CsaV3_6G044310.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAAAATCGCCTTTTCTTTCCATTTCTCTTATCAATTATTAAACAAACAAATTCCCTTCCTCTTCACGTCACACCCCACCAGCTACCATTCCCTTTTTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTGCTCTCCCTTTTTAATCCCACTGTATGAGCCTTCCCCTTTTTCACAATTATCATTTTGATCTTATCATCATCCAATTATTGTTGTTATTATTAATATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGGTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCCTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAAAATCAAACACCTCCATACTTAATAAAATATTATTCACCTTCTATTGTCAATTACCTTCTTTTAAGTCTTATGTTAGCTCACAAATATACGTATTTCAAATTTGTTAGATAAAATATTTG ATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGGTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCCTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAA ATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGGTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCCTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAA MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFSCKTIHSCDITDNSFFKLPRDTIHVSTWK
BLAST of CsaV3_6G044310.1 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_6G495870 [Cucumis sativus]) HSP 1 Score: 315.8 bits (808), Expect = 7.6e-83 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. NCBI nr
Match: EXC12618.1 (hypothetical protein L484_012996 [Morus notabilis]) HSP 1 Score: 83.6 bits (205), Expect = 6.3e-13 Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. NCBI nr
Match: PON40333.1 (hypothetical protein PanWU01x14_298200 [Parasponia andersonii]) HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13 Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. NCBI nr
Match: POO00665.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientalis]) HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12 Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. NCBI nr
Match: XP_018837260.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Juglans regia]) HSP 1 Score: 70.1 bits (170), Expect = 7.2e-09 Identity = 60/153 (39.22%), Postives = 77/153 (50.33%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. TrEMBL
Match: tr|A0A0A0KGJ1|A0A0A0KGJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 5.0e-83 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. TrEMBL
Match: tr|W9RVC8|W9RVC8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13 Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. TrEMBL
Match: tr|A0A2P5AUW8|A0A2P5AUW8_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298200 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 5.5e-13 Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. TrEMBL
Match: tr|A0A2P5FS81|A0A2P5FS81_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_032960 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 9.3e-13 Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = 0
BLAST of CsaV3_6G044310.1 vs. TrEMBL
Match: tr|A0A2I4G031|A0A2I4G031_9ROSI (protein FAR1-RELATED SEQUENCE 5-like OS=Juglans regia OX=51240 GN=LOC109003543 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.8e-09 Identity = 60/153 (39.22%), Postives = 77/153 (50.33%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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