CsaV3_7G011570.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011570.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 6402025 .. 6405101 (+)
Sequence length251
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACACTCCAAATCGCACCGCGATCAAAACGGTGAAGTAGTGGGAATAGGATGCACGTTAGTTACAACCTTGAAATTTTCTTATCTCAAATCTTATTCTCAACCCCTTTTAAACTATTAACAACACTAAAAACGCAACAATGCTCAATGTAACGCTAAGCAAAATAAATACAAACCAAAATGTATACTTTATTAATAACAAATATTTCATATATTATTACAATACTTTGACTAAATAACCAATGCTTGACCATTTCCAAAACGTAAGTTTAAAAGACTCTTCGTGAGTCTAAAAAACTTAGTGAGGTTTTATGAAAACCTTTCGCAACATTTTTTCATAATCATATCACAAAAATAATATTAAATCATTTAAACATACCGAAAAATCATTTTGTTTCGTATAAATCTTTCTTTATGCTTAACAAATCATTCATTTTGCCAATGATCTCGAATCGTTCTCTACGCTTGGTCTCATTACCTCGCGTTTAGACTACTGTATCAACAGCATCTGAGAACAAACATATTCTTCTTTATTGCTCGGACCGCTAAGCTTTATACACTCATTTCAACGTATAAGCTAGCTTCTTATCACCATATAGGCCGTACACCCCATGGTGACCCTGACTTTTTATGTGTACATAAAGTTAGCATCATCTCAAAGAAAAATAGTATTGAAATCATAGTCACCAAATCAAGCTTTAACATTATAAATCATTCTTGAAAACATAACTTTTCATAGAAATCTCTTTCAAACATTCTCAATTGAAATTTTCTTTCAAATCAGTAAAGAGAAATCATAATAAATTTCTTTGCATAAATTTATTTGAGGGAAAAGCAGTCACAAAACTTTACTAAAGAAGTCCTCCTTTTCGCGTGGCTAAAACCAGCAATACTTCAACATTTCAACAAAACTCTCATCATCCCCTCATTAGTTACCCAAATCCTCTTATAAAAGAGCCCTTAAACTTAGTCATGCATAAACTCTTCTCGGTTTGTTAGCTCCTGCTTAAAAATTTACAACTGTAACTTTAATATTCAATCTAGCCACGCTTAAATCTTTAATCTCACACGTTAACCCCTGTCAAATCAGATTTTACATTTTTCTTCTCCAGACCTTGCTTCCTACCTAACCCAAACTGCGGATAACTTCAAGTATTTATCGTGAATAACAATATCACGTGGTTATATTTTCACTATAAGAAACCTTCCACGCTAGCTAACAAACTTTTACTCGCATAAACCTTTTATCGCAAAATTAAACTCCAAGGCTTCCTCGCAGACTTCTTATACGCGAAATACTTGGTTCTTCTCACGAATATCACGCAAAACGCCTAGTCTAACACTCAAAACTTTCATTTCTTAAGATACTCTAAGAATTTTTCTCTTCTTATCGCACAAATTCTTTCACGAACTACCCACACAGCTGCAAAAACGAATACTTAACTATAAAAGATTTTATTGCTTAATCCTTTCAGCGGATTTATTCAAACTCCAACTTCTAAATATTTCAAATTTTACTTCCTTACTCAATTGAGAAATGGGTCTCACAGAATACATATGAAGATGATCAGAACGCGTAACTTATGTTGAAAGTGTTAGGATTTATGTCCTGAAACTCATAGGTTGTAAATATAATTCATTGACCGTTATTAATAAAGTGTTATTATTAGAATAAATGTTATTGCTTATATTATTAGTTTTTTCTTAATAACCCAAATTCAACAAACTAACATCCTAAGTTGTTTGATGAGTGTTAAACAGTATGTAGAGACATACAAGGATCAATGTTCGAGATCAGCTTAAAGGGTTTATAGTATAGAGATAATTATGGGTACCTTATCTTGGTAACACTATGGATACGCCTCACTTTGTATTTGATACAAACGCAAGGATCCAACATGTTCATGCAGGTGACAAGCGAGTGAGGATGTAACACCACAAAACTATTAAGTTAATTTTATTTGTGTTATATTGAATTTTTGGGTGTTATGTGTGAAATTATTTGAATTGTGGAAGTTAAGTGTTTTGGAATGTTGTGCGGTTAAATATGAAATTTGAAATCTTATTGTTGAAGTTGTGATTTTTTGGATTGATTGGTTGGTGAATTAATTTGTAAAGTTGGAAGTATTTTTGAATAATTATTGTTTATGGGTATAAGCAAAGTTATAGAGGAATAAGAATAATTATATTATGGAATAATATAATTATTAAGGAAAATATATTATATTTGTGGGAAAGGAGAAAAGTTAATGATGGTTGAATGGGTTACTAATGAAGCAAGACAAAAAAATTATTTTGAAATAGGAAAAATTGGAGTTCGTTGGAGAAAATAAATAATGATAATAATAATAGTATTGTTATTATTATTATATATATTAAATAAGTCTCTCTCGTTCTGCGTGCCTCATCTTCTCCACCCCACCCATCCTTCTTCAACATTCAAGCCCTAGCCTCCGCCCCTTTCACCGTGCACCTCCAGCCACCGCGAATCCCACAATTGACGCAGCCCCTGCACGACCACGATCGCCCGGACGAACCCTTCTCCACTTCGCATCTCCATCCATCAGCCGTAGCCGTAGCCGCATCGTTCTACCGTTCCAAAGCCATGCCGTTCAATTTCCTTCAGTCGTTCGTGCAGCGTGCTTCACCCGTGCCGAAGTTGATCGTGTGCATTTCCGTCAGCTTCGAGCCTCAGTCGCGTCTCCTAGGGTGAGCTGTCGTTGACGTCAGAGCCGCGTCCCTTCATCGAGTCGCGTGAGCCGTCTTCGTTGGTCCGAGTCGCATGAGCCGTCTTCGTTGAACCGAGCCATTCCGTGTAAGCTGTATGCGAGCCACGCGCAATTGGGCCGTTCCTGTGTGAGCCGTACGCGAGCCGTTAGTCTCAAGACCCGAGCCGAATCCTTGCTAGCCGAGCCACCTTCAGTTTCAGCCGTCTGCAACATATTTAAGCCTTTGGTGAGTTTTTGCTTAGTTTTCGTTGGGTTTGGTACGCCCAAATAATTATTGCTTTGGGTTTTAATTGAGTTAGCAGTTGAATTATGTTGTTTGAAGGTTAAGGTGTGGTTGAGTATTTGA

mRNA sequence

ATGTCACACTCCAAATCGCACCGCGATCAAAACGCCCCTGCACGACCACGATCGCCCGGACGAACCCTTCTCCACTTCGCATCTCCATCCATCAGCCGTAGCCGTAGCCGCATCGTTCTACCGTTCCAAAGCCATGCCGTTCAATTTCCTTCAGTCGTTCGTGCAGCGTGCTTCACCCGTGCCGAAGTTGATCGTGTGCATTTCCGTCAGCTTCGAGCCTCAGTCGCGTCTCCTAGGGTGAGCTGTCGTTG

Coding sequence (CDS)

ATGTCACACTCCAAATCGCACCGCGATCAAAACGCCCCTGCACGACCACGATCGCCCGGACGAACCCTTCTCCACTTCGCATCTCCATCCATCAGCCGTAGCCGTAGCCGCATCGTTCTACCGTTCCAAAGCCATGCCGTTCAATTTCCTTCAGTCGTTCGTGCAGCGTGCTTCACCCGTGCCGAAGTTGATCGTGTGCATTTCCGTCAGCTTCGAGCCTCAGTCGCGTCTCCTAGGGTGAGCTGTCGTTG

Protein sequence

MSHSKSHRDQNAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQLRASVASPRVSCRX
Homology
[Close]
BLAST of CsaV3_7G011570.1 vs. NCBI nr
Match: KGN44046.1 (hypothetical protein Csa_7G133920 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 5.7e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MSHSKSHRDQNAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTR 60
          MSHSKSHRDQNAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTR
Sbjct: 1  MSHSKSHRDQNAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTR 60

Query: 61 AEVDRVHFRQLRASVASPR 80
          AEVDRVHFRQLRASVASPR
Sbjct: 61 AEVDRVHFRQLRASVASPR 79

[Close]
BLAST of CsaV3_7G011570.1 vs. TrEMBL
Match: tr|A0A0A0K8E1|A0A0A0K8E1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G133920 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.7e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MSHSKSHRDQNAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTR 60
          MSHSKSHRDQNAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTR
Sbjct: 1  MSHSKSHRDQNAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTR 60

Query: 61 AEVDRVHFRQLRASVASPR 80
          AEVDRVHFRQLRASVASPR
Sbjct: 61 AEVDRVHFRQLRASVASPR 79

The following BLAST results are available for this feature:
BLAST of CsaV3_7G011570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44046.15.7e-35100.00hypothetical protein Csa_7G133920 [Cucumis sativus][more]
BLAST of CsaV3_7G011570.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011570.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8E1|A0A0A0K8E1_CUCSA3.7e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G133920 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G011570CsaV3_7G011570gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011570.1.exon1CsaV3_7G011570.1.exon1exon
CsaV3_7G011570.1.exon2CsaV3_7G011570.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011570.1.cds1CsaV3_7G011570.1.cds1CDS
CsaV3_7G011570.1.cds2CsaV3_7G011570.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G011570.1CsaV3_7G011570.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24