CsaV3_6G042570.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G042570.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transcription termination factor like
Location	chr6 : 24990355 .. 24992609 (-)
Sequence length	1509

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCGCAGAGCTTCAATCTTGGTAAGTGGCTTCCATCCCTTCTCTTCTGCAATTTTTTATTAGAAGACACTTGACACTTGCACAAAGAATTAGTAAACAAGTCTGAAATTTTGAAACACCCAAAACCAAGGCAAGCTTAGTGATTCGTATATAAAGATGTAAAGCTCATGTTTTTGTTGCTAGTAATGAAACTGTGGGGTCAAATTTGGCCGAGGTAGTTCCCAGCATTTATTCACATTCTATGATTATTGCTTTTGTTGTAATGGAAGGGGTTCACTTTCCTGGGGGATTTTGTAAATGGAGTTTCTTTCTTTTTGGTTCTTAACTAGCTCTGCGGCTGATTGCACAAGTGGCCGTGCTTTACGCTTGATCGAATTATTGCGCCAATTCTTAGAGATGAGAGCTGCCCCCGTCCCTATCTCCTTTTTGCCAAATGGTAGTCACATCACTACTCAAAGGTACCGTTGGACTCGTTATTTTTTAGCTTGAATGAATATATCTTCTCTTATTTAACAGATTTGCATGTTTTTTTCTCCCGATGGTTTGTTGCGAGATATATTCAGTGAATAGTGTTGAGTTATAATGTGTGCACAAGCTTCCCTTTCTTTGATTCTTTTTCTGTCAATTCTCTCCATGCTGAGAATGTGTCATCCAGAAGTTTTGTTTTATATAGGGTTCAGGTTTCGTTCCAAAGGAAACTCTTTTCTTGCCGATCAAGATCTGGTTAGTGCTTCAGTTTGAGGTTTCGTTGAGTTGTCATTAACTTCTTGTGGCTGTTTAATCTCTTGATGAATTCGTGTGGTCGTCTTTTGACCATGCTAAGTACTGTGTTTTGATGATCTACTATGCAGATTCTGAGATAGATGGATCAGCCAACTTAAAGGTAGTGTCTCCAGCCCTTCTAACAGCAGAAAAAGAAGAGGCCAAGGCAGTTTTAACCTTGTTTTTAAAGAAGCAAGGTCTAAGCAATGCAATTGCTGCAAGAACAATAAACAAGTCCGATAGCTTCATCGATCATCTTCTCTTAAGGCTTCATTTGATTCACAAATCTCGGTATCTAGTAGGTTCGACTTCAATGTACTTGTATCACCGATCACATTGAATTTGATTTAGTTGGATGTAGACTGGCATTGCCAGAAATTATAACCTAGTTCACATGACTATGCAGGACGAGAGTTGACGACACTTGAAATTAGAGATGCTTTGAATCCTTATCTTGAGTCCCTTTTTGAAGAGCATGGGACTCATCTTGTGCATGCTGTGGAAAACTTTCCTAGCCCTTCTATTAAGGAAAAGACTGCTACACCAGTTCCTGTCTCAAATTCAACAATTGACACGAAGAAGCTAAAAGCCATCTCTCGAGTGAGTGAACTAGGTCCTACTGGAGATCTCCGACCAGAGATTCTTTACCTGATTGAGCATGGCTTAAATCTTGATCAGATTAAAGAAATTACTCGCAGATTCCCATCTTTTGCTTACTACAGCTTGGAGGGAAAAATAAAGCCTGTGATCGAGTTTTTTCTTGATCTTGGGGTGCCAAAATCTGATATCCCTATTATCCTCTACAAGAGGCCTCAGTTATGTGGAATTAGTCTGAGTGAAAATTTAAAACCAACGATGAAATTCTTAGAAAATTTGGGTGTGGACAAGAAAAAATGGGCGAAAGTGATTTACCGTTTTCCAGCAATTCTCACCTACAGCAAACAGAAGGTCGAGACAACTATTAGTTTCCTCTATGAATTGGGACTCTCAGAGGAGAGGGTTGGTAAAGTATTGACCCGTTGTCCAAATATCACAAGTTATAGTGTTGAGGAAAAATTAAGGCCCACGGCCGAATATTTTCACACTCTGGGAGTCGATGTTGCTGTCCTTCTGTATCGTTGCCCACAGACATTCGGTCTCAGTATTGAGGCTAATTTGAAACCAGTGACACAATTTTTCTTGGAGAGAGGTTATAGCATGGAGGATGTTGGAACCATGACCTCAAGATATGCAGCCTTGTATTCTTTCAGCTTAGCTGATAATTTAGTGCCTAAATGGGATTTCTTTCTAACCATGGGATACTCAAAAGCAGAGCTAATCAAATTCCCCCAATATTTTGGTTACAGCTTGGAGGGGAGAATTAAACCAAGGTATGCAATTATGAAAAATAGCCAGGTGATGTTGTTACTGAACCAGTTGTTAACATTATCAGAAAGCAATTTCAACAAGGCAGTGATAAAGAAAGTGAACAAGTTGCTTCTCAAGAATTGA

mRNA sequence

ATGGAGTTTCTTTCTTTTTGGTTCTTAACTAGCTCTGCGGCTGATTGCACAAGTGGCCGTGCTTTACGCTTGATCGAATTATTGCGCCAATTCTTAGAGATGAGAGCTGCCCCCGTCCCTATCTCCTTTTTGCCAAATGGTAGTCACATCACTACTCAAAGGGTTCAGGTTTCGTTCCAAAGGAAACTCTTTTCTTGCCGATCAAGATCTGATTCTGAGATAGATGGATCAGCCAACTTAAAGGTAGTGTCTCCAGCCCTTCTAACAGCAGAAAAAGAAGAGGCCAAGGCAGTTTTAACCTTGTTTTTAAAGAAGCAAGGTCTAAGCAATGCAATTGCTGCAAGAACAATAAACAAGTCCGATAGCTTCATCGATCATCTTCTCTTAAGGCTTCATTTGATTCACAAATCTCGGTATCTAGTAGGACGAGAGTTGACGACACTTGAAATTAGAGATGCTTTGAATCCTTATCTTGAGTCCCTTTTTGAAGAGCATGGGACTCATCTTGTGCATGCTGTGGAAAACTTTCCTAGCCCTTCTATTAAGGAAAAGACTGCTACACCAGTTCCTGTCTCAAATTCAACAATTGACACGAAGAAGCTAAAAGCCATCTCTCGAGTGAGTGAACTAGGTCCTACTGGAGATCTCCGACCAGAGATTCTTTACCTGATTGAGCATGGCTTAAATCTTGATCAGATTAAAGAAATTACTCGCAGATTCCCATCTTTTGCTTACTACAGCTTGGAGGGAAAAATAAAGCCTGTGATCGAGTTTTTTCTTGATCTTGGGGTGCCAAAATCTGATATCCCTATTATCCTCTACAAGAGGCCTCAGTTATGTGGAATTAGTCTGAGTGAAAATTTAAAACCAACGATGAAATTCTTAGAAAATTTGGGTGTGGACAAGAAAAAATGGGCGAAAGTGATTTACCGTTTTCCAGCAATTCTCACCTACAGCAAACAGAAGGTCGAGACAACTATTAGTTTCCTCTATGAATTGGGACTCTCAGAGGAGAGGGTTGGTAAAGTATTGACCCGTTGTCCAAATATCACAAGTTATAGTGTTGAGGAAAAATTAAGGCCCACGGCCGAATATTTTCACACTCTGGGAGTCGATGTTGCTGTCCTTCTGTATCGTTGCCCACAGACATTCGGTCTCAGTATTGAGGCTAATTTGAAACCAGTGACACAATTTTTCTTGGAGAGAGGTTATAGCATGGAGGATGTTGGAACCATGACCTCAAGATATGCAGCCTTGTATTCTTTCAGCTTAGCTGATAATTTAGTGCCTAAATGGGATTTCTTTCTAACCATGGGATACTCAAAAGCAGAGCTAATCAAATTCCCCCAATATTTTGGTTACAGCTTGGAGGGGAGAATTAAACCAAGGTATGCAATTATGAAAAATAGCCAGGTGATGTTGTTACTGAACCAGTTGTTAACATTATCAGAAAGCAATTTCAACAAGGCAGTGATAAAGAAAGTGAACAAGTTGCTTCTCAAGAATTGA

Coding sequence (CDS)

ATGGAGTTTCTTTCTTTTTGGTTCTTAACTAGCTCTGCGGCTGATTGCACAAGTGGCCGTGCTTTACGCTTGATCGAATTATTGCGCCAATTCTTAGAGATGAGAGCTGCCCCCGTCCCTATCTCCTTTTTGCCAAATGGTAGTCACATCACTACTCAAAGGGTTCAGGTTTCGTTCCAAAGGAAACTCTTTTCTTGCCGATCAAGATCTGATTCTGAGATAGATGGATCAGCCAACTTAAAGGTAGTGTCTCCAGCCCTTCTAACAGCAGAAAAAGAAGAGGCCAAGGCAGTTTTAACCTTGTTTTTAAAGAAGCAAGGTCTAAGCAATGCAATTGCTGCAAGAACAATAAACAAGTCCGATAGCTTCATCGATCATCTTCTCTTAAGGCTTCATTTGATTCACAAATCTCGGTATCTAGTAGGACGAGAGTTGACGACACTTGAAATTAGAGATGCTTTGAATCCTTATCTTGAGTCCCTTTTTGAAGAGCATGGGACTCATCTTGTGCATGCTGTGGAAAACTTTCCTAGCCCTTCTATTAAGGAAAAGACTGCTACACCAGTTCCTGTCTCAAATTCAACAATTGACACGAAGAAGCTAAAAGCCATCTCTCGAGTGAGTGAACTAGGTCCTACTGGAGATCTCCGACCAGAGATTCTTTACCTGATTGAGCATGGCTTAAATCTTGATCAGATTAAAGAAATTACTCGCAGATTCCCATCTTTTGCTTACTACAGCTTGGAGGGAAAAATAAAGCCTGTGATCGAGTTTTTTCTTGATCTTGGGGTGCCAAAATCTGATATCCCTATTATCCTCTACAAGAGGCCTCAGTTATGTGGAATTAGTCTGAGTGAAAATTTAAAACCAACGATGAAATTCTTAGAAAATTTGGGTGTGGACAAGAAAAAATGGGCGAAAGTGATTTACCGTTTTCCAGCAATTCTCACCTACAGCAAACAGAAGGTCGAGACAACTATTAGTTTCCTCTATGAATTGGGACTCTCAGAGGAGAGGGTTGGTAAAGTATTGACCCGTTGTCCAAATATCACAAGTTATAGTGTTGAGGAAAAATTAAGGCCCACGGCCGAATATTTTCACACTCTGGGAGTCGATGTTGCTGTCCTTCTGTATCGTTGCCCACAGACATTCGGTCTCAGTATTGAGGCTAATTTGAAACCAGTGACACAATTTTTCTTGGAGAGAGGTTATAGCATGGAGGATGTTGGAACCATGACCTCAAGATATGCAGCCTTGTATTCTTTCAGCTTAGCTGATAATTTAGTGCCTAAATGGGATTTCTTTCTAACCATGGGATACTCAAAAGCAGAGCTAATCAAATTCCCCCAATATTTTGGTTACAGCTTGGAGGGGAGAATTAAACCAAGGTATGCAATTATGAAAAATAGCCAGGTGATGTTGTTACTGAACCAGTTGTTAACATTATCAGAAAGCAATTTCAACAAGGCAGTGATAAAGAAAGTGAACAAGTTGCTTCTCAAGAATTGA

Protein sequence

MEFLSFWFLTSSAADCTSGRALRLIELLRQFLEMRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLEGKIKPVIEFFLDLGVPKSDIPIILYKRPQLCGISLSENLKPTMKFLENLGVDKKKWAKVIYRFPAILTYSKQKVETTISFLYELGLSEERVGKVLTRCPNITSYSVEEKLRPTAEYFHTLGVDVAVLLYRCPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMTSRYAALYSFSLADNLVPKWDFFLTMGYSKAELIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN

Homology

[Close]

BLAST of CsaV3_6G042570.1 vs. NCBI nr
Match: KGN48453.1 (hypothetical protein Csa_6G487740 [Cucumis sativus])

HSP 1 Score: 556.2 bits (1432), Expect = 1.1e-154
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0


Query: 12  SAADCTSGRALRLIELLRQFLEMRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSD 71
           SAADCTSGRALRLIELLRQFLEMRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSD
Sbjct: 79  SAADCTSGRALRLIELLRQFLEMRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSD 138

Query: 72  SEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRL 131
           SEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRL
Sbjct: 139 SEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRL 198

Query: 132 HLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPV 191
           HLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPV
Sbjct: 199 HLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPV 258

Query: 192 SNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXX 251
           SNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXX
Sbjct: 259 SNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXX 318

Query: 252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 311
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 319 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 378

Query: 312 XXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGV 371
           XXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGV
Sbjct: 379 XXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGV 438

Query: 372 DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXX 431
           DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 439 DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXX 498

Query: 432 XXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAV 491
           XXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAV
Sbjct: 499 XXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAV 558

Query: 492 IKKVNKLLLKN 503
           IKKVNKLLLKN
Sbjct: 559 IKKVNKLLLKN 569

[Close]

BLAST of CsaV3_6G042570.1 vs. NCBI nr
Match: XP_004142030.2 (PREDICTED: uncharacterized protein LOC101203240 [Cucumis sativus])

HSP 1 Score: 515.0 bits (1325), Expect = 2.9e-142
Identity = 469/469 (100.00%), Postives = 469/469 (100.00%), Query Frame = 0


Query: 34  MRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEIDGSANLKVVSPALLTAEKE 93
           MRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEIDGSANLKVVSPALLTAEKE
Sbjct: 1   MRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEIDGSANLKVVSPALLTAEKE 60

Query: 94  EAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDA 153
           EAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDA
Sbjct: 61  EAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDA 120

Query: 154 LNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPT 213
           LNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPT
Sbjct: 121 LNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPT 180

Query: 214 GDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX 273
           GDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 274 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX 333
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX 300

Query: 334 XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXX 393
           XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXX 360

Query: 394 XXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG 453
           XXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG
Sbjct: 361 XXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG 420

Query: 454 YSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN 503
           YSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN
Sbjct: 421 YSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN 469

[Close]

BLAST of CsaV3_6G042570.1 vs. NCBI nr
Match: XP_008440165.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo])

HSP 1 Score: 477.6 bits (1228), Expect = 5.1e-131
Identity = 441/469 (94.03%), Postives = 452/469 (96.38%), Query Frame = 0


Query: 34  MRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEIDGSANLKVVSPALLTAEKE 93
           MRAAP  ISFLPNGSHITTQRVQVSFQRKLFSCR++SDSEIDGSANLKVVSPALLTAEKE
Sbjct: 1   MRAAPAHISFLPNGSHITTQRVQVSFQRKLFSCRAKSDSEIDGSANLKVVSPALLTAEKE 60

Query: 94  EAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDA 153
           EAKAVLTLFLKKQGLS AIAARTINKSDSF++HL+L LHLIHKSRYLVGRELTTLEIRDA
Sbjct: 61  EAKAVLTLFLKKQGLSTAIAARTINKSDSFVNHLVLTLHLIHKSRYLVGRELTTLEIRDA 120

Query: 154 LNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPT 213
           LNPYLESLFEEHGTHLVHAVENFP+P IKEKTAT VPVSNSTIDTKKLKAISRVSEL PT
Sbjct: 121 LNPYLESLFEEHGTHLVHAVENFPNPPIKEKTATTVPVSNSTIDTKKLKAISRVSELDPT 180

Query: 214 GDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX 273
           G+LRPEILYLIEHGLNLDQIKEITR+FP+FAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GNLRPEILYLIEHGLNLDQIKEITRKFPAFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 274 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX 333
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX 300

Query: 334 XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXX 393
           XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFH+LGVD   XXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHSLGVDAAVXXXXXXXXXXXXXXXXXX 360

Query: 394 XXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG 453
           XXXXXXXXXXYSME     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG
Sbjct: 361 XXXXXXXXXXYSMEDVRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG 420

Query: 454 YSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN 503
           YSLEGRIKPRYAIMK SQVMLLLNQLLTLSESNF+K VIKKVNKLLLKN
Sbjct: 421 YSLEGRIKPRYAIMKKSQVMLLLNQLLTLSESNFDKVVIKKVNKLLLKN 469

[Close]

BLAST of CsaV3_6G042570.1 vs. NCBI nr
Match: XP_023544699.1 (transcription termination factor MTERF5, chloroplastic isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421.4 bits (1082), Expect = 4.3e-114
Identity = 383/463 (82.72%), Postives = 403/463 (87.04%), Query Frame = 0


Query: 41  ISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEI-DGSANLKVVSPALLTAEKEEAKAVL 100
           I F+PN   I TQRVQVSF RKLFSCR++ DSEI DGS NLKVVSPALLTAEKEEAKAVL
Sbjct: 12  IFFMPNDCLIPTQRVQVSFSRKLFSCRAKFDSEIDDGSVNLKVVSPALLTAEKEEAKAVL 71

Query: 101 TLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLE 160
           TLFLKKQGLSNAIAARTINKSD FI+HLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLE
Sbjct: 72  TLFLKKQGLSNAIAARTINKSDLFINHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLE 131

Query: 161 SLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPE 220
           SLFEEHGTHLVHAVENFP+ SIKEKT T VPVSNSTIDTKKL+A+SRVSELGPTG LRP+
Sbjct: 132 SLFEEHGTHLVHAVENFPNRSIKEKTTTTVPVSNSTIDTKKLRAVSRVSELGPTGKLRPQ 191

Query: 221 ILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 280
           ILYL+EHGL L+QIKEITR+FP+FAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 192 ILYLMEHGLKLEQIKEITRKFPAFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 251

Query: 281 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXXXXXXXX 340
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQ  XXXXXXXXXXXXXXXX
Sbjct: 252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQKVXXXXXXXXXXXXXXXX 311

Query: 341 XXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXXXXXXXX 400
           XXXXXXXXXXXXXXXXX KLRPTAEYFH+LGVDVXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 312 XXXXXXXXXXXXXXXXXXKLRPTAEYFHSLGVDVXXXXXXXXXXXXXXXXXXXXXXXXXX 371

Query: 401 XXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFGYSLEGR 460
           XXXXYSME                                     LIKFPQYFGYSLEGR
Sbjct: 372 XXXXYSMEDVGTMISRYGALYTFSLAENIVPKWDFFLTMEYSKSELIKFPQYFGYSLEGR 431

Query: 461 IKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN 503
           IKPRYAIMK S VMLLLNQLLTLS+++F+ A+ KK+NKL+ KN
Sbjct: 432 IKPRYAIMKKSGVMLLLNQLLTLSDTDFDTALKKKMNKLVPKN 474

[Close]

BLAST of CsaV3_6G042570.1 vs. NCBI nr
Match: XP_022950735.1 (transcription termination factor MTERF5, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 420.6 bits (1080), Expect = 7.4e-114
Identity = 383/463 (82.72%), Postives = 403/463 (87.04%), Query Frame = 0


Query: 41  ISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEI-DGSANLKVVSPALLTAEKEEAKAVL 100
           I F+PN   I TQRVQVSF RKLFSCR++ DSEI DGS NLKVVSPALLTAEKEEAKAVL
Sbjct: 12  IFFMPNDCLIPTQRVQVSFSRKLFSCRAKFDSEIDDGSVNLKVVSPALLTAEKEEAKAVL 71

Query: 101 TLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLE 160
           TLFLKKQGLSNAIAARTINKSD FI+HLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLE
Sbjct: 72  TLFLKKQGLSNAIAARTINKSDLFINHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLE 131

Query: 161 SLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPE 220
           SLFEEHGTHLVHAVENFP+ SIKEKT T VPVSNSTIDTKKL+A+SRVSELGPTG LRP+
Sbjct: 132 SLFEEHGTHLVHAVENFPNRSIKEKTTTTVPVSNSTIDTKKLRAVSRVSELGPTGKLRPQ 191

Query: 221 ILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 280
           ILYL+EHGL L+QIKEITR+FP+FAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 192 ILYLMEHGLKLEQIKEITRKFPAFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 251

Query: 281 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXXXXXXXX 340
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQ  XXXXXXXXXXXXXXXX
Sbjct: 252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQKVXXXXXXXXXXXXXXXX 311

Query: 341 XXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXXXXXXXX 400
           XXXXXXXXXXXXXXXXX KLRPTAEYFH+LGVDVXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 312 XXXXXXXXXXXXXXXXXXKLRPTAEYFHSLGVDVXXXXXXXXXXXXXXXXXXXXXXXXXX 371

Query: 401 XXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFGYSLEGR 460
           XXXXYSME                                     LIKFPQYFGYSLEGR
Sbjct: 372 XXXXYSMEDVGTMISRYGALYTFSLAENIVPKWDFFLTMEYSKSELIKFPQYFGYSLEGR 431

Query: 461 IKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN 503
           IKPR+AIMK S VMLLLNQLLTLS+++F+ A+ KK+NKLL KN
Sbjct: 432 IKPRHAIMKKSGVMLLLNQLLTLSDTDFDTALKKKMNKLLPKN 474

[Close]

BLAST of CsaV3_6G042570.1 vs. TAIR10
Match: AT4G14605.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 232.3 bits (591), Expect = 6.8e-61
Identity = 283/428 (66.12%), Postives = 321/428 (75.00%), Query Frame = 0


Query: 83  VSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVG 142
           V P L+ AEKEEAKAVLTLF KKQGLSN++++R INKSD FIDHL+ RLH +HK+RYLVG
Sbjct: 55  VPPNLIAAEKEEAKAVLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKARYLVG 114

Query: 143 RELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVS--------NS 202
           RELTTLEIRD+L PYLE L EEHG  L   V +FP P  + +     PVS        +S
Sbjct: 115 RELTTLEIRDSLIPYLEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRGDTDS 174

Query: 203 TIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXX 262
             DT+KL+A+SRVSEL   G LRP+ LYL++ GLNL+QIK ITR+F +F YY  XXXXXX
Sbjct: 175 AADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYXXXXXXXX 234

Query: 263 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 322
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 235 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 294

Query: 323 XLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVX 382
           XLTYS+Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+KLRPT EYF +L VD X
Sbjct: 295 XLTYSRQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKLRPTMEYFRSLNVDXX 354

Query: 383 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXX 442
           XXXXXXXXXXXXXXXXXXXXXXXXXX   + ++                           
Sbjct: 355 XXXXXXXXXXXXXXXXXXXXXXXXXXEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDY 414

Query: 443 XXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKK 502
                     L+KFPQ+FGYSL+ RIKPRY +++ S V LLLNQ+L+LS   F K V KK
Sbjct: 415 FQTMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKK 474

[Close]

BLAST of CsaV3_6G042570.1 vs. TAIR10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 47.0 bits (110), Expect = 4.0e-05
Identity = 19/44 (43.18%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 445 LIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFN 489
           L +FPQYF +SLE +IKPR+ ++K   +++ L+++L +S+  FN
Sbjct: 226 LKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFN 269

[Close]

BLAST of CsaV3_6G042570.1 vs. TAIR10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 44.3 bits (103), Expect = 2.6e-04
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 445 LIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNK 498
           LI+FP++F YSLE RI PR+ IM  ++V   L  +L  ++  F + V  KV +
Sbjct: 550 LIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDKVER 602

[Close]

BLAST of CsaV3_6G042570.1 vs. TAIR10
Match: AT2G44020.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 43.1 bits (100), Expect = 5.8e-04
Identity = 19/45 (42.22%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 445 LIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNK 490
           L+++P+YF YSLE RIKPRY  +++  +   LN  L  S+  F +
Sbjct: 413 LVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEE 457

[Close]

BLAST of CsaV3_6G042570.1 vs. TAIR10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 42.4 bits (98), Expect = 9.9e-04
Identity = 17/43 (39.53%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 445 LIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNF 488
           +I++P+YF YSLE RIKPR+ ++K   +   L ++L  ++  F
Sbjct: 532 VIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

[Close]

BLAST of CsaV3_6G042570.1 vs. Swiss-Prot
Match: sp|F4JVI3|MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.2e-59
Identity = 283/428 (66.12%), Postives = 321/428 (75.00%), Query Frame = 0


Query: 83  VSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVG 142
           V P L+ AEKEEAKAVLTLF KKQGLSN++++R INKSD FIDHL+ RLH +HK+RYLVG
Sbjct: 55  VPPNLIAAEKEEAKAVLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKARYLVG 114

Query: 143 RELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVS--------NS 202
           RELTTLEIRD+L PYLE L EEHG  L   V +FP P  + +     PVS        +S
Sbjct: 115 RELTTLEIRDSLIPYLEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRGDTDS 174

Query: 203 TIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXX 262
             DT+KL+A+SRVSEL   G LRP+ LYL++ GLNL+QIK ITR+F +F YY  XXXXXX
Sbjct: 175 AADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYXXXXXXXX 234

Query: 263 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 322
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 235 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 294

Query: 323 XLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVX 382
           XLTYS+Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+KLRPT EYF +L VD X
Sbjct: 295 XLTYSRQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKLRPTMEYFRSLNVDXX 354

Query: 383 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXX 442
           XXXXXXXXXXXXXXXXXXXXXXXXXX   + ++                           
Sbjct: 355 XXXXXXXXXXXXXXXXXXXXXXXXXXEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDY 414

Query: 443 XXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKK 502
                     L+KFPQ+FGYSL+ RIKPRY +++ S V LLLNQ+L+LS   F K V KK
Sbjct: 415 FQTMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKK 474

[Close]

BLAST of CsaV3_6G042570.1 vs. Swiss-Prot
Match: sp|Q84X53|MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 7.3e-04
Identity = 19/44 (43.18%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 445 LIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFN 489
           L +FPQYF +SLE +IKPR+ ++K   +++ L+++L +S+  FN
Sbjct: 227 LKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFN 270

[Close]

BLAST of CsaV3_6G042570.1 vs. TrEMBL
Match: tr|A0A0A0KG07|A0A0A0KG07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487740 PE=4 SV=1)

HSP 1 Score: 556.2 bits (1432), Expect = 7.4e-155
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0


Query: 12  SAADCTSGRALRLIELLRQFLEMRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSD 71
           SAADCTSGRALRLIELLRQFLEMRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSD
Sbjct: 79  SAADCTSGRALRLIELLRQFLEMRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSD 138

Query: 72  SEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRL 131
           SEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRL
Sbjct: 139 SEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRL 198

Query: 132 HLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPV 191
           HLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPV
Sbjct: 199 HLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPV 258

Query: 192 SNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXX 251
           SNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXX
Sbjct: 259 SNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXX 318

Query: 252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 311
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 319 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 378

Query: 312 XXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGV 371
           XXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGV
Sbjct: 379 XXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGV 438

Query: 372 DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXX 431
           DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 439 DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXX 498

Query: 432 XXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAV 491
           XXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAV
Sbjct: 499 XXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAV 558

Query: 492 IKKVNKLLLKN 503
           IKKVNKLLLKN
Sbjct: 559 IKKVNKLLLKN 569

[Close]

BLAST of CsaV3_6G042570.1 vs. TrEMBL
Match: tr|A0A1S3B026|A0A1S3B026_CUCME (transcription termination factor MTERF5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484712 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.4e-131
Identity = 441/469 (94.03%), Postives = 452/469 (96.38%), Query Frame = 0


Query: 34  MRAAPVPISFLPNGSHITTQRVQVSFQRKLFSCRSRSDSEIDGSANLKVVSPALLTAEKE 93
           MRAAP  ISFLPNGSHITTQRVQVSFQRKLFSCR++SDSEIDGSANLKVVSPALLTAEKE
Sbjct: 1   MRAAPAHISFLPNGSHITTQRVQVSFQRKLFSCRAKSDSEIDGSANLKVVSPALLTAEKE 60

Query: 94  EAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDA 153
           EAKAVLTLFLKKQGLS AIAARTINKSDSF++HL+L LHLIHKSRYLVGRELTTLEIRDA
Sbjct: 61  EAKAVLTLFLKKQGLSTAIAARTINKSDSFVNHLVLTLHLIHKSRYLVGRELTTLEIRDA 120

Query: 154 LNPYLESLFEEHGTHLVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPT 213
           LNPYLESLFEEHGTHLVHAVENFP+P IKEKTAT VPVSNSTIDTKKLKAISRVSEL PT
Sbjct: 121 LNPYLESLFEEHGTHLVHAVENFPNPPIKEKTATTVPVSNSTIDTKKLKAISRVSELDPT 180

Query: 214 GDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX 273
           G+LRPEILYLIEHGLNLDQIKEITR+FP+FAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GNLRPEILYLIEHGLNLDQIKEITRKFPAFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 274 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX 333
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXX 300

Query: 334 XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXX 393
           XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFH+LGVD   XXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXEKLRPTAEYFHSLGVDAAVXXXXXXXXXXXXXXXXXX 360

Query: 394 XXXXXXXXXXYSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG 453
           XXXXXXXXXXYSME     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG
Sbjct: 361 XXXXXXXXXXYSMEDVRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFG 420

Query: 454 YSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLLLKN 503
           YSLEGRIKPRYAIMK SQVMLLLNQLLTLSESNF+K VIKKVNKLLLKN
Sbjct: 421 YSLEGRIKPRYAIMKKSQVMLLLNQLLTLSESNFDKVVIKKVNKLLLKN 469

[Close]

BLAST of CsaV3_6G042570.1 vs. TrEMBL
Match: tr|A0A251Q7X9|A0A251Q7X9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G302700 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 5.3e-84
Identity = 362/449 (80.62%), Postives = 399/449 (88.86%), Query Frame = 0


Query: 51  TTQRVQVSFQRKLFSCRSR-SDSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLS 110
           +T R +++F +KLF CR++ +DS IDGS +LK+VSPALL AEKEEA+AVLTLFLKKQGLS
Sbjct: 21  STTRTRITFPQKLFFCRAKFADSGIDGSFSLKLVSPALLAAEKEEARAVLTLFLKKQGLS 80

Query: 111 NAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHL 170
           + +AARTINKSD F++HL+ RLH +HKSRYLVGRELTTLEIR+AL PYLESL +EHG  L
Sbjct: 81  HTVAARTINKSDLFVEHLISRLHAVHKSRYLVGRELTTLEIREALIPYLESLLDEHGVFL 140

Query: 171 VHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLN 230
           V  VE+FP+  +KEK   PV  S S++D KKLKAISRVSE+GP G L P ILYL+E G++
Sbjct: 141 VDLVESFPNAPVKEKPVAPVTKSQSSVDLKKLKAISRVSEIGPAGKLPPHILYLLELGMD 200

Query: 231 LDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 290
           LDQIK I RRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 201 LDQIKGIARRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 260

Query: 291 XXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXX 350
           XXXXXXXXXXXXXXXXXXXXXXXXXXLTYS+Q  XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 261 XXXXXXXXXXXXXXXXXXXXXXXXXXLTYSRQKVXXXXXXXXXXXXXXXXXXXXXXXXXX 320

Query: 351 XXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXX 410
           XXXXXX +KLRPTAEYF +LGVDV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXX
Sbjct: 321 XXXXXXEDKLRPTAEYFLSLGVDVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXX 380

Query: 411 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKN 470
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +KFPQYFGYSLE RIKPRYA+MK 
Sbjct: 381 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKFPQYFGYSLEERIKPRYALMKE 440

Query: 471 SQVMLLLNQLLTLSESNFNKAVIKKVNKL 499
             V LLLNQLL+LS  NF+KA+ KK+ KL
Sbjct: 441 CGVRLLLNQLLSLSTGNFDKALNKKIKKL 469

[Close]

BLAST of CsaV3_6G042570.1 vs. TrEMBL
Match: tr|A0A2I4GZB4|A0A2I4GZB4_9ROSI (transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109012187 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 9.0e-84
Identity = 295/450 (65.56%), Postives = 329/450 (73.11%), Query Frame = 0


Query: 51  TTQRVQVSFQRKLFSCRSR-SDSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLS 110
           TT R+++ F  KLFSC+++ +DS +DG  +LKVV P LL AEKEEAKAVLTLFLKKQGLS
Sbjct: 22  TTSRIRLPFPAKLFSCKAKFADSGVDGLFSLKVVPPTLLAAEKEEAKAVLTLFLKKQGLS 81

Query: 111 NAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHL 170
           NA+AARTINKSD FIDHL+ RLH +HKSRYLVGRELTTLEIRDAL P+LE+L EEHG  +
Sbjct: 82  NAVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALIPFLEALLEEHGNFM 141

Query: 171 VHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLN 230
           V  VENFP P +KEKT  PV   N T+D+KKLKAISRVSE+ P G LRP +LYLIE G++
Sbjct: 142 VDVVENFPCPPVKEKTVVPVSQPNLTLDSKKLKAISRVSEIDPAGKLRPHVLYLIELGMD 201

Query: 231 LDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 290
           L+QIK ITRRFP+FAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 202 LEQIKGITRRFPAFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 261

Query: 291 XXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXXX 350
           XXXXXXXXXXXXXXXXXXXXXXXXXX TYSKQ                            
Sbjct: 262 XXXXXXXXXXXXXXXXXXXXXXXXXXXTYSKQKVETTIKFFYEMDLSAERIGKILTRCPH 321

Query: 351 XXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEXX 410
                  EKLRPTAEYFH+LGVD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ++  
Sbjct: 322 IIGYSVEEKLRPTAEYFHSLGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKEI 381

Query: 411 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMKN 470
                                              L+KFPQYFGYSLE RIKPRYA +K 
Sbjct: 382 RTMISRYGALYTFSLSGNLIPKWEYFLTMDYSRSELVKFPQYFGYSLEERIKPRYARLKE 441

Query: 471 SQVMLLLNQLLTLSESNFNKAVIKKVNKLL 500
             V +LLNQ+L+LS S+F K V KKV K+L
Sbjct: 442 LGVSMLLNQVLSLSGSDFEKTVKKKVKKML 471

[Close]

BLAST of CsaV3_6G042570.1 vs. TrEMBL
Match: tr|A0A2I4E1C4|A0A2I4E1C4_9ROSI (transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108985371 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-83
Identity = 351/451 (77.83%), Postives = 393/451 (87.14%), Query Frame = 0


Query: 50  ITTQRVQVSFQRKLFSCRSRS-DSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGL 109
           +TT R ++ F  +LF C+++S DS IDGS + + +   LL AEKEEAKAVLTLFL+K+GL
Sbjct: 21  LTTPRTRLCFPERLFFCQAKSDDSGIDGSFSFEALPTTLLAAEKEEAKAVLTLFLRKKGL 80

Query: 110 SNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTH 169
           SNA+AART+NKSD FIDHL+LRLH IHKSRYLVGRELTTLEIRD L PYLE+L EEH  H
Sbjct: 81  SNAVAARTVNKSDIFIDHLILRLHSIHKSRYLVGRELTTLEIRDVLIPYLETLAEEHENH 140

Query: 170 LVHAVENFPSPSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGL 229
           +V  VENFP+P +KEKTA P+   N T+D+K+LKA+SRVSE+GP G LRP ILYLIE G+
Sbjct: 141 MVDVVENFPNPPVKEKTAVPISQPNPTLDSKRLKALSRVSEIGPAGKLRPHILYLIELGM 200

Query: 230 NLDQIKEITRRFPSFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 289
           +L+QIK ITRRFP+FAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 201 DLEQIKAITRRFPAFAYYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 260

Query: 290 XXXXXXXXXXXXXXXXXXXXXXXXXXXLTYSKQXXXXXXXXXXXXXXXXXXXXXXXXXXX 349
           XXXXXXXXXXXXXXXXXXXXXXXXXXX TYS+Q       XXXXXXXXXXXXXXXXXXXX
Sbjct: 261 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTYSRQKMKSTVEXXXXXXXXXXXXXXXXXXXX 320

Query: 350 XXXXXXXXEKLRPTAEYFHTLGVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSMEX 409
           XXXXX   +KLRPTAEYFH+LGVDV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXYS+EX
Sbjct: 321 XXXXXSVEDKLRPTAEYFHSLGVDVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSIEX 380

Query: 410 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKFPQYFGYSLEGRIKPRYAIMK 469
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL+KFPQYFGYSLE RIKPR+A +K
Sbjct: 381 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVKFPQYFGYSLEERIKPRFARVK 440

Query: 470 NSQVMLLLNQLLTLSESNFNKAVIKKVNKLL 500
              V +LLNQ+L+LS SNF KA+ KK+ K+L
Sbjct: 441 ECGVSVLLNQVLSLSYSNFEKALNKKMKKML 471

The following BLAST results are available for this feature:

BLAST of CsaV3_6G042570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48453.1	1.1e-154	100.00	hypothetical protein Csa_6G487740 [Cucumis sativus]	[more]
XP_004142030.2	2.9e-142	100.00	PREDICTED: uncharacterized protein LOC101203240 [Cucumis sativus]	[more]
XP_008440165.1	5.1e-131	94.03	PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo]	[more]
XP_023544699.1	4.3e-114	82.72	transcription termination factor MTERF5, chloroplastic isoform X4 [Cucurbita pep...	[more]
XP_022950735.1	7.4e-114	82.72	transcription termination factor MTERF5, chloroplastic isoform X2 [Cucurbita mos...	[more]

BLAST of CsaV3_6G042570.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14605.1	6.8e-61	66.12	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	4.0e-05	43.18	Mitochondrial transcription termination factor family protein	[more]
AT2G21710.1	2.6e-04	41.51	Mitochondrial transcription termination factor family protein	[more]
AT2G44020.1	5.8e-04	42.22	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	9.9e-04	39.53	Mitochondrial transcription termination factor family protein	[more]

BLAST of CsaV3_6G042570.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JVI3\|MTEF5_ARATH	1.2e-59	66.12	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|Q84X53\|MTEF1_ARATH	7.3e-04	43.18	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_6G042570.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KG07\|A0A0A0KG07_CUCSA	7.4e-155	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487740 PE=4 SV=1	[more]
tr\|A0A1S3B026\|A0A1S3B026_CUCME	3.4e-131	94.03	transcription termination factor MTERF5, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A251Q7X9\|A0A251Q7X9_PRUPE	5.3e-84	80.62	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G302700 PE=4 SV=1	[more]
tr\|A0A2I4GZB4\|A0A2I4GZB4_9ROSI	9.0e-84	65.56	transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Juglan...	[more]
tr\|A0A2I4E1C4\|A0A2I4E1C4_9ROSI	1.2e-83	77.83	transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Juglan...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR038538	MTERF_sf
IPR003690	MTERF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G042570	CsaV3_6G042570	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G042570.1	CsaV3_6G042570.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G042570.1.cds4	CsaV3_6G042570.1.cds4	CDS
CsaV3_6G042570.1.cds3	CsaV3_6G042570.1.cds3	CDS
CsaV3_6G042570.1.cds2	CsaV3_6G042570.1.cds2	CDS
CsaV3_6G042570.1.cds1	CsaV3_6G042570.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G042570.1.exon4	CsaV3_6G042570.1.exon4	exon
CsaV3_6G042570.1.exon3	CsaV3_6G042570.1.exon3	exon
CsaV3_6G042570.1.exon2	CsaV3_6G042570.1.exon2	exon
CsaV3_6G042570.1.exon1	CsaV3_6G042570.1.exon1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 306..336 e-value: 7.0E-5 score: 32.2 coord: 270..301 e-value: 0.0025 score: 27.1 coord: 374..405 e-value: 0.0028 score: 26.9 coord: 234..265 e-value: 0.0012 score: 28.1 coord: 341..372 e-value: 2.1E-5 score: 33.9 coord: 410..441 e-value: 0.048 score: 22.8 coord: 442..474 e-value: 1.6 score: 17.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 221..401 e-value: 2.1E-33 score: 115.6 coord: 392..487 e-value: 4.5E-16 score: 58.6
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	G3DSA:1.25.70.10		coord: 188..282 e-value: 3.9E-12 score: 47.9 coord: 283..497 e-value: 1.4E-46 score: 160.9
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 47..498
None	No IPR available	PANTHER	PTHR13068:SF9	TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC	coord: 47..498