CsaV3_7G022290.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G022290.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	major latex allergen Hev b 5-like
Location	chr7 : 11188915 .. 11190034 (-)
Sequence length	366

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAATGTCATTAACCATCTTCCAAAAAAAGAACAACGTTATGTGAGTATAAAAAACCTTTGTATGACTTCTAAACCTTTGCCCATCCACACCAATTACAATCTCAAAATCTCTTCTTTCTCTTCTTCCAAATCTTTCTCTCCTTAACGGGAGGGAAAGAAAACTTAATCGGTTGTTTTTCATACATATAGATAATGGGTGCCTGCGCTACCAAGCCTAAAGTCAAGGCCGATGATTTGGCTGCAATCCCTGCACCCGAACCTATTGATCATGACATTGTGAAGAACAACGAGGAAGTCAAATTCGTGGAAGAGGAAAAGAAGAGTGATCAGACCGATGAAAAAAAGAAGGAAAACAACGAGAAAGTTGTCGTCAAGGAGAAGAAGCCCCCGTCTCTCGCCTCCTTGCTCGTTGAGGTATACTTTATCTAATTTAATAGATTGAATATTTGAAGGCTTTCAAACAAAGTAGGAGATCTTGTTTTGAAAATTGTTTATGTAATTTATTTATTATGATTAGAAACCCACAAACTATGGAAGATAACTTGGGAGTAAATAAAGAACAAAGGTAAGTGTAACTTAGTGATTAGATATTTAGGTAAACGATACAAATATAGTTTGAGATGCTATAATAAATAAACATAGAATAATCATCTATGAAAATATAATTCCACTTGATAGAATATCTGGGATGTAACATTGCATATTGCATATTTGAAAGTAATTTTCAAATTATCAAAATCTAAAACATGCATTTAGGGTTCTTTTTATGAGTTTTTGAGTTCTTGATAAGGAAATTATTAAGCATGTGAATAAAATAGAAAAAAAATTGCACCTTCTTTTATAGAAGGAAGCCGCTCCGGCGGTAGAAGTTTCCGGCATACCGAAGGCCGAGGAAAAGCCGAAGGCGAAAGAAGTGGCAGCGCCAACTATTGAAGCAGAACTGAAGAAAAGCGAAGAGAAACCAAAAGAAAAGGATGAGAAAAGCGTATGATGATTTGAAAGAAGAAAATAAGGCGAAGCGCTCTTTATTTGAAATATAATTTTCTCTTCTGAAAAGCTATTCATTATTCAGTATGTTGTGCAAAGATTGGTAATCATTTCTAAGGTGTGGAGGGGT

mRNA sequence

ATGGGTGCCTGCGCTACCAAGCCTAAAGTCAAGGCCGATGATTTGGCTGCAATCCCTGCACCCGAACCTATTGATCATGACATTGTGAAGAACAACGAGGAAGTCAAATTCGTGGAAGAGGAAAAGAAGAGTGATCAGACCGATGAAAAAAAGAAGGAAAACAACGAGAAAGTTGTCGTCAAGGAGAAGAAGCCCCCGTCTCTCGCCTCCTTGCTCGTTGAGGAAGCCGCTCCGGCGGTAGAAGTTTCCGGCATACCGAAGGCCGAGGAAAAGCCGAAGGCGAAAGAAGTGGCAGCGCCAACTATTGAAGCAGAACTGAAGAAAAGCGAAGAGAAACCAAAAGAAAAGGATGAGAAAAGCGTATGA

Coding sequence (CDS)

ATGGGTGCCTGCGCTACCAAGCCTAAAGTCAAGGCCGATGATTTGGCTGCAATCCCTGCACCCGAACCTATTGATCATGACATTGTGAAGAACAACGAGGAAGTCAAATTCGTGGAAGAGGAAAAGAAGAGTGATCAGACCGATGAAAAAAAGAAGGAAAACAACGAGAAAGTTGTCGTCAAGGAGAAGAAGCCCCCGTCTCTCGCCTCCTTGCTCGTTGAGGAAGCCGCTCCGGCGGTAGAAGTTTCCGGCATACCGAAGGCCGAGGAAAAGCCGAAGGCGAAAGAAGTGGCAGCGCCAACTATTGAAGCAGAACTGAAGAAAAGCGAAGAGAAACCAAAAGAAAAGGATGAGAAAAGCGTATGA

Protein sequence

MGACATKPKVKADDLAAIPAPEPIDHDIVKNNEEVKFVEEEKKSDQTDEKKKENNEKVVVKEKKPPSLASLLVEEAAPAVEVSGIPKAEEKPKAKEVAAPTIEAELKKSEEKPKEKDEKSV

Homology

[Close]

BLAST of CsaV3_7G022290.1 vs. NCBI nr
Match: XP_008447176.1 (PREDICTED: major latex allergen Hev b 5-like [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 98/123 (79.67%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MGACATKPKVKADDLAAIPAPEPIDHDIVKN--XXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGACATKPKVK DDLAAIPAPEPIDHDIVKN  XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGACATKPKVKTDDLAAIPAPEPIDHDIVKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXPAVEVSGIPKAEEKPKAKEVAAPTIEXXXXXXXXXXXXXXE 120
           XXXXXXX XXXXXXXXXXXP VEVS IPKA+EKPK +EV APT E              E
Sbjct: 61  XXXXXXXLXXXXXXXXXXXPVVEVSCIPKADEKPKVEEVVAPTNEAEAKESEEKPKEKNE 120

Query: 121 KSV 122
           KSV
Sbjct: 121 KSV 123

[Close]

BLAST of CsaV3_7G022290.1 vs. NCBI nr
Match: XP_004139808.1 (PREDICTED: microtubule-associated protein 1B-like [Cucumis sativus] >KGN44220.1 hypothetical protein Csa_7G230950 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGACATKPKVKADDLAAIPAPEPIDHDIVKN-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MGACATKPKVKADDLAAIPAPEPIDHDIVKN XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MGACATKPKVKADDLAAIPAPEPIDHDIVKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXXXXPAVEVSGIPKAEEKPKA 95
          XXXXXXXXXXXXXXX   PAVEVSGIPKAEEKPKA
Sbjct: 61 XXXXXXXXXXXXXXXEAAPAVEVSGIPKAEEKPKA 95

[Close]

BLAST of CsaV3_7G022290.1 vs. TrEMBL
Match: tr|A0A1S3BGT9|A0A1S3BGT9_CUCME (major latex allergen Hev b 5-like OS=Cucumis melo OX=3656 GN=LOC103489688 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 98/123 (79.67%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MGACATKPKVKADDLAAIPAPEPIDHDIVKN--XXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGACATKPKVK DDLAAIPAPEPIDHDIVKN  XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGACATKPKVKTDDLAAIPAPEPIDHDIVKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXPAVEVSGIPKAEEKPKAKEVAAPTIEXXXXXXXXXXXXXXE 120
           XXXXXXX XXXXXXXXXXXP VEVS IPKA+EKPK +EV APT E              E
Sbjct: 61  XXXXXXXLXXXXXXXXXXXPVVEVSCIPKADEKPKVEEVVAPTNEAEAKESEEKPKEKNE 120

Query: 121 KSV 122
           KSV
Sbjct: 121 KSV 123

[Close]

BLAST of CsaV3_7G022290.1 vs. TrEMBL
Match: tr|A0A0A0K3E6|A0A0A0K3E6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230950 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.2e-11
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGACATKPKVKADDLAAIPAPEPIDHDIVKN-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MGACATKPKVKADDLAAIPAPEPIDHDIVKN XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MGACATKPKVKADDLAAIPAPEPIDHDIVKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXXXXPAVEVSGIPKAEEKPKA 95
          XXXXXXXXXXXXXXX   PAVEVSGIPKAEEKPKA
Sbjct: 61 XXXXXXXXXXXXXXXEAAPAVEVSGIPKAEEKPKA 95

The following BLAST results are available for this feature:

BLAST of CsaV3_7G022290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447176.1	1.7e-11	79.67	PREDICTED: major latex allergen Hev b 5-like [Cucumis melo]	[more]
XP_004139808.1	1.1e-10	95.79	PREDICTED: microtubule-associated protein 1B-like [Cucumis sativus] >KGN44220.1 ...	[more]

BLAST of CsaV3_7G022290.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G022290.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G022290.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BGT9\|A0A1S3BGT9_CUCME	1.1e-11	79.67	major latex allergen Hev b 5-like OS=Cucumis melo OX=3656 GN=LOC103489688 PE=4 S...	[more]
tr\|A0A0A0K3E6\|A0A0A0K3E6_CUCSA	7.2e-11	95.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230950 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G022290	CsaV3_7G022290	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G022290.1.cds2	CsaV3_7G022290.1.cds2	CDS
CsaV3_7G022290.1.cds1	CsaV3_7G022290.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G022290.1.exon2	CsaV3_7G022290.1.exon2	exon
CsaV3_7G022290.1.exon1	CsaV3_7G022290.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G022290.1	CsaV3_7G022290.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..121