CsaV3_6G047970.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G047970.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 28227846 .. 28228352 (+)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGAGAGTGGTGGAGGAGAGCAAACTAATACTAAAAAGGAAAGACTTGCCAAAAACTGTCGAACAAAAAGATGTGAAGAAGTGACAGGAAGAATTAGAACGAAGAAACGAGTGGAAAGGAACGAAAGTTCATGGAAGCGTATGGCAGTCGCACATTTTTTTGTAAACAAATCGATCCTTTCACGTGTGAGTAACATTCTCAAAAGATTACTTTTCTGGTGGTTATTTTTTTCGAGTCATTCCTACAAATTTTCCTCTAGAAAACTCCATTGAAGGTACCAAAGTAATTACTGAGTGAATAATAGCAAAACAAACAATAAAATTAAATTATGTTAAGAGCCCAAAGCCTTATCTGCTTGTCTTCTTCTTCTTCTTCGAGCTCATCTACCATTCTCGAGGTTCAGGCGAGGAATTCTCGAGTTGTTCCTTCGAATTGATTCCGGTTCTGAACAATCTAATCATGGCAATGCATTCCCATTGAGCAAACCAGCTAGTACATAG

mRNA sequence

ATGGAGAAGGAGAGTGGTGGAGGAGAGCAAACTAATACTAAAAAGGAAAGACTTGCCAAAAACTGTCGAACAAAAAGATGTGAAGAAGTGACAGGAAGAATTAGAACGAAGAAACGAGTGGAAAGGAACGAAAGTTCATGGAAGCAGCCCAAAGCCTTATCTGCTTGTCTTCTTCTTCTTCTTCGAGCTCATCTACCATTCTCGAGGTTCAGGCGAGGAATTCTCGAGTTGTTCCTTCGAATTGATTCCGGTTCTGAACAATCTAATCATGGCAATGCATTCCCATTGAGCAAACCAGCTAGTACATAG

Coding sequence (CDS)

ATGGAGAAGGAGAGTGGTGGAGGAGAGCAAACTAATACTAAAAAGGAAAGACTTGCCAAAAACTGTCGAACAAAAAGATGTGAAGAAGTGACAGGAAGAATTAGAACGAAGAAACGAGTGGAAAGGAACGAAAGTTCATGGAAGCAGCCCAAAGCCTTATCTGCTTGTCTTCTTCTTCTTCTTCGAGCTCATCTACCATTCTCGAGGTTCAGGCGAGGAATTCTCGAGTTGTTCCTTCGAATTGATTCCGGTTCTGAACAATCTAATCATGGCAATGCATTCCCATTGAGCAAACCAGCTAGTACATAG

Protein sequence

MEKESGGGEQTNTKKERLAKNCRTKRCEEVTGRIRTKKRVERNESSWKQPKALSACLLLLLRAHLPFSRFRRGILELFLRIDSGSEQSNHGNAFPLSKPAST
Homology
[Close]
BLAST of CsaV3_6G047970.1 vs. NCBI nr
Match: KGN49007.1 (hypothetical protein Csa_6G510250 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MEKESGGGEQTNTKKERLAKNCRTKRCEEVTGRIRTKKRVERNESSWKQPKALSACLLLL 60
           MEKESGGGEQTNTKKERLAKNCRTKRCEEVTGRIRTKKRVERNESSWKQPKALSACLLLL
Sbjct: 1   MEKESGGGEQTNTKKERLAKNCRTKRCEEVTGRIRTKKRVERNESSWKQPKALSACLLLL 60

Query: 61  LRAHLPFSRFRRGILELFLRIDSGSEQSNHGNAFPLSKPAST 103
           LRAHLPFSRFRRGILELFLRIDSGSEQSNHGNAFPLSKPAST
Sbjct: 61  LRAHLPFSRFRRGILELFLRIDSGSEQSNHGNAFPLSKPAST 102

[Close]
BLAST of CsaV3_6G047970.1 vs. TrEMBL
Match: tr|A0A0A0KL05|A0A0A0KL05_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510250 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MEKESGGGEQTNTKKERLAKNCRTKRCEEVTGRIRTKKRVERNESSWKQPKALSACLLLL 60
           MEKESGGGEQTNTKKERLAKNCRTKRCEEVTGRIRTKKRVERNESSWKQPKALSACLLLL
Sbjct: 1   MEKESGGGEQTNTKKERLAKNCRTKRCEEVTGRIRTKKRVERNESSWKQPKALSACLLLL 60

Query: 61  LRAHLPFSRFRRGILELFLRIDSGSEQSNHGNAFPLSKPAST 103
           LRAHLPFSRFRRGILELFLRIDSGSEQSNHGNAFPLSKPAST
Sbjct: 61  LRAHLPFSRFRRGILELFLRIDSGSEQSNHGNAFPLSKPAST 102

The following BLAST results are available for this feature:
BLAST of CsaV3_6G047970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49007.13.2e-48100.00hypothetical protein Csa_6G510250 [Cucumis sativus][more]
BLAST of CsaV3_6G047970.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G047970.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G047970.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KL05|A0A0A0KL05_CUCSA2.1e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G047970CsaV3_6G047970gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G047970.1.exon1CsaV3_6G047970.1.exon1exon
CsaV3_6G047970.1.exon2CsaV3_6G047970.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G047970.1.cds1CsaV3_6G047970.1.cds1CDS
CsaV3_6G047970.1.cds2CsaV3_6G047970.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G047970.1CsaV3_6G047970.1-proteinpolypeptide