CsaV3_7G012690.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G012690.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 6673146 .. 6673395 (-)
Sequence length165
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGTGCTTCAGTTTAGAAGTACTTGAGGCTGTATTAATAGCATATTGTGATGCTGCTGACAGTTGTTTTCAAGGTAATGGTAATTTCTATGGAAGACTTGTGCATCATTTTCTCATCAGTAAATGTTCATGTTGTTAGATTGTTACATTCTTTGTTAGGAATTTGGAGTAACGTAAATGACCCTATCGAGAAATTAGATGTTGTTATCCATGCGACTTTAGTGTCTTCATGTTGCAACTTGTAA

mRNA sequence

ATGAAATTGTGCTTCAGTTTAGAAGTACTTGAGGCTGTATTAATAGCATATTGTGATGCTGCTGACAGTTGTTTTCAAGGAATTTGGAGTAACGTAAATGACCCTATCGAGAAATTAGATGTTGTTATCCATGCGACTTTAGTGTCTTCATGTTGCAACTTGTAA

Coding sequence (CDS)

ATGAAATTGTGCTTCAGTTTAGAAGTACTTGAGGCTGTATTAATAGCATATTGTGATGCTGCTGACAGTTGTTTTCAAGGAATTTGGAGTAACGTAAATGACCCTATCGAGAAATTAGATGTTGTTATCCATGCGACTTTAGTGTCTTCATGTTGCAACTTGTAA

Protein sequence

MKLCFSLEVLEAVLIAYCDAADSCFQGIWSNVNDPIEKLDVVIHATLVSSCCNL
Homology
[Close]
BLAST of CsaV3_7G012690.1 vs. NCBI nr
Match: KGN44016.1 (hypothetical protein Csa_7G104290 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 7.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MKLCFSLEVLEAVLIAYCDAADSCFQGIWSNVNDPIEKLDVVIHATLVSSCCNL 55
          MKLCFSLEVLEAVLIAYCDAADSCFQGIWSNVNDPIEKLDVVIHATLVSSCCNL
Sbjct: 1  MKLCFSLEVLEAVLIAYCDAADSCFQGIWSNVNDPIEKLDVVIHATLVSSCCNL 54

[Close]
BLAST of CsaV3_7G012690.1 vs. TrEMBL
Match: tr|A0A0A0K8C2|A0A0A0K8C2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104290 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.8e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MKLCFSLEVLEAVLIAYCDAADSCFQGIWSNVNDPIEKLDVVIHATLVSSCCNL 55
          MKLCFSLEVLEAVLIAYCDAADSCFQGIWSNVNDPIEKLDVVIHATLVSSCCNL
Sbjct: 1  MKLCFSLEVLEAVLIAYCDAADSCFQGIWSNVNDPIEKLDVVIHATLVSSCCNL 54

The following BLAST results are available for this feature:
BLAST of CsaV3_7G012690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44016.17.3e-23100.00hypothetical protein Csa_7G104290 [Cucumis sativus][more]
BLAST of CsaV3_7G012690.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G012690.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G012690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8C2|A0A0A0K8C2_CUCSA4.8e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G012690CsaV3_7G012690gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G012690.1.cds2CsaV3_7G012690.1.cds2CDS
CsaV3_7G012690.1.cds1CsaV3_7G012690.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G012690.1.exon2CsaV3_7G012690.1.exon2exon
CsaV3_7G012690.1.exon1CsaV3_7G012690.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G012690.1CsaV3_7G012690.1-proteinpolypeptide