CsaV3_7G006780.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006780.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 4213745 .. 4214744 (+)
Sequence length324
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTAATTCAATTGGTGATTAAAACTCGACTGAGTGTTTGCATTTGACATATCATTGAAGTAGATGACTCACTCACACCATTTAGATATACACCAATAGTTGAGGAAGTTTATTACATCGTTATTCATGTTATCTCATTATTTGTGTTAACTTATATTTCTCGTAAGATAACTACAGCCGATATTCACGGAAAGTAATTTGTTTGAGGAGCTTTCTCACCCGAAACAACTTTATCTCCCTCCCTTTATATCCCCCACTCCCATACACATCTCTCACAAAACTCCCTTCCAACTTCACAACCTCTCTCTCTCTCCACATCCATCAATGGCTTCCCTCCCCATCACACTTATGGCACTAACGGCCCTATTCCTCATCACCTCCACCTTCGCTCAGTCTCCAGCCCCGTCGCCCAAGAAATCACACCACCCCCACTCCCACTCTCCCTCTCCCCATAATTCCCCTATCCTTTCTCACAAATCGGTGTCTTCACCTTCGCCTTCACCGTCGCCTTCTCCAGTCGCTTCTTCCTCACTCCCTCCGGCCAATGCTCTTGCTCCTGCTCTTCTCTTTAATGATGCTATTACCAACACTTTCGCTGTCTCGGCTTCTCTCTTCACCGCCGTCTCCGCCGCTGCTTTCCTCTTCTAGATCTCCACTCCTTCTCCTTTCTATGTGCTAATTACACATTTCTCTATTCCCTCTTTTTAAATATTTTTGCTCGCATAGTTTCTAAGGCATGGTGGAGTTTTGAGTTTGTAAAACATTTTCTTCCTTATTTGAATTTATCATATAAACTTTATTTCTATTTATTCTGATTAACTCATATCGATTTGAATTTTTTAGTCGTGTTTGCTCCAATGAAAACGTAATACATCAATAGTATTAAGAAGAGTAAACCCTATTTGATTACTTGACATCCGAAGCACATCTTACATGGTATATTACTAATATTGTCATGATCATTACTCTTAAGACCTTTCACCTAAAAGATTATCAATT

mRNA sequence

ATGGCTTCCCTCCCCATCACACTTATGGCACTAACGGCCCTATTCCTCATCACCTCCACCTTCGCTCAGTCTCCAGCCCCGTCGCCCAAGAAATCACACCACCCCCACTCCCACTCTCCCTCTCCCCATAATTCCCCTATCCTTTCTCACAAATCGGTGTCTTCACCTTCGCCTTCACCGTCGCCTTCTCCAGTCGCTTCTTCCTCACTCCCTCCGGCCAATGCTCTTGCTCCTGCTCTTCTCTTTAATGATGCTATTACCAACACTTTCGCTGTCTCGGCTTCTCTCTTCACCGCCGTCTCCGCCGCTGCTTTCCTCTTCTAG

Coding sequence (CDS)

ATGGCTTCCCTCCCCATCACACTTATGGCACTAACGGCCCTATTCCTCATCACCTCCACCTTCGCTCAGTCTCCAGCCCCGTCGCCCAAGAAATCACACCACCCCCACTCCCACTCTCCCTCTCCCCATAATTCCCCTATCCTTTCTCACAAATCGGTGTCTTCACCTTCGCCTTCACCGTCGCCTTCTCCAGTCGCTTCTTCCTCACTCCCTCCGGCCAATGCTCTTGCTCCTGCTCTTCTCTTTAATGATGCTATTACCAACACTTTCGCTGTCTCGGCTTCTCTCTTCACCGCCGTCTCCGCCGCTGCTTTCCTCTTCTAG

Protein sequence

MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSPSPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF
Homology
[Close]
BLAST of CsaV3_7G006780.1 vs. NCBI nr
Match: XP_011659718.1 (PREDICTED: classical arabinogalactan protein 10-like [Cucumis sativus] >KGN43746.1 hypothetical protein Csa_7G064070 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MASLPITLMALTALFLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASLPITLMALTALFLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASLPITLMALTALFLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 108
           XXXXXXXXXLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF
Sbjct: 61  XXXXXXXXXLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

[Close]
BLAST of CsaV3_7G006780.1 vs. TrEMBL
Match: tr|A0A0A0K7F2|A0A0A0K7F2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MASLPITLMALTALFLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASLPITLMALTALFLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASLPITLMALTALFLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 108
           XXXXXXXXXLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF
Sbjct: 61  XXXXXXXXXLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006780.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659718.13.0e-12100.00PREDICTED: classical arabinogalactan protein 10-like [Cucumis sativus] >KGN43746... [more]
BLAST of CsaV3_7G006780.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006780.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006780.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7F2|A0A0A0K7F2_CUCSA2.0e-12100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G006780CsaV3_7G006780gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G006780.1.exon1CsaV3_7G006780.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G006780.1.cds1CsaV3_7G006780.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G006780.1CsaV3_7G006780.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..56