CsaV3_6G043730.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G043730.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 25797296 .. 25798174 (+)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGATATGGTGACATGTGAGGGGGAGTTGTTGAGTGTTTTGACTGGGTGTAGACCTAACAAAGCCAAAGCGTATAGGATTCAGTCCAACAACTGCTCTCTCTCTCACCTCACGCACGAGCCGTCGTTTTGGCAAAGTATGAACGCGTTGACCCTACCGTTAATCCTCTTCCTGCCGGAGCAACCGTCGCGGCATAATCAAATTTCTCCACTACTACTAAAGCAACTTCATTTCAAATTCATCAAAACCTTACCCAAATTTCCTTACGGTTTTCCCCATTCCTTATACACCTTCTCTTCCCTTTCCGGAATAAAACCCATCCAACCAATCCCAGGGAAAAGGATAGAGCTGAATTCATACGCTTAATGCTCAAACTCGGTGACTGCGACTACTAGACGCGGTTAGATTTCCCATCACTTTCCATGAAATTTTCTCTTACTTGTCTCGGAGAGATTTAAATTGTGGTTTTTTGTTTTTTCCATTAAATTTAGGGTTTTCGTTTATTTCTTTGGTATTGATTCGTTCCATCTTACTTGTCTCATCCTCGAGCTTCCGATCAATTTTATTTTTCTTTCCAACGATGCTTTTGATTGAAAGTTACAACGAATTTTCCGTAATGGACTGTTCACAATTGTTTCTTGTAAATTTCTATGTTGTAATAGATGAACCCTAGCCCTTGTAAAGAGGGAGAAAGAAGATCTGTGACATGAATTGCAATTGAAACAGATTACTAAAGTTTTAGTTAGCGGTGATTGCTTATAATCATTCCTGTTTTACATTTGTCTAGGTTCTGCAAAGAGAATTATTAAATTCGAGATCTATAGATCAAACAGGGACTTGTTCCTGCGGCTAGTTGGCTCAAGATATCCCGAGGTA

mRNA sequence

ATGGGGGATATGGTGACATGTGAGGGGGAGTTGTTGAGTGTTTTGACTGGGTGTAGACCTAACAAAGCCAAAGCGTATAGGATTCAGTCCAACAACTGCTCTCTCTCTCACCTCACGCACGAGCCGTCGTTTTGGCAAAGTTCTGCAAAGAGAATTATTAAATTCGAGATCTATAGATCAAACAGGGACTTGTTCCTGCGGCTAGTTGGCTCAAGATATCCCGAGGTA

Coding sequence (CDS)

ATGGGGGATATGGTGACATGTGAGGGGGAGTTGTTGAGTGTTTTGACTGGGTGTAGACCTAACAAAGCCAAAGCGTATAGGATTCAGTCCAACAACTGCTCTCTCTCTCACCTCACGCACGAGCCGTCGTTTTGGCAAAGTTCTGCAAAGAGAATTATTAAATTCGAGATCTATAGATCAAACAGGGACTTGTTCCTGCGGCTAGTTGGCTCAAGATATCCCGAGGTA

Protein sequence

MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRSNRDLFLRLVGSRYPEV
Homology
[Close]
BLAST of CsaV3_6G043730.1 vs. NCBI nr
Match: KGN48573.1 (hypothetical protein Csa_6G493320 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 4.6e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60
          MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS
Sbjct: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60

Query: 61 NRDLFLRLVGSRYPE 76
          NRDLFLRLVGSRYPE
Sbjct: 61 NRDLFLRLVGSRYPE 75

[Close]
BLAST of CsaV3_6G043730.1 vs. TrEMBL
Match: tr|A0A0A0KGF4|A0A0A0KGF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G493320 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60
          MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS
Sbjct: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60

Query: 61 NRDLFLRLVGSRYPE 76
          NRDLFLRLVGSRYPE
Sbjct: 61 NRDLFLRLVGSRYPE 75

The following BLAST results are available for this feature:
BLAST of CsaV3_6G043730.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48573.14.6e-36100.00hypothetical protein Csa_6G493320 [Cucumis sativus][more]
BLAST of CsaV3_6G043730.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G043730.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G043730.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGF4|A0A0A0KGF4_CUCSA3.1e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G493320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G043730CsaV3_6G043730gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G043730.1.exon1CsaV3_6G043730.1.exon1exon
CsaV3_6G043730.1.exon2CsaV3_6G043730.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G043730.1.cds1CsaV3_6G043730.1.cds1CDS
CsaV3_6G043730.1.cds2CsaV3_6G043730.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G043730.1CsaV3_6G043730.1-proteinpolypeptide