CsaV3_6G053160.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G053160.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 31022046 .. 31022463 (-)
Sequence length210
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGTGTGAAGTGCAAAAATGGGAATAGAATGATTCGGTGGCGGGGTGATTTAAGGGGTGTCAATGTCATTGGGGTTCAGAGTTGGGCCCTCCCCACAGCCAATCCTGTGCTGTAAATCTGAATCTGTAGCGGCAGAGGAACCTCTACTTAACGCGTGGCCTCTCTCTCTTTCATTTTCCCACTACATGCCCCTCTAGGATTGATTTCCGTCGTCGGTGCTTTCTTTCCTTTTTTTTCTTTTTTTTTTTTCTTTCTTTTGGTAAGAACTCCAGAGTATTGTTTTTTATGTTTTTTTTTTCTTTTTCAATTATCAAATCAGGCCTCTTCTAACTCTACCACCCCCATCCATTTTCCTCCTCATTTCAAACATCCATGACCTGATAGACCTTCGTCTCCATCTCCCCAAGAAATGA

mRNA sequence

ATGGAGGGTGTGAAGTGCAAAAATGGGAATAGAATGATTCGGTGGCGGGGTGATTTAAGGGGTGTCAATGTCATTGGGGTTCAGAGTTGGGCCCTCCCCACAGCCAATCCTGTGCTGCCTCTTCTAACTCTACCACCCCCATCCATTTTCCTCCTCATTTCAAACATCCATGACCTGATAGACCTTCGTCTCCATCTCCCCAAGAAATGA

Coding sequence (CDS)

ATGGAGGGTGTGAAGTGCAAAAATGGGAATAGAATGATTCGGTGGCGGGGTGATTTAAGGGGTGTCAATGTCATTGGGGTTCAGAGTTGGGCCCTCCCCACAGCCAATCCTGTGCTGCCTCTTCTAACTCTACCACCCCCATCCATTTTCCTCCTCATTTCAAACATCCATGACCTGATAGACCTTCGTCTCCATCTCCCCAAGAAATGA

Protein sequence

MEGVKCKNGNRMIRWRGDLRGVNVIGVQSWALPTANPVLPLLTLPPPSIFLLISNIHDLIDLRLHLPKK
Homology
[Close]
BLAST of CsaV3_6G053160.1 vs. NCBI nr
Match: KGN49545.1 (hypothetical protein Csa_6G538740 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 6.4e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MEGVKCKNGNRMIRWRGDLRGVNVIGVQSWALPTANPVLPLLTLPPPSIFLLISNIHDLI 60
          MEGVKCKNGNRMIRWRGDLRGVNVIGVQSWALPTANPVLPLLTLPPPSIFLLISNIHDLI
Sbjct: 1  MEGVKCKNGNRMIRWRGDLRGVNVIGVQSWALPTANPVLPLLTLPPPSIFLLISNIHDLI 60

Query: 61 DLRLHLPKK 70
          DLRLHLPKK
Sbjct: 61 DLRLHLPKK 69

[Close]
BLAST of CsaV3_6G053160.1 vs. TrEMBL
Match: tr|A0A0A0KIL4|A0A0A0KIL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538740 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MEGVKCKNGNRMIRWRGDLRGVNVIGVQSWALPTANPVLPLLTLPPPSIFLLISNIHDLI 60
          MEGVKCKNGNRMIRWRGDLRGVNVIGVQSWALPTANPVLPLLTLPPPSIFLLISNIHDLI
Sbjct: 1  MEGVKCKNGNRMIRWRGDLRGVNVIGVQSWALPTANPVLPLLTLPPPSIFLLISNIHDLI 60

Query: 61 DLRLHLPKK 70
          DLRLHLPKK
Sbjct: 61 DLRLHLPKK 69

The following BLAST results are available for this feature:
BLAST of CsaV3_6G053160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49545.16.4e-32100.00hypothetical protein Csa_6G538740 [Cucumis sativus][more]
BLAST of CsaV3_6G053160.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G053160.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G053160.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KIL4|A0A0A0KIL4_CUCSA4.2e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538740 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G053160CsaV3_6G053160gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G053160.1.cds2CsaV3_6G053160.1.cds2CDS
CsaV3_6G053160.1.cds1CsaV3_6G053160.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G053160.1.exon2CsaV3_6G053160.1.exon2exon
CsaV3_6G053160.1.exon1CsaV3_6G053160.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G053160.1CsaV3_6G053160.1-proteinpolypeptide