CsaV3_6G033610.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATGTATCTTCCTCTCACTTTCAAGTCTCACGTGCTTCACCTTCCGTCTTTAGCAGCTCAGCTCCGCCGCTGCCACTTTCCAGTTCGTTGTCGCCGCCGTTCTTCCGCTCGTGCCAGCGCCGCATCCCTCCTAACGGATCTTCACTGATTTTCCACTCGGTTGTTGCTACTGGTATTATCCCAATCTCCATCTATATCTATCTCTTCACTTCAAAAACATAAATTAGGGCTTTTCTAATGAAAAAATGGAATATATTTTTTTTTTGTTTTTGTTTTTCTTAATAACCATACCCGAATAGCAACGAAAATAGAAGAAACCCACCTTTTGATTTGCTGCATATGTCTGTCAATTGAGGCGTCCATATATCTCTTTGGTCTCTGCTGAAAATTTCCTTGCTTCTGCACCAATGAATTTTCCAGCTTCTCCCTCGTCAGTTGAAGTAATCCAATTCTCTTTTAATTCCAATGAGTGTTTTATTTTAATTGACTTCCTCAACCGTATTTATTTTTGTATATTTGTTGAAGCAGTACGCTGACCAGCGGTACTTTAAATTTACTGAAAATAAGAGCCTTCTCTATTCTTTGTTCTTCATGTTCTTGATTTAAAATATGTATATTTGGGGTAAAATATACATATTTTTGGAAGTGGAGGGCTCAAGGGACCTAAAGATTCTGCTTTTATATATGGTATGGATTTTTTTTAGGATTCTCTTAATGTTTTTGGAGAGAAAACAATATCAATGATTCTATGAAATTTACAAATTGAGTAATGGTATGTTGAAAATTATAATTGTTGTAAGCAGAGACGTGTGAAGTGTGTACAACAATATGAACCTAGAAAAGGTTTCTTGTGAATCAAAGCTTCAGGAGATCTACCATTAAATTTTTGTTGTTGTTCCTTTAATTGCATATAATCCGATAGAAAGAAAGAAAAAGTTGTTGATGTTGAGCCGGAGTGCCTGTTTTGCCTACTTGAATGAATGGTCCTTGAACAGGCTGAGCTGCCAGTATTTTATGTTGAATGAGAATGGGAGTGTCAAAATCCAACAATTAAAGGCTGTTTGAAAGTGAACCCAAATCCTGTTTGAAAATTGGCAGTGTATGAAAAGATGGTCTTGAGTCTCATGATCAGAGCTGCATAAACAGCAGCAATTTGGGGAGAGACTGATCCAGGGGTGCTTTATTTGAATTGTGTTCCTTGTGTGGTTTCATTTTAGAATTTTAGGCTGATTTCCCATAAAAAGAATTTTAAGTGTCTTTTGAAAGAACCCCTTTCTGAATCAGTTTGTATTGTCTGGATGATTGCTTTCTGACATAGTTGATAGGCCACTGACTTTTTTCCCAATTCCCAGTTGACGTACTTACAGGGTGTAATGATTTCTATTAACTATTATTTAGCTTACCGACTGTTTTCATGACGAGAAATGATTTGTTTCCCAGTGGGCACAGTAGGTGTCTAATTGAGAGAGAGAGTGCTGAGTGTGTAATTTTCTGCTATTGATAAGGGAGATTGAGTTACTTGTTTCTGAATATGAGAAGTTTTGAGTTTATGGCCTTAACGCTTGACTTCTTGCTTTTAAAATCAAGATTTTGATAGAACACTGATACAATGTTTCTATTTTATTGATACCTTCAACAGAATTACAATATAAAAGAAGTAAAATAATAAGTGAAAAAAGAACCCTAATCGTCTGCCCTTCCTCTCTTTCAAGGAATAGAGAAATTTTGCAGCCTTATTTCTTCACCAAATTCTTCATACCCTTCTTCCCTCCCCAACTTCCTATTTATAACCAACCAACTACCAACAAATCTAATTACACTTTTACCCCTGTCCTATACTAATCTAGGTATCTAACAGATTTCCTCTATCCAAAACTTCTACCTCCATCCCTTATTTCGCCTGAAGTCTGTTCAATCAGCTGAACTTCAGATTACAAAAATTAGCCAAGGGCCACAAAGAATTTGTAGAATGGTGACAAATCCATTTAAATTCCGGTTTGGTGCAGCCACCACCCACACCAATCTTTTATACTGTTCTTTGGATCTGAAAGAGTAATCTGAACCTCTTTCTGTCATCTCTTGCCACTCTATATTCTGAATCTAGGTAGCTTCTCTGGCTTTTGTGTATTTCTTCACTTTGAAATGTTCATAGTAAATAATTATTGTGAGGAAATGAACGTGGCCAGACCTTAATTATTGAAAGCCAAGAATTGTTTGACTAAATACAACTAGCTCTTCATTTAAAGGAGTTCAATCATTAAGAGGTAAAAAGGAAGACATAGTTTCAATAACTAACTAAGAGGTCATGTATTCAATTCATAGTAGCCGCCTAGGAATTAATTTCCTACAAGTTTTCTTTCACCAAAATGTTGTTGGGTCAGACGAGTTGTCTCGTGAGATTAGTCGAGTTGTGCGTAAGCTAGTCCAGACACTCACAGATGTAATGGATGGAGTTCGACTCTTTGCTTTTGGGTGCTGTTATTTTACTCATAGCTATGTTTCTGTCTTTCTTATTGCATTTGCATCTGTAAAAAGTTTTCTTGTAGTGTGTGATATTCAATCATAATTTATTTGTGTTATTTCTCTGATCATTTCTTTTAATGGTTCTACTTATGTTATGGAATTACTTTTTTTTAATAAAAAAGACACATATTCTTACTCGAAAAGTTATTGATGTTTGTTGTTTTTTCTTTGACTATTAACAGTTGGAACTTCTCTGCTTGGAGTTCTCCATAAAATGGCGTTGGTTGTGATCTGTGGCCAGCCATGCAGTGGGAAGTCCACTGCTGCACTCTGCTTAGCTGAAGCTCTCAAGGAATCAAATGTAAAAGAAGCCATTAAGATTATCGATGAAACTTCTCTTCATTTGGATCGGAATCAGAGCTATGCCAACATGCCTGCTGAAAAAAATCTAAGAGGAGTTCTCAGATCTGAAGTTGATAGATCTGTATCTAAAGATAGCATTGTCATTGTAGACTCTTTGAACAGTATAAAGGGTTATCGATATGAACTGTGGTGTTTGGCTCGTGGAACAGGAATCAGGTATTGTGTGCTGTACTGCGACGTGGAAGAAACCAATTGTAGGAAGTGGAATGAAGAGCGTCGTGAGAAAGAAGAAGCGAGCTATGATGATAAGATATTCGAAGATCTTCTCAGAAGGTTTGAGAGGCCAAATAGTAGAAATAGATGGGACTCACCATTGTTTGAGTTATTCCCACATAAAGATGGAATCGAGAAATCATCTCAGGTTATTCTAGATGCTGTATCATACCTGACTAAAACAGTGGACTCAAAGTCTCGTGATGTAAAAATTTTACAGCCAACAATTGCTACTCAGAGCTCTCGATTTTCGGAGGCTAACTCTCTATATGAGTTGGACAAAGCGACGCAAGAGGTGGTTAATGCTATTGTAGAAGCCCAATCTCTGGGAGGGCCTCTGAATAGTATCTCTCTGGGTCAGGAATTACCAACCATTGACATTTCAAGGTCGGTTGGACTACCGGAGCTTCGAAGACTACGGAGAACTTTCATCAAACTAACAGGGCAAACTAGTTTAAGCGGACGACCACCACCCTCTGATGCCGAGAGTGCCAAGAGGATGTTTGTTGACTACCTGAATAGGGAACTGGGGACTTCTTGA ATGTATGTATCTTCCTCTCACTTTCAAGTCTCACGTGCTTCACCTTCCGTCTTTAGCAGCTCAGCTCCGCCGCTGCCACTTTCCAGTTCGTTGTCGCCGCCGTTCTTCCGCTCGTGCCAGCGCCGCATCCCTCCTAACGGATCTTCACTGATTTTCCACTCGGTTGTTGCTACTGTTGGAACTTCTCTGCTTGGAGTTCTCCATAAAATGGCGTTGGTTGTGATCTGTGGCCAGCCATGCAGTGGGAAGTCCACTGCTGCACTCTGCTTAGCTGAAGCTCTCAAGGAATCAAATGTAAAAGAAGCCATTAAGATTATCGATGAAACTTCTCTTCATTTGGATCGGAATCAGAGCTATGCCAACATGCCTGCTGAAAAAAATCTAAGAGGAGTTCTCAGATCTGAAGTTGATAGATCTGTATCTAAAGATAGCATTGTCATTGTAGACTCTTTGAACAGTATAAAGGGTTATCGATATGAACTGTGGTGTTTGGCTCGTGGAACAGGAATCAGGTATTGTGTGCTGTACTGCGACGTGGAAGAAACCAATTGTAGGAAGTGGAATGAAGAGCGTCGTGAGAAAGAAGAAGCGAGCTATGATGATAAGATATTCGAAGATCTTCTCAGAAGGTTTGAGAGGCCAAATAGTAGAAATAGATGGGACTCACCATTGTTTGAGTTATTCCCACATAAAGATGGAATCGAGAAATCATCTCAGGTTATTCTAGATGCTGTATCATACCTGACTAAAACAGTGGACTCAAAGTCTCGTGATGTAAAAATTTTACAGCCAACAATTGCTACTCAGAGCTCTCGATTTTCGGAGGCTAACTCTCTATATGAGTTGGACAAAGCGACGCAAGAGGTGGTTAATGCTATTGTAGAAGCCCAATCTCTGGGAGGGCCTCTGAATAGTATCTCTCTGGGTCAGGAATTACCAACCATTGACATTTCAAGGTCGGTTGGACTACCGGAGCTTCGAAGACTACGGAGAACTTTCATCAAACTAACAGGGCAAACTAGTTTAAGCGGACGACCACCACCCTCTGATGCCGAGAGTGCCAAGAGGATGTTTGTTGACTACCTGAATAGGGAACTGGGGACTTCTTGA ATGTATGTATCTTCCTCTCACTTTCAAGTCTCACGTGCTTCACCTTCCGTCTTTAGCAGCTCAGCTCCGCCGCTGCCACTTTCCAGTTCGTTGTCGCCGCCGTTCTTCCGCTCGTGCCAGCGCCGCATCCCTCCTAACGGATCTTCACTGATTTTCCACTCGGTTGTTGCTACTGTTGGAACTTCTCTGCTTGGAGTTCTCCATAAAATGGCGTTGGTTGTGATCTGTGGCCAGCCATGCAGTGGGAAGTCCACTGCTGCACTCTGCTTAGCTGAAGCTCTCAAGGAATCAAATGTAAAAGAAGCCATTAAGATTATCGATGAAACTTCTCTTCATTTGGATCGGAATCAGAGCTATGCCAACATGCCTGCTGAAAAAAATCTAAGAGGAGTTCTCAGATCTGAAGTTGATAGATCTGTATCTAAAGATAGCATTGTCATTGTAGACTCTTTGAACAGTATAAAGGGTTATCGATATGAACTGTGGTGTTTGGCTCGTGGAACAGGAATCAGGTATTGTGTGCTGTACTGCGACGTGGAAGAAACCAATTGTAGGAAGTGGAATGAAGAGCGTCGTGAGAAAGAAGAAGCGAGCTATGATGATAAGATATTCGAAGATCTTCTCAGAAGGTTTGAGAGGCCAAATAGTAGAAATAGATGGGACTCACCATTGTTTGAGTTATTCCCACATAAAGATGGAATCGAGAAATCATCTCAGGTTATTCTAGATGCTGTATCATACCTGACTAAAACAGTGGACTCAAAGTCTCGTGATGTAAAAATTTTACAGCCAACAATTGCTACTCAGAGCTCTCGATTTTCGGAGGCTAACTCTCTATATGAGTTGGACAAAGCGACGCAAGAGGTGGTTAATGCTATTGTAGAAGCCCAATCTCTGGGAGGGCCTCTGAATAGTATCTCTCTGGGTCAGGAATTACCAACCATTGACATTTCAAGGTCGGTTGGACTACCGGAGCTTCGAAGACTACGGAGAACTTTCATCAAACTAACAGGGCAAACTAGTTTAAGCGGACGACCACCACCCTCTGATGCCGAGAGTGCCAAGAGGATGTTTGTTGACTACCTGAATAGGGAACTGGGGACTTCTTGA MYVSSSHFQVSRASPSVFSSSAPPLPLSSSLSPPFFRSCQRRIPPNGSSLIFHSVVATVGTSLLGVLHKMALVVICGQPCSGKSTAALCLAEALKESNVKEAIKIIDETSLHLDRNQSYANMPAEKNLRGVLRSEVDRSVSKDSIVIVDSLNSIKGYRYELWCLARGTGIRYCVLYCDVEETNCRKWNEERREKEEASYDDKIFEDLLRRFERPNSRNRWDSPLFELFPHKDGIEKSSQVILDAVSYLTKTVDSKSRDVKILQPTIATQSSRFSEANSLYELDKATQEVVNAIVEAQSLGGPLNSISLGQELPTIDISRSVGLPELRRLRRTFIKLTGQTSLSGRPPPSDAESAKRMFVDYLNRELGTS
BLAST of CsaV3_6G033610.1 vs. NCBI nr
Match: XP_011658446.1 (PREDICTED: uncharacterized protein LOC101223191 [Cucumis sativus]) HSP 1 Score: 716.5 bits (1848), Expect = 4.8e-203 Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. NCBI nr
Match: XP_016899904.1 (PREDICTED: protein KTI12 homolog [Cucumis melo]) HSP 1 Score: 575.1 bits (1481), Expect = 1.7e-160 Identity = 292/300 (97.33%), Postives = 299/300 (99.67%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. NCBI nr
Match: XP_022132140.1 (protein KTI12 homolog isoform X1 [Momordica charantia] >XP_022132141.1 protein KTI12 homolog isoform X1 [Momordica charantia]) HSP 1 Score: 540.4 bits (1391), Expect = 4.7e-150 Identity = 274/302 (90.73%), Postives = 288/302 (95.36%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. NCBI nr
Match: XP_022951804.1 (protein KTI12 homolog [Cucurbita moschata] >XP_022951805.1 protein KTI12 homolog [Cucurbita moschata] >XP_022951806.1 protein KTI12 homolog [Cucurbita moschata]) HSP 1 Score: 525.8 bits (1353), Expect = 1.2e-145 Identity = 265/302 (87.75%), Postives = 285/302 (94.37%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. NCBI nr
Match: XP_022962122.1 (protein KTI12 homolog [Cucurbita moschata]) HSP 1 Score: 523.9 bits (1348), Expect = 4.6e-145 Identity = 265/303 (87.46%), Postives = 288/303 (95.05%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. TAIR10
Match: AT1G13870.1 (calmodulin binding;purine nucleotide binding) HSP 1 Score: 451.8 bits (1161), Expect = 4.0e-127 Identity = 219/298 (73.49%), Postives = 261/298 (87.58%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. Swiss-Prot
Match: sp|Q9LMH0|KTI12_ARATH (Protein KTI12 homolog OS=Arabidopsis thaliana OX=3702 GN=KTI12 PE=1 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 7.2e-126 Identity = 219/298 (73.49%), Postives = 261/298 (87.58%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. Swiss-Prot
Match: sp|B8BK80|KTI12_ORYSI (Protein KTI12 homolog OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35919 PE=3 SV=2) HSP 1 Score: 438.0 bits (1125), Expect = 1.1e-121 Identity = 219/301 (72.76%), Postives = 257/301 (85.38%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. Swiss-Prot
Match: sp|B9GAG9|KTI12_ORYSJ (Protein KTI12 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=KTI12 PE=3 SV=1) HSP 1 Score: 438.0 bits (1125), Expect = 1.1e-121 Identity = 219/301 (72.76%), Postives = 257/301 (85.38%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. Swiss-Prot
Match: sp|Q0P457|KTI12_DANRE (Protein KTI12 homolog OS=Danio rerio OX=7955 GN=kti12 PE=2 SV=2) HSP 1 Score: 189.9 bits (481), Expect = 5.1e-47 Identity = 114/297 (38.38%), Postives = 170/297 (57.24%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. Swiss-Prot
Match: sp|Q4KLF3|KTI12_XENLA (Protein KTI12 homolog OS=Xenopus laevis OX=8355 GN=kti12 PE=2 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 2.5e-46 Identity = 116/297 (39.06%), Postives = 171/297 (57.58%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. TrEMBL
Match: tr|A0A1S4DV92|A0A1S4DV92_CUCME (protein KTI12 homolog OS=Cucumis melo OX=3656 GN=LOC107990703 PE=4 SV=1) HSP 1 Score: 575.1 bits (1481), Expect = 1.1e-160 Identity = 292/300 (97.33%), Postives = 299/300 (99.67%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. TrEMBL
Match: tr|A0A2N9J4Q6|A0A2N9J4Q6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59700 PE=4 SV=1) HSP 1 Score: 516.9 bits (1330), Expect = 3.7e-143 Identity = 258/302 (85.43%), Postives = 285/302 (94.37%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. TrEMBL
Match: tr|A0A1R3HNR1|A0A1R3HNR1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27903 PE=4 SV=1) HSP 1 Score: 513.5 bits (1321), Expect = 4.1e-142 Identity = 257/302 (85.10%), Postives = 278/302 (92.05%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. TrEMBL
Match: tr|A0A1R3JEZ9|A0A1R3JEZ9_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_06500 PE=4 SV=1) HSP 1 Score: 511.5 bits (1316), Expect = 1.5e-141 Identity = 255/302 (84.44%), Postives = 277/302 (91.72%), Query Frame = 0
BLAST of CsaV3_6G033610.1 vs. TrEMBL
Match: tr|A0A2I4FJT4|A0A2I4FJT4_9ROSI (protein KTI12 homolog OS=Juglans regia OX=51240 GN=LOC108999465 PE=4 SV=1) HSP 1 Score: 509.2 bits (1310), Expect = 7.7e-141 Identity = 257/302 (85.10%), Postives = 282/302 (93.38%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
|