CsaV3_6G010010.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G010010.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 8122555 .. 8122767 (-)
Sequence length177
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGTGACGAGACACTGGTGAAAATCCTAGGTAACTCATGTGATGCTAATTGTATGTGAATCTCAGGTCCAGGTGAGAGGAGACTCCCAAGTCCCGATAATGAGTTTGGAATGTGTGATGACTTAAATGATGGAACCTATTGTGCTTGTTGTGATGGTGGTTTGATTATGGTTCGATGCGATGAAAATCTTATGTTGGTTGTGAAATGA

mRNA sequence

ATGGAATGTGACGAGACACTGGTGAAAATCCTAGGTCCAGGTGAGAGGAGACTCCCAAGTCCCGATAATGAGTTTGGAATGTGTGATGACTTAAATGATGGAACCTATTGTGCTTGTTGTGATGGTGGTTTGATTATGGTTCGATGCGATGAAAATCTTATGTTGGTTGTGAAATGA

Coding sequence (CDS)

ATGGAATGTGACGAGACACTGGTGAAAATCCTAGGTCCAGGTGAGAGGAGACTCCCAAGTCCCGATAATGAGTTTGGAATGTGTGATGACTTAAATGATGGAACCTATTGTGCTTGTTGTGATGGTGGTTTGATTATGGTTCGATGCGATGAAAATCTTATGTTGGTTGTGAAATGA

Protein sequence

MECDETLVKILGPGERRLPSPDNEFGMCDDLNDGTYCACCDGGLIMVRCDENLMLVVK
Homology
[Close]
BLAST of CsaV3_6G010010.1 vs. NCBI nr
Match: KGN46642.1 (hypothetical protein Csa_6G117730 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MECDETLVKILGPGERRLPSPDNEFGMCDDLNDGTYCACCDGGLIMVRCDENLMLVVK 59
          MECDETLVKILGPGERRLPSPDNEFGMCDDLNDGTYCACCDGGLIMVRCDENLMLVVK
Sbjct: 1  MECDETLVKILGPGERRLPSPDNEFGMCDDLNDGTYCACCDGGLIMVRCDENLMLVVK 58

[Close]
BLAST of CsaV3_6G010010.1 vs. TrEMBL
Match: tr|A0A0A0KE10|A0A0A0KE10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117730 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.9e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MECDETLVKILGPGERRLPSPDNEFGMCDDLNDGTYCACCDGGLIMVRCDENLMLVVK 59
          MECDETLVKILGPGERRLPSPDNEFGMCDDLNDGTYCACCDGGLIMVRCDENLMLVVK
Sbjct: 1  MECDETLVKILGPGERRLPSPDNEFGMCDDLNDGTYCACCDGGLIMVRCDENLMLVVK 58

The following BLAST results are available for this feature:
BLAST of CsaV3_6G010010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46642.11.0e-27100.00hypothetical protein Csa_6G117730 [Cucumis sativus][more]
BLAST of CsaV3_6G010010.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G010010.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G010010.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KE10|A0A0A0KE10_CUCSA6.9e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117730 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G010010CsaV3_6G010010gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G010010.1.cds2CsaV3_6G010010.1.cds2CDS
CsaV3_6G010010.1.cds1CsaV3_6G010010.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G010010.1.exon2CsaV3_6G010010.1.exon2exon
CsaV3_6G010010.1.exon1CsaV3_6G010010.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G010010.1CsaV3_6G010010.1-proteinpolypeptide