100.00%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. NCBI nr
Match: XP_008461503.1 (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 528.1 bits (1359), Expect = 1.7e-146
Identity = 259/264 (98.11%), Postives = 264/264 (100.00%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMD++SIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. NCBI nr
Match: XP_004150395.2 (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus] >KGN44410.1 hypothetical protein Csa_7G281390 [Cucumis sativus])

HSP 1 Score: 527.3 bits (1357), Expect = 3.0e-146
Identity = 260/264 (98.48%), Postives = 262/264 (99.24%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQA VTA
Sbjct: 241 GKGIKLSIIEEARKRLASQATVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. TAIR10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 505.4 bits (1300), Expect = 2.2e-143
Identity = 241/261 (92.34%), Postives = 257/261 (98.47%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE+NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of CsaV3_7G024080.1 vs. TAIR10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 505.0 bits (1299), Expect = 2.8e-143
Identity = 241/261 (92.34%), Postives = 256/261 (98.08%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of CsaV3_7G024080.1 vs. TAIR10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 502.7 bits (1293), Expect = 1.4e-142
Identity = 239/261 (91.57%), Postives = 256/261 (98.08%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]
BLAST of CsaV3_7G024080.1 vs. Swiss-Prot
Match: sp|Q8VYK6|RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 505.4 bits (1300), Expect = 3.9e-142
Identity = 241/261 (92.34%), Postives = 257/261 (98.47%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE+NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of CsaV3_7G024080.1 vs. Swiss-Prot
Match: sp|P49204|RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 505.0 bits (1299), Expect = 5.1e-142
Identity = 241/261 (92.34%), Postives = 256/261 (98.08%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of CsaV3_7G024080.1 vs. Swiss-Prot
Match: sp|P46300|RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 8.7e-142
Identity = 242/264 (91.67%), Postives = 259/264 (98.11%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQR V+VDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSATPA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. Swiss-Prot
Match: sp|Q93VH9|RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 2.5e-141
Identity = 239/261 (91.57%), Postives = 256/261 (98.08%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]
BLAST of CsaV3_7G024080.1 vs. Swiss-Prot
Match: sp|P46299|RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 1.1e-139
Identity = 241/261 (92.34%), Postives = 253/261 (96.93%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHV+VDGKVRTDKT+PAGFMDVVSIPKT+E+FRLLYDTKGRF LH++  +E K
Sbjct: 61  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDA GHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
            KGIKLSIIEEARKRLA+Q A
Sbjct: 241 RKGIKLSIIEEARKRLAAQNA 261

[Close]
BLAST of CsaV3_7G024080.1 vs. TrEMBL
Match: tr|A0A0A0K4K7|A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 4.6e-148
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. TrEMBL
Match: tr|A0A1S3CEH5|A0A1S3CEH5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 1.4e-147
Identity = 262/264 (99.24%), Postives = 264/264 (100.00%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVS+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. TrEMBL
Match: tr|A0A1S3CEL9|A0A1S3CEL9_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 1.1e-146
Identity = 259/264 (98.11%), Postives = 264/264 (100.00%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMD++SIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. TrEMBL
Match: tr|A0A0A0K3Y8|A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 2.0e-146
Identity = 260/264 (98.48%), Postives = 262/264 (99.24%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQA VTA
Sbjct: 241 GKGIKLSIIEEARKRLASQATVTA 264

[Close]
BLAST of CsaV3_7G024080.1 vs. TrEMBL
Match: tr|A0A1S3BZK5|A0A1S3BZK5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 5.7e-146
Identity = 258/264 (97.73%), Postives = 263/264 (99.62%), Query Frame = 0 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120
           VIAILMQRHVLVD KVRTDKT+PAGFMDVVSIPKTSENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLTIIEEARKRLASQAAVTA 264

The following BLAST results are available for this feature:
BLAST of CsaV3_7G024080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150397.17.0e-148100.00PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus] >KGN44413.1 hypothetical... [more]
XP_008461463.12.0e-14799.24PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo][more]
XP_022132117.11.0e-14698.4840S ribosomal protein S4-3 [Momordica charantia][more]
XP_008461503.11.7e-14698.11PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo][more]
XP_004150395.23.0e-14698.48PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus] >KGN44410.1 hypothe... [more]
BLAST of CsaV3_7G024080.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58420.12.2e-14392.34Ribosomal protein S4 (RPS4A) family protein[more]
AT5G07090.12.8e-14392.34Ribosomal protein S4 (RPS4A) family protein[more]
AT2G17360.11.4e-14291.57Ribosomal protein S4 (RPS4A) family protein[more]
BLAST of CsaV3_7G024080.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VYK6|RS43_ARATH3.9e-14292.3440S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2[more]
sp|P49204|RS42_ARATH5.1e-14292.3440S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4[more]
sp|P46300|RS4_SOLTU8.7e-14291.6740S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1[more]
sp|Q93VH9|RS41_ARATH2.5e-14191.5740S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1[more]
sp|P46299|RS4_GOSHI1.1e-13992.3440S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1[more]
BLAST of CsaV3_7G024080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K4K7|A0A0A0K4K7_CUCSA4.6e-148100.0040S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1[more]
tr|A0A1S3CEH5|A0A1S3CEH5_CUCME1.4e-14799.2440S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1[more]
tr|A0A1S3CEL9|A0A1S3CEL9_CUCME1.1e-14698.1140S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1[more]
tr|A0A0A0K3Y8|A0A0A0K3Y8_CUCSA2.0e-14698.4840S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G281390 PE=3 SV=1[more]
tr|A0A1S3BZK5|A0A1S3BZK5_CUCME5.7e-14697.7340S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018199Ribosomal_S4e_N_CS
IPR038237Ribosomal_S4e_central_sf
IPR03227740S_S4_C
IPR013845Ribosomal_S4e_central_region
IPR013843Ribosomal_S4e_N
IPR000876Ribosomal_S4e
IPR014722Rib_L2_dom2
IPR005824KOW
IPR002942S4_RNA-bd
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G024080CsaV3_7G024080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G024080.1CsaV3_7G024080.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G024080.1.cds5CsaV3_7G024080.1.cds5CDS
CsaV3_7G024080.1.cds4CsaV3_7G024080.1.cds4CDS
CsaV3_7G024080.1.cds3CsaV3_7G024080.1.cds3CDS
CsaV3_7G024080.1.cds2CsaV3_7G024080.1.cds2CDS
CsaV3_7G024080.1.cds1CsaV3_7G024080.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G024080.1.exon5CsaV3_7G024080.1.exon5exon
CsaV3_7G024080.1.exon4CsaV3_7G024080.1.exon4exon
CsaV3_7G024080.1.exon3CsaV3_7G024080.1.exon3exon
CsaV3_7G024080.1.exon2CsaV3_7G024080.1.exon2exon
CsaV3_7G024080.1.exon1CsaV3_7G024080.1.exon1exon


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 42..106
e-value: 2.7E-4
score: 30.3
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 47..90
e-value: 8.0E-7
score: 28.6
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 42..104
score: 8.993
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 51..112
e-value: 5.73819E-6
score: 41.8514
IPR005824KOWSMARTSM00739kow_9coord: 174..201
e-value: 7.7E-4
score: 28.8
IPR005824KOWPFAMPF00467KOWcoord: 177..210
e-value: 1.5E-6
score: 27.9
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 175..245
e-value: 1.5E-37
score: 129.2
IPR000876Ribosomal protein S4ePIRSFPIRSF002116RPS4a_RPS4ecoord: 1..241
e-value: 2.6E-97
score: 322.7
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 1..261
IPR000876Ribosomal protein S4eHAMAPMF_00485Ribosomal_S4ecoord: 7..238
score: 36.503
IPR013843Ribosomal protein S4e, N-terminalPFAMPF08071RS4NTcoord: 3..39
e-value: 1.8E-19
score: 69.5
IPR013845Ribosomal protein S4e, central regionPFAMPF00900Ribosomal_S4ecoord: 95..169
e-value: 7.9E-36
score: 121.7
IPR013845Ribosomal protein S4e, central regionPRODOMPD002667coord: 87..176
e-value: 5.0E-46
score: 465.0
IPR03227740S ribosomal protein S4, C-terminal domainPFAMPF1612140S_S4_Ccoord: 212..258
e-value: 7.1E-26
score: 89.5
NoneNo IPR availableGENE3DG3DSA:3.10.290.40coord: 1..117
e-value: 5.2E-60
score: 202.5
NoneNo IPR availablePANTHERPTHR11581:SF11SUBFAMILY NOT NAMEDcoord: 1..261
NoneNo IPR availableCDDcd06087KOW_RPS4coord: 175..229
e-value: 2.05533E-29
score: 105.675
IPR038237Ribosomal protein S4e, central domain superfamilyGENE3DG3DSA:2.40.50.740coord: 122..172
e-value: 7.1E-31
score: 107.8
IPR018199Ribosomal protein S4e, N-terminal, conserved sitePROSITEPS00528RIBOSOMAL_S4Ecoord: 8..22