CsaV3_6G009780.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G009780.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Heavy metal-associated isoprenylated plant protein
Location	chr6 : 7923875 .. 7924730 (+)
Sequence length	354

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTCTCATTAACTCACACCTAAATACTTTCCTCTCTCTCTTCCTCTCTGTCTCTAAGTTTGTACGGACACTCCATTCTTTCTCATCAGTTTCAACAAAAATGAAGGTAGCTGCGTTGTTAAATACTATTTTAATCTATGAGTTTCTTTGTTTTCTTATCGGGAGTTTTTAAAATCTAAGTCAGAATTATCATAAGAAGAAGAAATGTTTTGCTCTTAAGATTTTGATCACACGTGATTTTTGAAATGGCACCAGCAAGAAACAAAAAAATAAAATAGACTACTTTTAACTTAGATCGTGTCTTTGCAGCAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGTAATTAAAAACTATTGCATATATATATATATATTTATAACATAACTATAATCTATATTGATATAACTAATTAGTTTACAATGGAAATTACAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGATTTATGCTTCCCACCACCAAAACTATTGATAATATATTTATAATTATAACAAAATTTTAGAATATATCAAGAATAGATACTCGTTGAAGTGTCTGTACGTGTAGC

mRNA sequence

ATGAAGCAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGA

Coding sequence (CDS)

ATGAAGCAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGA

Protein sequence

MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW

Homology

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BLAST of CsaV3_6G009780.1 vs. NCBI nr
Match: XP_004140067.1 (PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus] >KGN46623.1 hypothetical protein Csa_6G113600 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.9e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL
Sbjct: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60

Query: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 118
           RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW
Sbjct: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of CsaV3_6G009780.1 vs. NCBI nr
Match: XP_008448137.1 (PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 99/120 (82.50%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVI+VSMKRGPKYRSKALKIAASVKGSIETISLVGD KDKVEVVGD+DP+ELTELL
Sbjct: 1   MKQKIVIRVSMKRGPKYRSKALKIAASVKGSIETISLVGDDKDKVEVVGDIDPMELTELL 60

Query: 61  RKGFGSAQLESVSAVED----KEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSI 117
           RKGFGSAQLE+V+AVED             GITWTCSWGVPHHSSYCYCYNL PYPS+SI
Sbjct: 61  RKGFGSAQLETVNAVEDXXXXXXXXXXXXXGITWTCSWGVPHHSSYCYCYNLGPYPSYSI 120

[Close]

BLAST of CsaV3_6G009780.1 vs. NCBI nr
Match: XP_022944683.1 (uncharacterized protein LOC111449069 [Cucurbita moschata])

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 89/124 (71.77%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVI+VSMKRG KYRS+ALKIAASV G IETISLVGD KDK+EVVGDLDPIELTE+L
Sbjct: 1   MKQKIVIRVSMKRGAKYRSQALKIAASVLGDIETISLVGDDKDKIEVVGDLDPIELTEML 60

Query: 61  RKGFGSAQLESVSAVEDKEKKKDKDDG-------ITWTCSWGVPHHSSYCYCYNLRPYPS 118
           RK FG AQLESVS VE K+               ITWTCSWGVPH + YCYCY+  PYPS
Sbjct: 61  RKRFGCAQLESVSVVEAKKXXXXXXXXXXXXXPQITWTCSWGVPHQTPYCYCYHC-PYPS 120

[Close]

BLAST of CsaV3_6G009780.1 vs. NCBI nr
Match: XP_022987042.1 (uncharacterized protein LOC111484603 [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 81/126 (64.29%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVI+VSMKRG KYRS+ALKIAASV G IETISLVGD KDK+EVVGDLDPIEL ++L
Sbjct: 1   MKQKIVIRVSMKRGSKYRSQALKIAASVSGDIETISLVGDDKDKIEVVGDLDPIELIKML 60

Query: 61  RKGFGSAQLESV---------SAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPY 118
           RK FG AQLESV                        ITW CS GVPH + YCYCY+  PY
Sbjct: 61  RKKFGCAQLESVXXXXXXXXXXXXXXXXXXXXXXXXITWMCSSGVPHQTPYCYCYH-GPY 120

[Close]

BLAST of CsaV3_6G009780.1 vs. NCBI nr
Match: XP_022140688.1 (uncharacterized protein LOC111011290 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 9.1e-31
Identity = 80/126 (63.49%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKG------SIETISLVGDHKDKVEVVGDLDPI 60
           MKQKIVI+VSMK+G KYRSK LKIAASV G      ++E ISL G+ KDK+EV+G++D I
Sbjct: 1   MKQKIVIRVSMKKGQKYRSKVLKIAASVSGNHQFIRNVEKISLEGEDKDKLEVIGEVDAI 60

Query: 61  ELTELLRKGFGSAQLESVSAVEDKEKKKDKDD-GITWTCSWGVPHHSSYCYCYNLRPYPS 118
           ELT+LLRKGFGSAQLESVSAV+ K+K KDK++ GI WT +WG+P + SYC CY L P  S
Sbjct: 61  ELTDLLRKGFGSAQLESVSAVDGKDKDKDKEEPGICWTNAWGLP-YQSYCNCY-LHPSSS 120

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BLAST of CsaV3_6G009780.1 vs. TrEMBL
Match: tr|A0A0A0KAU7|A0A0A0KAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G113600 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL
Sbjct: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60

Query: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 118
           RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW
Sbjct: 61  RKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of CsaV3_6G009780.1 vs. TrEMBL
Match: tr|A0A1S3BIE5|A0A1S3BIE5_CUCME (uncharacterized protein LOC103490424 OS=Cucumis melo OX=3656 GN=LOC103490424 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.0e-46
Identity = 99/120 (82.50%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQKIVI+VSMKRGPKYRSKALKIAASVKGSIETISLVGD KDKVEVVGD+DP+ELTELL
Sbjct: 1   MKQKIVIRVSMKRGPKYRSKALKIAASVKGSIETISLVGDDKDKVEVVGDIDPMELTELL 60

Query: 61  RKGFGSAQLESVSAVED----KEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSI 117
           RKGFGSAQLE+V+AVED             GITWTCSWGVPHHSSYCYCYNL PYPS+SI
Sbjct: 61  RKGFGSAQLETVNAVEDXXXXXXXXXXXXXGITWTCSWGVPHHSSYCYCYNLGPYPSYSI 120

[Close]

BLAST of CsaV3_6G009780.1 vs. TrEMBL
Match: tr|A0A2C9UR82|A0A2C9UR82_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G059500 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 56/107 (52.34%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQK+VI+V +  G K RSKA+KIA SV G +E+ +L G  K ++EVVGD+DP++LT  L
Sbjct: 1   MKQKVVIRVPL-NGEKSRSKAMKIAVSVSG-VESAALGGQDKSQIEVVGDVDPVKLTTQL 60

Query: 61  RKGFGSAQLESVSAV-EDKEKKKD--KDDGITWTCSWGVPHHSSYCY 105
           RK  G A+L SVSAV E KE+KK+  K   + W     VPHH  Y Y
Sbjct: 61  RKCVGQAELLSVSAVGEKKEEKKEEVKVQQMVWPYVGSVPHH-QYMY 104

[Close]

BLAST of CsaV3_6G009780.1 vs. TrEMBL
Match: tr|A0A059A2R2|A0A059A2R2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01377 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 1   MKQKIVIQVSMK-----------RGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVG 60
           MKQK+VI VSMK           R P   SKALK+A   +G +++++LVGD +D++EV G
Sbjct: 1   MKQKVVINVSMKDHATRFFCFSPRNP--HSKALKLAGGFQG-VQSVALVGD-QDRIEVTG 60

Query: 61  DLDPIELTELLRKGFGSAQLESVSAVEDKEKKKDKD---DGITWTCSWGVPHHSSYCYCY 115
           D+D + LT LLRK  G A++ +VS +++K+KK+ KD     I W    GVPH       Y
Sbjct: 61  DVDAVNLTTLLRKKVGFAKIVTVSKLDEKDKKESKDKEAPPIVWPYIGGVPHRE---IAY 120

[Close]

BLAST of CsaV3_6G009780.1 vs. TrEMBL
Match: tr|A0A2C9UUB6|A0A2C9UUB6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G067600 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.2e-12
Identity = 53/128 (41.41%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60
           MKQK+VI+VSM   PK R+KALKIA SV G +E+I+L G  K ++EVVG++D +ELT LL
Sbjct: 1   MKQKVVIKVSM-NSPKSRTKALKIAVSVSG-VESIALGGKDKSQIEVVGEVDSVELTNLL 60

Query: 61  RKGFGSAQLESVSAVED-----------KEKKKDKDDGITWTCSWGVPHHSSY------- 106
           RK  G A+L SVSA  +                     + W C  G P+   Y       
Sbjct: 61  RKNVGHAELVSVSAAGEXXXXXXXXXXXXXXXXXXXXXLAWPCVGGAPYQCIYELKQPVG 120

The following BLAST results are available for this feature:

BLAST of CsaV3_6G009780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140067.1	1.9e-60	100.00	PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus] >KGN46623.1 hy...	[more]
XP_008448137.1	1.5e-46	82.50	PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo]	[more]
XP_022944683.1	1.2e-38	71.77	uncharacterized protein LOC111449069 [Cucurbita moschata]	[more]
XP_022987042.1	2.8e-32	64.29	uncharacterized protein LOC111484603 [Cucurbita maxima]	[more]
XP_022140688.1	9.1e-31	63.49	uncharacterized protein LOC111011290 [Momordica charantia]	[more]

BLAST of CsaV3_6G009780.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G009780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G009780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAU7\|A0A0A0KAU7_CUCSA	1.2e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G113600 PE=4 SV=1	[more]
tr\|A0A1S3BIE5\|A0A1S3BIE5_CUCME	1.0e-46	82.50	uncharacterized protein LOC103490424 OS=Cucumis melo OX=3656 GN=LOC103490424 PE=...	[more]
tr\|A0A2C9UR82\|A0A2C9UR82_MANES	5.1e-14	52.34	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G059500 PE=4 SV=...	[more]
tr\|A0A059A2R2\|A0A059A2R2_EUCGR	5.7e-13	42.97	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01377 PE=4 SV...	[more]
tr\|A0A2C9UUB6\|A0A2C9UUB6_MANES	8.2e-12	41.41	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G067600 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G009780	CsaV3_6G009780	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G009780.1	CsaV3_6G009780.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G009780.1.exon1	CsaV3_6G009780.1.exon1	exon
CsaV3_6G009780.1.exon2	CsaV3_6G009780.1.exon2	exon
CsaV3_6G009780.1.exon3	CsaV3_6G009780.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G009780.1.cds1	CsaV3_6G009780.1.cds1	CDS
CsaV3_6G009780.1.cds2	CsaV3_6G009780.1.cds2	CDS
CsaV3_6G009780.1.cds3	CsaV3_6G009780.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 1..73 e-value: 1.3E-20 score: 75.4
None	No IPR available	PANTHER	PTHR22814:SF262	SUBFAMILY NOT NAMED	coord: 3..115
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 3..115