CsaV3_7G012700.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G012700.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	cleavage and polyadenylation specificity factor subunit 6
Location	chr7 : 6682448 .. 6687382 (+)
Sequence length	2220

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAGATAAAATAAAAAATGATAAAAAGGTCGGGTTGAAGAGGGAGAAAAAGAAATGTAGTCTAAATCTCTAAATAAACTTATTCGTAGAAATACAATTAAAAAATAAGTTAAAAGAGATCAAGAAACCAAATTGAGAAGATGATGAGGAAGAAATTGGCAGGATTTCCACGCGCAATTCGAGATTAGGGTTTCTTCCTATTTTCTTCTGCAGTTCTTCCCTAATTGGGGCTTTCATCTCTGACTTTTAACTTCTCTTCCTTACTTTGAAATTTGTTTCCTTAGTGCTTTGATCCACTTTCTCATGCTGCCTGCCTTCTATTTCTGAATTTGAATGAATATTTAGAGCAGGTCGTTGAAGAAGGCATATATGGACGAAGGAGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTCCATCGGAACGAGGCCATTTCGGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAGCGATGATTTGGGATTCAAGAGGGAGGAGGAACCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGTGGAGGTGCGACTGAAGTTACTGGTTTAGGAGATGCCGGTGGGCGTACTGTTTCGGAGAGAGTAACAGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGGCACCGGAGTTGGGATCAGAGTTGAATTAGGGCAAGGGAGCAAAGCCATCGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTGGGCATCAGGCTCCGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCCACAGCCACAGCCGCAGCCGCAGCCACAGCCACAGCCGCAGCACCATCACCAACCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTTAATGTCAATGGGGTTGGTGGAAACGGGTTCGCTAATATCGGGAGTGCAGGGGGAGGTGGCGGTGGAACAATTTTGTTTGTTGGGGATTTACATTGGTGGACTACAGATGCGGAGCTTGAGGTGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATTCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGTCCCTGTGTAGTTGCATATGCATCACCGTTTAGTGTTAAGAAAATGGGAGAAGCCCAAGTTAGCAGGAACCAACAGATAGCCCAAGCTACTAATCCTCAAGCAAGGAGAGCGCCTAATGAGGCTGTAGGTAAAATTGGTGGAAATAGTATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAACTGGGGAAGGAGTAATGCTCATGGAATGGGTGGTCGAGGACCAGCTGGCCCAATGAGGGGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTATTGCATCCCCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGTACATATGGTGGTTTTCCTGGAGCCCCAGCTCCCCCTTTCTCTGGAATTTTGTCATCCTTTCCTCCTGTCGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCAAGGTGGAGGGAGAGCAGGTGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCATTATGGTGAAGGCAGTCATGAAAGAGGGCCATGGGCAAATTCTGCGAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTCGGTTATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGACCTGACCATGACTGGCCAGATAGAAGGCCTCGTGAAGATAGAGATATAGGGCGTGAAAGGGATAAAGAGAGGGATCGAGATAGGGATAGAGAACGATCCCGAGATTATGAGCGTGGCCATCATGAACGTGATCGTGAACGTGAAAGGGATCGTGACCGTGATAGGTACAAGGACGACAGGGACAGATATTCTGATCATCATAGGTACAGAGACCGGGAACCAGAGCATGATGAGGATTGGGAAAGGGGACGGTCATCAAGGACTCATAGTCATAGCAAGTCCCGTTTATCACAAGAAGAAGAAAGCCGTTCAAGATCCAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCGGAATAGTTGAACCAGTCAGTGTACATGCTTTAAACTCTATAGAGTATGGCTTTCCATGTTCATTTGGGTTCTCTCTGTGATGTTCTGGGCTCTTTGTTTCATCATTACCTTTTTGCCTATGCTGTTTATTGTCTGAACCTCAGCATGTGTCTTACCTACAGGAGCATGGTCTGATTTGGTGCAGAAAATAAGTAAGCTCATACATTTCTTTCATTTTACCAAATTTTCAATATTAAATTTTGGTAGATTTCCATGCTTCATTTGGTACAATAGTTATGTTCTAAGGTCTTTTAATATGGTCATGCTAATTGATGAACTTGTTCAATCAAAACCTACTCTATTGATGCTCTATTGAAATTTCTTCTTTCCTATAAAAAATTATTGCAGAAATGGTAGATTTTTGGTCCTTAGAATTATAACTGTTTATTTTATCACCGTAGTTGTACCTTCTATTGTTGTCATTTTTCACCATTAGTTTTGTGTTTCCATTTCATAGTCATGAAGGTTATAGCGTTTTTTGATGTGCTATATTAAGTCACTAAAGATATGGACCCATTAACACTTACATTTTCGAAAAAATAGTTAAAGAATTAGGCATAGACATGAATAGGAACTTTGGGCACTTCTATTGGAATTTTTAAATTATTTTTTTCATACTTTTGTTTTTAATATTTTTCACATTAAATTTAAAAGTATGTTTACTTTATAATATTTAGTTTTGAAAGGTTAGTTCGAAGATATGATAAAATATTCCATACTTTAGGAGGTTGGAAAAAGATAAAAGGTTAATATAGTTCTGTTCCAGGAAGTTCGTAATTATCTCTCTAAAGTTGTAGAAGTACAAGATTAGACTGATTAGTTTCTTCAATTATAATAAGTTCTAGAGGCGCAATCAATTTGGTTTGTCTTGGTTTGATTGCTGAACTGAAGCTGAATGCCAAAACCACAAAGTACAAAGCATAACAGAAAAGCAGAGCTGAAACGCCACTGATGACTAATTGAACTGCCCTTGAACCTATCAACCGATGGTTTAGTTGGTTTGATCTGGCAGTTTGCCATTTAGCTTAATCCATCTGGGCTTAGGTTGCTACCACTAAGTTCGGTGTAATACAGAGATGTCAACATTGGGCTCGTGCTGCTGAGGGTGTAATCCATGCAAGCGTTGGCCTTGGAATGCTGAGATTGTTGGAATAATCTACTTAAAAGTTTGATGTAATTCTCACGTTAATCTGTCCTAAATAAAACATTTTAAGTTAATTTTTTTAGATGATCGATGTCAAATGAGGCTCTCTAATCTCAGTTGTCAGTGACTATCTACATAGATTTTTGTTGCTTTTATATATGTTGATATACTAACTATAAATAGGAGAGGACGCCATTAACCTTGTTTCTGATTGGAAGTGCCCCTCGTTTTCTGTTGTTTTGTAGCTTAAAAGGGCATTTGATAGTGAAGATTTGATTCAGCGGAACAAAAGTTGGTTCGGGGACAACAACCAGGGACCTTTAAATTATCGTCTGCATAGAGAGAACCCATGCATGACAATGCCTTCTCGCTCTATTAATTTGATAAAGAGACTTCTTGGTTTAAACAGTTCTCACATTTCTTTTGAATGGTGTTTCTTCTTGACTTCTTGGCACTTGATGACATTGATATTCTTGGTTGTAATGGCTTTAAAATATTGCTGGAGTCTCAGTCATGTCTGAATGTTATCGGACATGTAATAGCTTACTATGTTGTTAGAGTAACTTAGCCTGGAGGATGTTGTGTTGTGCGTTATTCTGTTTTATAAGTTGTTGTATCATATATCCGCACCACTTTTCTTTCCTTTTTTTGTTTTCTTTGATACCACACCTTAGCCATTGTACTGTGAAGAATGTAGAGCTAACCCATTCTTTTAGAGCTTTCTCTACCCTTCGGAGGTTGTATGTATTCTCATACTTGTATGTATCTGTTACCAATTCACTAGATGTAGTTCCATTGGTTGTATGTACTAAATTCTTGTATGTACACGTCCTCAAATGACTAGATGCAGTTTCAGAGGATGTATATAACACTATACTTGTATGTACGTGTTACCAATTGATCAGATGTAGTTCCTACAGGTTGCTTATACCCATACTTGTATGCACCTGTTTACCAATTGAGTAGATGTTGTTTCATTGGTTGTATGTACTCGATTCTTTTATGTACATGTTCTCTAATGACTTGTAGTTTCAGAGATTGTATACAACACTATACTTGTATGTACCTGTTACCAATTCCCGTAGAGTTGTAGTCAAGAATATCAATTCAAGGAAAGCTGTTTTGTTGCTTCGTTCTTTTTGGGAACATTGTTTGGTTATTTGGCAG

mRNA sequence

ATGGACGAAGGAGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTCCATCGGAACGAGGCCATTTCGGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAGCGATGATTTGGGATTCAAGAGGGAGGAGGAACCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGTGGAGGTGCGACTGAAGTTACTGGTTTAGGAGATGCCGGTGGGCGTACTGTTTCGGAGAGAGTAACAGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGGCACCGGAGTTGGGATCAGAGTTGAATTAGGGCAAGGGAGCAAAGCCATCGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTGGGCATCAGGCTCCGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCCACAGCCACAGCCGCAGCCGCAGCCACAGCCACAGCCGCAGCACCATCACCAACCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTTAATGTCAATGGGGTTGGTGGAAACGGGTTCGCTAATATCGGGAGTGCAGGGGGAGGTGGCGGTGGAACAATTTTGTTTGTTGGGGATTTACATTGGTGGACTACAGATGCGGAGCTTGAGGTGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATTCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGTCCCTGTGTAGTTGCATATGCATCACCGTTTAGTGTTAAGAAAATGGGAGAAGCCCAAGTTAGCAGGAACCAACAGATAGCCCAAGCTACTAATCCTCAAGCAAGGAGAGCGCCTAATGAGGCTGTAGGTAAAATTGGTGGAAATAGTATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAACTGGGGAAGGAGTAATGCTCATGGAATGGGTGGTCGAGGACCAGCTGGCCCAATGAGGGGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTATTGCATCCCCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGTACATATGGTGGTTTTCCTGGAGCCCCAGCTCCCCCTTTCTCTGGAATTTTGTCATCCTTTCCTCCTGTCGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCAAGGTGGAGGGAGAGCAGGTGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCATTATGGTGAAGGCAGTCATGAAAGAGGGCCATGGGCAAATTCTGCGAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTCGGTTATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGACCTGACCATGACTGGCCAGATAGAAGGCCTCGTGAAGATAGAGATATAGGGCGTGAAAGGGATAAAGAGAGGGATCGAGATAGGGATAGAGAACGATCCCGAGATTATGAGCGTGGCCATCATGAACGTGATCGTGAACGTGAAAGGGATCGTGACCGTGATAGGTACAAGGACGACAGGGACAGATATTCTGATCATCATAGGTACAGAGACCGGGAACCAGAGCATGATGAGGATTGGGAAAGGGGACGGTCATCAAGGACTCATAGTCATAGCAAGTCCCGTTTATCACAAGAAGAAGAAAGCCGTTCAAGATCCAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCGGAATAG

Coding sequence (CDS)

ATGGACGAAGGAGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTCCATCGGAACGAGGCCATTTCGGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAGCGATGATTTGGGATTCAAGAGGGAGGAGGAACCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGTGGAGGTGCGACTGAAGTTACTGGTTTAGGAGATGCCGGTGGGCGTACTGTTTCGGAGAGAGTAACAGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGGCACCGGAGTTGGGATCAGAGTTGAATTAGGGCAAGGGAGCAAAGCCATCGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTGGGCATCAGGCTCCGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCCACAGCCACAGCCGCAGCCGCAGCCACAGCCACAGCCGCAGCACCATCACCAACCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTTAATGTCAATGGGGTTGGTGGAAACGGGTTCGCTAATATCGGGAGTGCAGGGGGAGGTGGCGGTGGAACAATTTTGTTTGTTGGGGATTTACATTGGTGGACTACAGATGCGGAGCTTGAGGTGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATTCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGTCCCTGTGTAGTTGCATATGCATCACCGTTTAGTGTTAAGAAAATGGGAGAAGCCCAAGTTAGCAGGAACCAACAGATAGCCCAAGCTACTAATCCTCAAGCAAGGAGAGCGCCTAATGAGGCTGTAGGTAAAATTGGTGGAAATAGTATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAACTGGGGAAGGAGTAATGCTCATGGAATGGGTGGTCGAGGACCAGCTGGCCCAATGAGGGGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTATTGCATCCCCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGTACATATGGTGGTTTTCCTGGAGCCCCAGCTCCCCCTTTCTCTGGAATTTTGTCATCCTTTCCTCCTGTCGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCAAGGTGGAGGGAGAGCAGGTGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCATTATGGTGAAGGCAGTCATGAAAGAGGGCCATGGGCAAATTCTGCGAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTCGGTTATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGACCTGACCATGACTGGCCAGATAGAAGGCCTCGTGAAGATAGAGATATAGGGCGTGAAAGGGATAAAGAGAGGGATCGAGATAGGGATAGAGAACGATCCCGAGATTATGAGCGTGGCCATCATGAACGTGATCGTGAACGTGAAAGGGATCGTGACCGTGATAGGTACAAGGACGACAGGGACAGATATTCTGATCATCATAGGTACAGAGACCGGGAACCAGAGCATGATGAGGATTGGGAAAGGGGACGGTCATCAAGGACTCATAGTCATAGCAAGTCCCGTTTATCACAAGAAGAAGAAAGCCGTTCAAGATCCAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCGGAATAG

Protein sequence

MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKSDDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIPDLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPQQQQQQQQQQQQQQQQQQQQQQPQPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFANIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPREDRDIGRERDKERDRDRDRERSRDYERGHHERDRERERDRDRDRYKDDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEESRSRSRDADYGKRRRLTSE

Homology

[Close]

BLAST of CsaV3_7G012700.1 vs. NCBI nr
Match: XP_011658934.1 (PREDICTED: spidroin-1 [Cucumis sativus] >KGN44018.1 hypothetical protein Csa_7G104800 [Cucumis sativus])

HSP 1 Score: 871.3 bits (2250), Expect = 2.3e-249
Identity = 567/606 (93.56%), Postives = 567/606 (93.56%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120
           DDLGFKREEEPKMEPPAPVPPSS ASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAXXXXXXXXX 180
           DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQA         
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQA--------- 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240
                          XXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN
Sbjct: 181 ---------------XXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240

Query: 241 GVGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300
           GV         XXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS
Sbjct: 241 GVXXXXXXXXXXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300

Query: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360
           KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN
Sbjct: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360

Query: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXXXXXX 420
           PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRG  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480
           XXXXXXXXXXXXXXX  QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP
Sbjct: 421 XXXXXXXXXXXXXXXXXQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480

Query: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX 540
           PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX
Sbjct: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY 582

Query: 601 RDDRDV 607
           RDDR V
Sbjct: 601 RDDRXV 582

[Close]

BLAST of CsaV3_7G012700.1 vs. NCBI nr
Match: XP_022936014.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita moschata] >XP_022936015.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita moschata])

HSP 1 Score: 778.5 bits (2009), Expect = 2.1e-221
Identity = 534/608 (87.83%), Postives = 549/608 (90.30%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120
           DDLGFK EEEPKMEPPA VPP+SGASIPG GGG T+V GLGD GG +V+ERVTEGYNQIP
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGD-GGHSVAERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAXXXXXXXXX 180
           DLRTNEMAIR G GSGPP+G G GIRVELGQGSK  ELEERSSNNVA HQA         
Sbjct: 121 DLRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQA--------- 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Q GVLGNP SVENEGLLRQGGGVNVN
Sbjct: 181 -PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGVLGNPVSVENEGLLRQGGGVNVN 240

Query: 241 G----VGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKA 300
           G              XXXXXXXX ILFVGDLHWWTTDAELEVELCKYGPLKEVKF+DEKA
Sbjct: 241 GXXXXXXXXXXXXXXXXXXXXXXTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKA 300

Query: 301 SGKSKGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIA 360
           SGKSKGYCQVEFYD SAATACKEGMNGH+FNGRPCVVAYASPFSVK+MGEAQV+RNQQ+A
Sbjct: 301 SGKSKGYCQVEFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMA 360

Query: 361 QATNPQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXX 420
           QATNPQARR PN+ VGK+GG+SIATGGNYQGGDNNRGSGR   XXXXXXXXXXXXXXXXX
Sbjct: 361 QATNPQARRGPNDTVGKMGGSSIATGGNYQGGDNNRGSGRXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG 480
           XXXXXXXXXXXXXXXXXXX GQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG 480

Query: 481 APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXX 540
           APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGM XX
Sbjct: 481 APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSS 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RG WANSAKEKDRGSERDWSQSS
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAWANSAKEKDRGSERDWSQSS 597

Query: 601 DRRYRDDR 605
           DRRYRDDR
Sbjct: 601 DRRYRDDR 597

[Close]

BLAST of CsaV3_7G012700.1 vs. NCBI nr
Match: XP_022975849.1 (cleavage and polyadenylation specificity factor subunit 6-like [Cucurbita maxima])

HSP 1 Score: 763.1 bits (1969), Expect = 8.9e-217
Identity = 532/609 (87.36%), Postives = 548/609 (89.98%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120
           DDLGFK EEEPKMEPPA VPP+SGASIPG GGG T+V GLGD GG +V+ERVTEGYNQIP
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGD-GGHSVAERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAXXXXXXXXX 180
           DLR NEMAIR G GSGPP+G    IRVELGQGSK  ELEERSSNNVA            X
Sbjct: 121 DLRANEMAIRVGAGSGPPIGGXXXIRVELGQGSKTNELEERSSNNVA------------X 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Q GVLGNP SVENEGLLRQGGGVNVN
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGVLGNPVSVENEGLLRQGGGVNVN 240

Query: 241 G----VGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKA 300
           G              XXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKF+DEKA
Sbjct: 241 GXXXXXXXXXXXXXXXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKA 300

Query: 301 SGKSKGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIA 360
           SGKSKGYCQVEFYD SAATACKEGMNGH+FNGRPCVVAYASPFSVK+MGEAQV+RNQQ+A
Sbjct: 301 SGKSKGYCQVEFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMA 360

Query: 361 QATNPQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXX 420
           QATNPQARR PN+ VGK+GG+SIATGGNYQGGDNNRGSGR   XXXXXXXXXXXXXXXXX
Sbjct: 361 QATNPQARRGPNDTVGKMGGSSIATGGNYQGGDNNRGSGRXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG 480
           XXXXXXXXXXXXXXXXXXX GQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG 480

Query: 481 APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXX 540
           APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGM XX
Sbjct: 481 APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSS 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G WANSAKEKDRGSERDWSQSS
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAWANSAKEKDRGSERDWSQSS 596

Query: 601 DRRYRDDRD 606
           DRRYRDDR+
Sbjct: 601 DRRYRDDRE 596

[Close]

BLAST of CsaV3_7G012700.1 vs. NCBI nr
Match: XP_022981402.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita maxima])

HSP 1 Score: 753.4 bits (1944), Expect = 7.1e-214
Identity = 506/604 (83.77%), Postives = 523/604 (86.59%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120
           +DLGFK  EEPK EPPA V PSSGASIPG+GGGATEV+GLGD GG +VS R TEGYNQIP
Sbjct: 61  EDLGFKNVEEPKREPPAAVAPSSGASIPGVGGGATEVSGLGD-GGPSVSVRPTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAXXXXXXXXX 180
           DLRTNEMAIRGG GSGPP+G G GIRVELGQGSK  EL+E                    
Sbjct: 121 DLRTNEMAIRGGAGSGPPIGGGGGIRVELGQGSKTNELDE-------------------- 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240
               XXXXXXXXXXXXXXXXXXXXXXXXXXXX     +LGNPG+VENEGLLRQGGGVNVN
Sbjct: 181 ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLGNPGNVENEGLLRQGGGVNVN 240

Query: 241 GVGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300
           G          XXXXXXXX ILFVGDLHWWTTDAELEVELCKYGPLKEVKF+DEKASGKS
Sbjct: 241 GAXXXXXXXXXXXXXXXXXTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKS 300

Query: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360
           KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVA+ASPFSVK+MGEAQV+RNQQIAQATN
Sbjct: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAFASPFSVKRMGEAQVNRNQQIAQATN 360

Query: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXXXXXX 420
           PQARR PNEA GKIGG++IATGGNYQG DNNRGSGRGNW XXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PQARRGPNEAAGKIGGSNIATGGNYQGVDNNRGSGRGNWGXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480
           XXXXXXXXXXXXXXX       TPPLLHPQSMMGQGFDP+FGAPMGRMG YGGFPGAPAP
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXTPPLLHPQSMMGQGFDPTFGAPMGRMGAYGGFPGAPAP 480

Query: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX 540
           PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMP+SGVDG NMGM       
Sbjct: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPSSGVDGHNMGMWTDPSMG 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY 600
                XXXXXXXXXXXXXXXXXXXXXXXXX HERG WANSAKEKDRGSERDWSQSSDRRY
Sbjct: 541 GWGSEXXXXXXXXXXXXXXXXXXXXXXXXXSHERGAWANSAKEKDRGSERDWSQSSDRRY 579

Query: 601 RDDR 605
           RDDR
Sbjct: 601 RDDR 579

[Close]

BLAST of CsaV3_7G012700.1 vs. NCBI nr
Match: XP_023535463.1 (cleavage and polyadenylation specificity factor subunit 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 753.1 bits (1943), Expect = 9.2e-214
Identity = 524/608 (86.18%), Postives = 538/608 (88.49%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120
           DDLGFK EEEPKMEPPA VPP+SGASIPG GGG T+V GLGD GG +V+ERVTEGYNQIP
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGD-GGHSVAERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAXXXXXXXXX 180
           DLRTNEMAIR G GSGPP            Q SK  ELEERSSNNVA HQ          
Sbjct: 121 DLRTNEMAIRVGAGSGPPXXXXXXXXXXXXQXSKTNELEERSSNNVAAHQ---------- 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Q GVLGNP SVENEGLLRQGGGVNVN
Sbjct: 181 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGVLGNPVSVENEGLLRQGGGVNVN 240

Query: 241 G----VGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKA 300
           G              XXXXXXXX ILFVGDLHWWTTDAELEVELCKYGPLKEVKF+DEKA
Sbjct: 241 GXXXXXXXXXXXXXXXXXXXXXXTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKA 300

Query: 301 SGKSKGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIA 360
           SGKSKGYCQVEFYD SAATACKEGMNGH+FNGRPCVVAYASPFSVK+MGEAQV+RNQQ+A
Sbjct: 301 SGKSKGYCQVEFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMA 360

Query: 361 QATNPQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXX 420
           QATNPQARR PN+ VGK+GG+SIATGGNYQGGDNNRGSGR   XXXXXXXXXXXXXXXXX
Sbjct: 361 QATNPQARRGPNDTVGKMGGSSIATGGNYQGGDNNRGSGRXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG 480
           XXXXXXXXXXXXXXXXXXX GQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPG 480

Query: 481 APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXX 540
           APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGM XX
Sbjct: 481 APAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSS 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RG WANSAKEKDRGSERDWSQSS
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAWANSAKEKDRGSERDWSQSS 595

Query: 601 DRRYRDDR 605
           DRRYRDDR
Sbjct: 601 DRRYRDDR 595

[Close]

BLAST of CsaV3_7G012700.1 vs. TAIR10
Match: AT5G55670.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 357.1 bits (915), Expect = 2.7e-98
Identity = 311/646 (48.14%), Postives = 365/646 (56.50%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 60
           MDEG+G      DQ+DQFH+NEAISAVADDGF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 61  SDDLGFKREEEPK--MEPPAPVPPSSG-----ASIPGIGGGATE----VTGLGDAGGRTV 120
           +D+ G + EE+ K  ME    V P  G      SIPG+ G + E                
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEXXXXXXXXXXXXXXXX 120

Query: 121 SERVTEGYNQIPDLRTNEMA--IRGGVGSGPPVGTGVGIRVELGQGS-KAIELEERSSNN 180
                       +++ ++++  I GG+G+    GTG G+RVELGQ S +A +LE    NN
Sbjct: 121 XXXXXXXXXXAQEVKVSDVSQEIPGGIGT----GTGGGLRVELGQASNRANDLEAPRGNN 180

Query: 181 VAGHQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSV 240
           ++                                              P   VLGN    
Sbjct: 181 IS------------------------------------------QGLLPPPPVLGN---- 240

Query: 241 ENEGLLR-----------QGGGVNVNGVGGN----GFANIGXXXXXXXXXILFVGDLHWW 300
            NE L+R            G G N+ G G N    G     XXXXXXXXX LFVGDLHWW
Sbjct: 241 -NENLMRPVMGNVNGGIPPGPGSNMVGNGANIAMPGVVXXXXXXXXXXXXXLFVGDLHWW 300

Query: 301 TTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMNGHIFNGRP 360
           TTDAELE ELCKYG +KEVKF+DEKASGKSKGYCQVEFYD  AA+ACK+ +NG+ FNGRP
Sbjct: 301 TTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRP 360

Query: 361 CVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARR-APNEAVGKIGGNSIATGGNYQGG- 420
           CVV YASP+SVK+MGEAQV+R QQ AQ+   QA+R  P +                    
Sbjct: 361 CVVEYASPYSVKRMGEAQVNRTQQ-AQSVIAQAKRGGPADXXXXXXXXXXXXXXXXXXXX 420

Query: 421 ---DNNRGSGRGNWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQGIGATPP 480
                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +G  PP
Sbjct: 421 XXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGTGPP 480

Query: 481 L-LHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 540
           + +  Q MMGQGF+ +FG PM RMG            F G+LSSFPPVGGVGLPGVAPHV
Sbjct: 481 MNMMHQPMMGQGFEQAFGGPMARMGGXXXXXXXXXXXFPGLLSSFPPVGGVGLPGVAPHV 540

Query: 541 NPAFFGRGMPMNGMGMMPTSGVD-GPNMGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           NPAFFGRGMPMNGMGMMP +GVD G NMGM                              
Sbjct: 541 NPAFFGRGMPMNGMGMMPNAGVDGGHNMGMWDPNSGGWGAGEDLGSGRAAESSYGEEAAS 589

Query: 601 XXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYD 610
                   HERG   N  KEK+R SER+WS SSDRR R+D+D GY+
Sbjct: 601 DHQYGEVNHERGARPNPVKEKERASEREWSGSSDRRNREDKDAGYE 589

[Close]

BLAST of CsaV3_7G012700.1 vs. TAIR10
Match: AT1G13190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-43
Identity = 203/514 (39.49%), Postives = 258/514 (50.19%), Query Frame = 0


Query: 24  ISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKSDDLGFKREEEPKMEPPAPVPPSS 83
           I A+AD+  +G D+DEY+DLY+DVNVGE F           F+   +P  +PPA V  +S
Sbjct: 21  IPALADEELMG-DDDEYDDLYSDVNVGESF-----------FQAHNQP--QPPAQV-NTS 80

Query: 84  GASIPGIGGGATEVTGLGDAGGRTVSERVTE--GYNQI--PDLRTNEMAIRGGVGSGPPV 143
            AS+            +G   G TV  +     G+N I  PD R++        G+    
Sbjct: 81  NASLQAQNSHVAAEPRMGIVSGGTVEGKYRNDGGHNGISGPDTRSDVYPQASSFGA---- 140

Query: 144 GTGVGIRVELG----QGSKAIELEERSSNNVAGHQAXXXXXXXXXXXXXXXXXXXXXXXX 203
             G+ I ++      QGS  + L   +++  +G+                          
Sbjct: 141 -KGLNIDIQSNKIAQQGSTTVVL---NNHGFSGNAVNVPEMPVHNSYGAPPQGAQQI--- 200

Query: 204 XXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFANIGXXXX 263
                             P S +  NP  + N+   +       + V  NG         
Sbjct: 201 ------------------PVSQMSVNPNVMMNKSPTQ-------SFVVDNG--------- 260

Query: 264 XXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAAT 323
                +LFVG+LHWWTTDAE+E  L +YG +KE+KF+DE+ SGKSKGYCQVEFYDS+AA 
Sbjct: 261 ---NTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAA 320

Query: 324 ACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIG 383
           ACKEGMNG IFNG+ CVVA+ASP ++K+MG     RN    Q  N    R P        
Sbjct: 321 ACKEGMNGFIFNGKACVVAFASPETLKQMGANFTGRN----QGQNXXXXRRPLN-XXXXX 380

Query: 384 GNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 443
                           R  GRG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 381 XXXXXXXXXXXXXXXXRNYGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 440

Query: 444 FGQGIGATPPLLHPQSMMGQ-GFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 503
                        PQ MMG  GFDP+F   MGR   YGG+ G   P   G+  S+P V  
Sbjct: 441 XXXXXXXXXXXXXPQGMMGAGGFDPTF---MGRGAGYGGYSGIAYP---GMPHSYPGVNA 455

Query: 504 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDG 529
           +G+ G+APHVNPAFFG      GMG M +SG++G
Sbjct: 501 MGMVGIAPHVNPAFFG-----TGMGTMGSSGMNG 455

[Close]

BLAST of CsaV3_7G012700.1 vs. TAIR10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-07
Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 263 FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMN 322
           FVG L W T D  LE    +YG + + K  +++ +G+S+G+  V F D  A     EGMN
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 323 GHIFNGRPCVV 334
           G   +GR   V
Sbjct: 71  GQDLDGRSITV 81

[Close]

BLAST of CsaV3_7G012700.1 vs. TAIR10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-07
Identity = 28/98 (28.57%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 262 LFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGM 321
           LF+G L W   +  L+     +G + EV+   +K SG+S+G+  V+F +   A + K+ M
Sbjct: 43  LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102

Query: 322 NGHIFNGRPCVVAYA------SPFSVKKMGEAQVSRNQ 354
           +G    GRP  +++A       P  V ++G+++  R +
Sbjct: 103 DGKGLLGRPLRISFALERVRGGPVVVPRLGKSKRERER 140

[Close]

BLAST of CsaV3_7G012700.1 vs. TAIR10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-06
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 262 LFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGM 321
           LF+G L W T DA L      +G + + K   ++ +G+S+G+  V F D  AATA    M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 322 NGHIFNGR 330
           +G   NGR
Sbjct: 97  DGKELNGR 104

[Close]

BLAST of CsaV3_7G012700.1 vs. Swiss-Prot
Match: sp|Q9VSH4|CPSF6_DROME (Cleavage and polyadenylation specificity factor subunit CG7185 OS=Drosophila melanogaster OX=7227 GN=CG7185 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-06
Identity = 30/92 (32.61%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 262 LFVGDLHWWTTDAELEVELCKYG--PLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKE 321
           L+VG+L WWTTD ++   L   G   L+EVKF++ +A+G+SKG+  +     S+  A  +
Sbjct: 95  LYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLD 154

Query: 322 GMNGHIFNGRPCVVAYASPFSVKKMGEAQVSR 352
            +     +G+  VV Y S  ++ +    Q +R
Sbjct: 155 QLPKKEMHGQAPVVTYPSKQALTQFESLQKTR 186

[Close]

BLAST of CsaV3_7G012700.1 vs. Swiss-Prot
Match: sp|Q03250|RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-05
Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 263 FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMN 322
           FVG L W T D  LE    +YG + + K  +++ +G+S+G+  V F D  A     EGMN
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 323 GHIFNGRPCVV 334
           G   +GR   V
Sbjct: 71  GQDLDGRSITV 81

[Close]

BLAST of CsaV3_7G012700.1 vs. Swiss-Prot
Match: sp|P49310|GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-05
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 263 FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMN 322
           FVG L W T D  LE    +YG + + K  +++ +G+S+G+  V F D  +     EGMN
Sbjct: 11  FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 323 GHIFNGRPCVV 334
           G   +GR   V
Sbjct: 71  GQDLDGRSITV 81

[Close]

BLAST of CsaV3_7G012700.1 vs. Swiss-Prot
Match: sp|Q9SVM8|RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-05
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 262 LFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGM 321
           LF+G L W T DA L      +G + + K   ++ +G+S+G+  V F D  AATA    M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 322 NGHIFNGR 330
           +G   NGR
Sbjct: 97  DGKELNGR 104

[Close]

BLAST of CsaV3_7G012700.1 vs. Swiss-Prot
Match: sp|Q03878|GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.7e-05
Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 263 FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMN 322
           FVG L W T D  LE    ++G + + K  +++ +G+S+G+  V F D  +     EGMN
Sbjct: 9   FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68

Query: 323 GHIFNGRPCVV 334
           G   +GR   V
Sbjct: 69  GQELDGRNITV 79

[Close]

BLAST of CsaV3_7G012700.1 vs. TrEMBL
Match: tr|A0A0A0K3G6|A0A0A0K3G6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV=1)

HSP 1 Score: 871.3 bits (2250), Expect = 1.5e-249
Identity = 567/606 (93.56%), Postives = 567/606 (93.56%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120
           DDLGFKREEEPKMEPPAPVPPSS ASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAXXXXXXXXX 180
           DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQA         
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQA--------- 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240
                          XXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN
Sbjct: 181 ---------------XXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240

Query: 241 GVGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300
           GV         XXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS
Sbjct: 241 GVXXXXXXXXXXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300

Query: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360
           KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN
Sbjct: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360

Query: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXXXXXX 420
           PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRG  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480
           XXXXXXXXXXXXXXX  QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP
Sbjct: 421 XXXXXXXXXXXXXXXXXQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480

Query: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX 540
           PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX
Sbjct: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY 582

Query: 601 RDDRDV 607
           RDDR V
Sbjct: 601 RDDRXV 582

[Close]

BLAST of CsaV3_7G012700.1 vs. TrEMBL
Match: tr|A0A0A0K306|A0A0A0K306_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G103790 PE=4 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 2.9e-171
Identity = 434/609 (71.26%), Postives = 435/609 (71.43%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120
           DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAXXXXXXXXX 180
           DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERS                  
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERS------------------ 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNVN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 GVGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360
                                           +AYASPFSVKKMGEAQVSRNQQIAQATN
Sbjct: 301 --------------------------------IAYASPFSVKKMGEAQVSRNQQIAQATN 360

Query: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXXXXXX 420
           PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRG  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480
           XXXXXXXXXXXXXXX  QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP
Sbjct: 421 XXXXXXXXXXXXXXXXXQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 439

Query: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX 540
           PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX
Sbjct: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXXX 439

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWSQSSDRRY 439

Query: 601 RDDRDVGYD 610
           RDDRDVGYD
Sbjct: 601 RDDRDVGYD 439

[Close]

BLAST of CsaV3_7G012700.1 vs. TrEMBL
Match: tr|A0A2P5F899|A0A2P5F899_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_100570 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 2.1e-142
Identity = 367/595 (61.68%), Postives = 396/595 (66.55%), Query Frame = 0


Query: 9   GEGVDQIDQFHRNEAISAVADDGFLGEDE--DEYEDLYNDVNVGEGFLQSLRKSDDLGFK 68
           GEG DQ+DQFHRNEAISAVADDGFLGE+E  D+YEDLYNDVNVGEGFLQS+RK+ D+GF+
Sbjct: 4   GEGTDQMDQFHRNEAISAVADDGFLGEEEEDDDYEDLYNDVNVGEGFLQSIRKNVDVGFR 63

Query: 69  RE--EEPKME-PPAPVPPSSGASIPGIGG----GATEVTGLGDAGGRTVSERVTEGYNQI 128
            E  EE K+E PP       G SIPG+GG                          GYNQ 
Sbjct: 64  NEVVEEKKIEQPPLVGQDQPGVSIPGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXGYNQN 123

Query: 129 PDLRTNEMAIRGGVGSGPPVGTGVGIRVELGQG-SKAIELEERSSNNVAGHQAXXXXXXX 188
              R NEM ++G VGSG  VG G GIRVELGQG SK  E EE+S N   G      XXXX
Sbjct: 124 LGFRGNEMGLKGSVGSGLAVGGGSGIRVELGQGSSKMNEFEEQSGNTSVGVHGIGQXXXX 183

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVN 248
           XXXXXXXXXXXXXX                                              
Sbjct: 184 XXXXXXXXXXXXXXHVG-------------------PXXXXXXXXXXXXXXXXXXXXXXX 243

Query: 249 VNGVGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASG 308
                        XXXXXXXXXILFVGDLHWWTTDAELE ELCKYG +KEVKF+DEKASG
Sbjct: 244 XXXXXXXXXXXXXXXXXXXXXXILFVGDLHWWTTDAELEAELCKYGQVKEVKFFDEKASG 303

Query: 309 KSKGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQA 368
           KSKGYCQVEFYD +AATACKE MNGH+FNGRPCVVA+ASPFSVK+MGEAQV+RNQQ+AQ 
Sbjct: 304 KSKGYCQVEFYDPAAATACKEAMNGHLFNGRPCVVAFASPFSVKRMGEAQVNRNQQMAQT 363

Query: 369 TNPQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXXXX 428
           +  Q RR PN+A  K GGN+I+TGGNYQ             XXXX               
Sbjct: 364 SVSQPRRGPNDAGAKTGGNNISTGGNYQXXXXXXXXXXXXXXXXXAQNMGNRGPVGPMRN 423

Query: 429 XXXXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAP 488
                            FGQGIGATPPLLHPQSMMGQGFDP+FGAPMGRMG+YGGFPGAP
Sbjct: 424 RGGGMGGRGIMGNGASGFGQGIGATPPLLHPQSMMGQGFDPAFGAPMGRMGSYGGFPGAP 483

Query: 489 APPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXX 548
            PPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPT+GVDGPNMGM  XXX
Sbjct: 484 TPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTTGVDGPNMGMWSXXX 543

Query: 549 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGSERDWS 594
           XXXXXXXXXXXXXXXXXXXXXXXX         H+RG W N+ KEKDRGSERDWS
Sbjct: 544 XXXXXXXXXXXXXXXXXXXXXXXXSDHQYGEVTHDRGGWPNTMKEKDRGSERDWS 579

[Close]

BLAST of CsaV3_7G012700.1 vs. TrEMBL
Match: tr|A0A1S3CSQ1|A0A1S3CSQ1_CUCME (LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucumis melo OX=3656 GN=LOC103504436 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 2.4e-141
Identity = 351/374 (93.85%), Postives = 355/374 (94.92%), Query Frame = 0


Query: 213 PPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFANIGXXXXXXXXXILFVGDLHWWTT 272
           PPQSGVLGNPGSVENEGLLRQGGGVNVN           XXXXXXXX +LFVGDLHWWTT
Sbjct: 25  PPQSGVLGNPGSVENEGLLRQGGGVNVNXXXXXXXXXXXXXXXXXXXTVLFVGDLHWWTT 84

Query: 273 DAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMNGHIFNGRPCV 332
           DAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYD SAATACKEGMNGHIFNGRPCV
Sbjct: 85  DAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCV 144

Query: 333 VAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIGGNSIATGGNYQGGDNNR 392
           VAYASPFSVKKMGEAQV+RNQQIAQATNPQARRAPN+AVGKIGG+SIATGGNYQGGDNNR
Sbjct: 145 VAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATGGNYQGGDNNR 204

Query: 393 GSGRGNWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQGIGATPPLLHPQSM 452
           GSGR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FGQGIGATPPLLHPQSM
Sbjct: 205 GSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFGQGIGATPPLLHPQSM 264

Query: 453 MGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRG 512
           MGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRG
Sbjct: 265 MGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRG 324

Query: 513 MPMNGMGMMPTSGVDGPNMGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH 572
           MPMNGMGMMPTSGVDGPNMGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 325 MPMNGMGMMPTSGVDGPNMGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 384

Query: 573 ERGPWANSAKEKDR 587
            RGPWANSAKEKDR
Sbjct: 385 XRGPWANSAKEKDR 398

[Close]

BLAST of CsaV3_7G012700.1 vs. TrEMBL
Match: tr|A0A2P5A8S8|A0A2P5A8S8_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356920 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 5.8e-140
Identity = 358/589 (60.78%), Postives = 387/589 (65.70%), Query Frame = 0


Query: 9   GEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRKSDDLGFKR 68
           GEG DQ+DQFHRNEAISAVADDGFLGE+E D+YEDLYNDVNVGEGFLQS+RK++D+GF+ 
Sbjct: 4   GEGTDQMDQFHRNEAISAVADDGFLGEEEDDDYEDLYNDVNVGEGFLQSMRKNEDVGFRN 63

Query: 69  E--EEPKME-PPAPVPPSSGASIPGI----GGGATEVTGLGDAGGRTVSERVTEGYNQIP 128
           E  EE K+E PP       G SIPG+                 G R V     EGYNQ  
Sbjct: 64  EVVEEKKIEQPPLVGQDQPGVSIPGVXXXXXXXXXXXXXXXXXGARVVGRVGGEGYNQNL 123

Query: 129 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQ-GSKAIELEERSSNNVAGHQAXXXXXXXX 188
             R NEM ++G VGSGP VG G GIRVELGQ  SK  E EE+S N   G      XXXXX
Sbjct: 124 GFRGNEMGLKGSVGSGPAVGGGGGIRVELGQASSKMNEFEEQSGNTSVGVHGIGQXXXXX 183

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQSGVLGNPGSVENEGLLRQGGGVNV 248
           XXXXXXXXXXXXXX                                              
Sbjct: 184 XXXXXXXXXXXXXXVG-------------------PXXXXXXXXXXXXXXXXXXXXXXXX 243

Query: 249 NGVGGNGFANIGXXXXXXXXXILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGK 308
                       XXXXXXXXXILFVGDLHWWTTDAELE ELCKYG +KEVKF+DEKASGK
Sbjct: 244 XXXXXXXXXXXXXXXXXXXXXILFVGDLHWWTTDAELEAELCKYGQVKEVKFFDEKASGK 303

Query: 309 SKGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQAT 368
           SKGYCQVEFYD +AATACKE MNGH+FNGRPCVVA+ASPFSVK+MGEAQV+RNQQ+AQ +
Sbjct: 304 SKGYCQVEFYDPAAATACKEAMNGHLFNGRPCVVAFASPFSVKRMGEAQVNRNQQMAQTS 363

Query: 369 NPQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWXXXXXXXXXXXXXXXXXXXX 428
             Q RR PN+A  K GGN+I+TGGNYQ             XXXX                
Sbjct: 364 VSQPRRGPNDAGAKTGGNNISTGGNYQXXXXXXXXXXXXXXXXXAQNMGNRGPVGPMRNR 423

Query: 429 XXXXXXXXXXXXXXXXFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPA 488
                           F QGIGATPPLLHPQSMMGQGFDP+FGAPMGRMG YGGFPG P 
Sbjct: 424 GGGIGGRGIMGNGGSGFAQGIGATPPLLHPQSMMGQGFDPAFGAPMGRMGNYGGFPGGPT 483

Query: 489 PPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMXXXXXX 548
           PPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPT+GVDGPNMGM   XXX
Sbjct: 484 PPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTTGVDGPNMGMWSDXXX 543

Query: 549 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHERGPWANSAKEKDRGS 589
           XXXXXXXXXXXXXXXXXXX             H+RG W N+ KEKDRGS
Sbjct: 544 XXXXXXXXXXXXXXXXXXXEEAASDHQYGEVTHDRGGWPNTMKEKDRGS 573

The following BLAST results are available for this feature:

BLAST of CsaV3_7G012700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658934.1	2.3e-249	93.56	PREDICTED: spidroin-1 [Cucumis sativus] >KGN44018.1 hypothetical protein Csa_7G1...	[more]
XP_022936014.1	2.1e-221	87.83	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita m...	[more]
XP_022975849.1	8.9e-217	87.36	cleavage and polyadenylation specificity factor subunit 6-like [Cucurbita maxima...	[more]
XP_022981402.1	7.1e-214	83.77	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita m...	[more]
XP_023535463.1	9.2e-214	86.18	cleavage and polyadenylation specificity factor subunit 6-like [Cucurbita pepo s...	[more]

BLAST of CsaV3_7G012700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55670.1	2.7e-98	48.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G13190.1	1.4e-43	39.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G21660.1	6.3e-07	38.03	cold, circadian rhythm, and rna binding 2	[more]
AT3G08000.1	8.3e-07	28.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.1	1.4e-06	38.24	glycine-rich RNA-binding protein 2	[more]

BLAST of CsaV3_7G012700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9VSH4\|CPSF6_DROME	3.9e-06	32.61	Cleavage and polyadenylation specificity factor subunit CG7185 OS=Drosophila mel...	[more]
sp\|Q03250\|RBG7_ARATH	1.1e-05	38.03	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
sp\|P49310\|GRP1_SINAL	2.5e-05	36.62	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
sp\|Q9SVM8\|RBG2_ARATH	2.5e-05	38.24	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q03878\|GRP1_DAUCA	5.7e-05	35.21	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]

BLAST of CsaV3_7G012700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3G6\|A0A0A0K3G6_CUCSA	1.5e-249	93.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV=1	[more]
tr\|A0A0A0K306\|A0A0A0K306_CUCSA	2.9e-171	71.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G103790 PE=4 SV=1	[more]
tr\|A0A2P5F899\|A0A2P5F899_9ROSA	2.1e-142	61.68	Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_100570 P...	[more]
tr\|A0A1S3CSQ1\|A0A1S3CSQ1_CUCME	2.4e-141	93.85	LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit CG7...	[more]
tr\|A0A2P5A8S8\|A0A2P5A8S8_PARAD	5.8e-140	60.78	Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_3569...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G012700	CsaV3_7G012700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G012700.1.exon1	CsaV3_7G012700.1.exon1	exon
CsaV3_7G012700.1.exon2	CsaV3_7G012700.1.exon2	exon
CsaV3_7G012700.1.exon3	CsaV3_7G012700.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G012700.1.cds1	CsaV3_7G012700.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G012700.1	CsaV3_7G012700.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 173..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 524..739
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 565..739
None	No IPR available	PANTHER	PTHR44751:SF1	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 1..739
None	No IPR available	PANTHER	PTHR44751	FAMILY NOT NAMED	coord: 1..739
None	No IPR available	CDD	cd12372	RRM_CFIm68_CFIm59	coord: 262..335 e-value: 2.145E-32 score: 120.093
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 261..334 e-value: 1.1E-18 score: 78.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 262..331 e-value: 3.2E-13 score: 49.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 260..338 score: 13.277
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 187..203 coord: 254..336