CsaV3_6G008840.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGAATTTGTACAGAAAACAGTAGAACACAATTCATCATCGTCGTCCCAAACATTGTTACTAACAATTATCATTTTCATTTTCTTTTGTTTTTAAAAAAAAGTAAAATTTGTTCTTTGGAATATAAAAAGGCTTTAGGTTCATTGAGGGTTTTGAACATATAGAAAACAGTTTGGAGACCCATTACCATTACACACACAATTATACAAAATGATGGGATTTGCACCTCCTAAAATAACTGGTATTCCGTTGCCGGAGACGCCCAAGAAAGAAGGAAGCTACAAACTTGACTCGTCGTCCTTCGACGACAAATCCATAATCCCTAAATATTTTGCTTTGCAAAACTATAGTCCAAGACATCCCCAGCCAAGAACTGCACCATTTCTACAGAATAGACATGAAAGTGGATACCTTGAATTCAATGGCGAACACAGCCTCCTCAGTCCATTTTCAAAATTCGAATCCGAGATCTCCGAATCCGACCCGAAACTCATCCACATAAGATGTACGGACAACAACAAATATTGGGTTCGCAAATCATCCGACTCCAACCACATTGTACCCACTGCCACCAAGAAAGAAGACAACCGATCCAAGTCGTCGTGCACTTTGTTCCAGCCAATCTACGATGCCAAACATAAGGCTTACTGCTTTCGGCACGTGCAGCTCGGTTACGAATTGTTTCGTGATAAGACCAACCGGTTATTGGCTAGGGAGACTGGTAAACCAGATTCTGAAAGGGAGGATGCATATGGTGTATTCACCAAAGTTATTGATTGGAATTCGTTATGTGTGTTCCCAAAACGTGTGACCTTAAAAGGCTTCAATGGCAGGTACTTGAGATATGAGGGTAAGTATTTGCAAGTAACTGGAGTGAATAATCATCCATCTCTTATCCACGAGATCTACCCTCAGAAGGATGGAAATCTTAAAATCAAGAATCTTGACTCCGGAAGGTTCTGGATCTATGATCCTGATTGGATAGTCGCTACGGCTGGAGGTATGAATCTCATACTTAACTCGAAAGGCAAAAACACAATCTTTTTTTTATTTTAGTTTTAAATTTTTTTGACATTAAATTAAAACACTCGTTTCGTGTCTAAATTTATTGTTTAATTTAGTGGCACTTGAAAAAGTTACAAAATAAGTTTTAATAATTTAGTCCCTGACATACTATTATTTGTAAAAATGACAAAAACAAAGTCCAATTCACACATTAATAGGTAAAATGTCACTAATGTCATCGTTAATAATATACGTTTGATACACATTATACATGTCTGATACACCTAATATACCCCTTGATACACCTAATACTTCTTGATACACTCGATACCTTTGATTAATACACTTGATGCACTTTATATTCTTTGATACACTCGATACCTTTTGATACACACCTAAAACATTATTAATTTATGTTTGATACACCTGATCCACTGCAGATACATTTAATATTCTTCACCTATACAATTGATTGATTAAATGCACTTGATATGCTTGAAGTCCTACTTATACATTTGATATACTATTGATATACACTTGTAAAGTTGATTCATATATTTGATAATGATTCACTTTACTGATATGCTTTAACAATAAATTGTTAATATACTTGATAATCATATATTGAGTTATATCATTCATATACTTAATAATACTCTAATGAACTGTATAAAATTTGAAAAAACAAAAATCACGTAGTAAGTATATTAATCAACTAATACATATAATATAAGTATATCACAACATTTATATACGAAACTGAGACAAAGTAAAACCAAAAAATTAATGTAAAACAATAAAACAAAATCATTTGAATCAGATTCAACTCAAAATACAGATCGAAGAAAGTAAAAAAAATTACAAATGAAGTTAAATTACTCCGATCAACAACCATTATATTACATTTCGTATTGCAATTATTGTACTATAGATATTTTAAAATTAAGATTAAGACAGAAATAATAAATAATTTCTAGTATAAGAATAAACAAATAGTTAAGGCATTAAAAAGTGATAGAATAAATAAATAATGAGTAGGATATTGAAAAGAGGAAGCGAAATAAGTTATTGGAAGATAGTTTATGAATAATAACAAATTTAAGATGGAGAAGTGAAAATCTTGTCATATTTACAAAATTCTAAAACAATGTGTTATAATTGGTATATCAGTTAAATTAAAAATTGATAGAAAATTGACGTGATTGAATTTTGAAGGAAATAATAATAATAATAATAACTAAATAGTTAAGTTTTTCTTACACTTTTTTTAGTTTTGGGGTTGATTTCTATTTGATTCATTTTTTTAAACAAAAAATTATATTTGTAGCCCTTATATTTTACTAATTTTTCCAAAATTTATATGTTTTATAGGTTGTATAATTGTGTCATCGAGTTTTAAAAGTAACATTTAATGTAATATAAGCTATATTGTATGGCTTGATTGAACAGATGGAAATAGAGACGATCCGAAATTATTGTTTCGACCTGTGAGCCTTCACGACAACGTCGTGTTTTTTCACAGCTTAGGAAACACTGCCATCTGCGCCATTATATCCGTGGATAACAAGGAAAATTGTTTGAATGCTACTGAATCAGATCCTACTGAAGAAACCCAATTTAAAGTTTCAGAAGATTATGTACTACAAAGAAGAAAAATAGACAAGATGCAGTATAAGCTTGAAAATGGAAGGATTTATGGGGAGAGAGTTTGGTCAGTGGCCAAAGGATATGCCATTAACAAAACCGAAAAACCTGATAAAATCAAATTCACTTTCTCTTTTGAAGACAAAAGGAACAAGAAATGGACCAGCATATTTGCCAAACAATTTGAAGCCACCAAGATTTTTAATGCTGAGTTTCCTTCGATAAAAGACGGGGAAGTTATTAAAGGAAATACTATTGGTGGACCATACACATGGAGAGAAACTGATGATAAAGATAAAATTTTGATGTCTTGTAATAGCACCATCACTGTACCTCCCAAGTCGAAAGTGAAGGTTAATGTCGTCGTCAAACGGGGGTTTTGCGAAGTCCCTTTTTCGTATACTCAAATCGAGACTAGTCTAGAGGGACGAAACAATACACAGTCATACAACGATGGAGTTTTCACCGGAGTTAATTCGTACCAATTCCAGATAACGACTGATAAGGTAGCATTGCCTGTCTGAATAAAAGGTAAATTATTGGCATTGTTTTGTGTGTTTTATTCTGGTATGTGTGGTAATAAAGAATAATGTGGTTCAACCACGTATATGACCACACACCTTTTCTATCCTTCATTTACTTTTGAAGTTTGTCAATTGTGTGTTCTTATGTTTGGAGTGTGTTTGTGATTGTTGTGTTACATTTGAAGTTTAATTAATTATATGATCAATTCATACTTTTCTATTTGCTCACTCTGTACACTATTTAAATTAGTTTCAATTTAGACGTTGAGATTTGATCAAACGTTATATAAATTTCTGTTAGGATGCAAGTGGTTTGAAATAAGAATTGCATAACTATAGGAATTCTTCTTGTTTTTTCTTTTTAAAGAATATGGGGATCATTAGAGGTGCACCAAACATCTCTATCAAGTGGAAAATTTTGTAATACCTTCAGTTCACACGAGATTTTGAAGAGAAATGTAATTTGTAGAATTGAACTTTGTATATTGATGAATATAACGGATACAATCTCTAATATTTA ATGATGGGATTTGCACCTCCTAAAATAACTGGTATTCCGTTGCCGGAGACGCCCAAGAAAGAAGGAAGCTACAAACTTGACTCGTCGTCCTTCGACGACAAATCCATAATCCCTAAATATTTTGCTTTGCAAAACTATAGTCCAAGACATCCCCAGCCAAGAACTGCACCATTTCTACAGAATAGACATGAAAGTGGATACCTTGAATTCAATGGCGAACACAGCCTCCTCAGTCCATTTTCAAAATTCGAATCCGAGATCTCCGAATCCGACCCGAAACTCATCCACATAAGATGTACGGACAACAACAAATATTGGGTTCGCAAATCATCCGACTCCAACCACATTGTACCCACTGCCACCAAGAAAGAAGACAACCGATCCAAGTCGTCGTGCACTTTGTTCCAGCCAATCTACGATGCCAAACATAAGGCTTACTGCTTTCGGCACGTGCAGCTCGGTTACGAATTGTTTCGTGATAAGACCAACCGGTTATTGGCTAGGGAGACTGGTAAACCAGATTCTGAAAGGGAGGATGCATATGGTGTATTCACCAAAGTTATTGATTGGAATTCGTTATGTGTGTTCCCAAAACGTGTGACCTTAAAAGGCTTCAATGGCAGGTACTTGAGATATGAGGGTAAGTATTTGCAAGTAACTGGAGTGAATAATCATCCATCTCTTATCCACGAGATCTACCCTCAGAAGGATGGAAATCTTAAAATCAAGAATCTTGACTCCGGAAGGTTCTGGATCTATGATCCTGATTGGATAGTCGCTACGGCTGGAGATGGAAATAGAGACGATCCGAAATTATTGTTTCGACCTGTGAGCCTTCACGACAACGTCGTGTTTTTTCACAGCTTAGGAAACACTGCCATCTGCGCCATTATATCCGTGGATAACAAGGAAAATTGTTTGAATGCTACTGAATCAGATCCTACTGAAGAAACCCAATTTAAAGTTTCAGAAGATTATGTACTACAAAGAAGAAAAATAGACAAGATGCAGTATAAGCTTGAAAATGGAAGGATTTATGGGGAGAGAGTTTGGTCAGTGGCCAAAGGATATGCCATTAACAAAACCGAAAAACCTGATAAAATCAAATTCACTTTCTCTTTTGAAGACAAAAGGAACAAGAAATGGACCAGCATATTTGCCAAACAATTTGAAGCCACCAAGATTTTTAATGCTGAGTTTCCTTCGATAAAAGACGGGGAAGTTATTAAAGGAAATACTATTGGTGGACCATACACATGGAGAGAAACTGATGATAAAGATAAAATTTTGATGTCTTGTAATAGCACCATCACTGTACCTCCCAAGTCGAAAGTGAAGGTTAATGTCGTCGTCAAACGGGGGTTTTGCGAAGTCCCTTTTTCGTATACTCAAATCGAGACTAGTCTAGAGGGACGAAACAATACACAGTCATACAACGATGGAGTTTTCACCGGAGTTAATTCGTACCAATTCCAGATAACGACTGATAAGGTAGCATTGCCTGTCTGA ATGATGGGATTTGCACCTCCTAAAATAACTGGTATTCCGTTGCCGGAGACGCCCAAGAAAGAAGGAAGCTACAAACTTGACTCGTCGTCCTTCGACGACAAATCCATAATCCCTAAATATTTTGCTTTGCAAAACTATAGTCCAAGACATCCCCAGCCAAGAACTGCACCATTTCTACAGAATAGACATGAAAGTGGATACCTTGAATTCAATGGCGAACACAGCCTCCTCAGTCCATTTTCAAAATTCGAATCCGAGATCTCCGAATCCGACCCGAAACTCATCCACATAAGATGTACGGACAACAACAAATATTGGGTTCGCAAATCATCCGACTCCAACCACATTGTACCCACTGCCACCAAGAAAGAAGACAACCGATCCAAGTCGTCGTGCACTTTGTTCCAGCCAATCTACGATGCCAAACATAAGGCTTACTGCTTTCGGCACGTGCAGCTCGGTTACGAATTGTTTCGTGATAAGACCAACCGGTTATTGGCTAGGGAGACTGGTAAACCAGATTCTGAAAGGGAGGATGCATATGGTGTATTCACCAAAGTTATTGATTGGAATTCGTTATGTGTGTTCCCAAAACGTGTGACCTTAAAAGGCTTCAATGGCAGGTACTTGAGATATGAGGGTAAGTATTTGCAAGTAACTGGAGTGAATAATCATCCATCTCTTATCCACGAGATCTACCCTCAGAAGGATGGAAATCTTAAAATCAAGAATCTTGACTCCGGAAGGTTCTGGATCTATGATCCTGATTGGATAGTCGCTACGGCTGGAGATGGAAATAGAGACGATCCGAAATTATTGTTTCGACCTGTGAGCCTTCACGACAACGTCGTGTTTTTTCACAGCTTAGGAAACACTGCCATCTGCGCCATTATATCCGTGGATAACAAGGAAAATTGTTTGAATGCTACTGAATCAGATCCTACTGAAGAAACCCAATTTAAAGTTTCAGAAGATTATGTACTACAAAGAAGAAAAATAGACAAGATGCAGTATAAGCTTGAAAATGGAAGGATTTATGGGGAGAGAGTTTGGTCAGTGGCCAAAGGATATGCCATTAACAAAACCGAAAAACCTGATAAAATCAAATTCACTTTCTCTTTTGAAGACAAAAGGAACAAGAAATGGACCAGCATATTTGCCAAACAATTTGAAGCCACCAAGATTTTTAATGCTGAGTTTCCTTCGATAAAAGACGGGGAAGTTATTAAAGGAAATACTATTGGTGGACCATACACATGGAGAGAAACTGATGATAAAGATAAAATTTTGATGTCTTGTAATAGCACCATCACTGTACCTCCCAAGTCGAAAGTGAAGGTTAATGTCGTCGTCAAACGGGGGTTTTGCGAAGTCCCTTTTTCGTATACTCAAATCGAGACTAGTCTAGAGGGACGAAACAATACACAGTCATACAACGATGGAGTTTTCACCGGAGTTAATTCGTACCAATTCCAGATAACGACTGATAAGGTAGCATTGCCTGTCTGA MMGFAPPKITGIPLPETPKKEGSYKLDSSSFDDKSIIPKYFALQNYSPRHPQPRTAPFLQNRHESGYLEFNGEHSLLSPFSKFESEISESDPKLIHIRCTDNNKYWVRKSSDSNHIVPTATKKEDNRSKSSCTLFQPIYDAKHKAYCFRHVQLGYELFRDKTNRLLARETGKPDSEREDAYGVFTKVIDWNSLCVFPKRVTLKGFNGRYLRYEGKYLQVTGVNNHPSLIHEIYPQKDGNLKIKNLDSGRFWIYDPDWIVATAGDGNRDDPKLLFRPVSLHDNVVFFHSLGNTAICAIISVDNKENCLNATESDPTEETQFKVSEDYVLQRRKIDKMQYKLENGRIYGERVWSVAKGYAINKTEKPDKIKFTFSFEDKRNKKWTSIFAKQFEATKIFNAEFPSIKDGEVIKGNTIGGPYTWRETDDKDKILMSCNSTITVPPKSKVKVNVVVKRGFCEVPFSYTQIETSLEGRNNTQSYNDGVFTGVNSYQFQITTDKVALPV
BLAST of CsaV3_6G008840.1 vs. NCBI nr
Match: XP_004140504.1 (PREDICTED: uncharacterized protein LOC101208463 [Cucumis sativus] >KGN46531.1 hypothetical protein Csa_6G107320 [Cucumis sativus]) HSP 1 Score: 1040.8 bits (2690), Expect = 1.5e-300 Identity = 502/502 (100.00%), Postives = 502/502 (100.00%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. NCBI nr
Match: XP_004140503.2 (PREDICTED: uncharacterized protein LOC101208220 [Cucumis sativus] >KGN46533.1 hypothetical protein Csa_6G107830 [Cucumis sativus]) HSP 1 Score: 772.3 bits (1993), Expect = 1.0e-219 Identity = 386/508 (75.98%), Postives = 426/508 (83.86%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. NCBI nr
Match: XP_022155409.1 (uncharacterized protein LOC111022557 [Momordica charantia]) HSP 1 Score: 513.1 bits (1320), Expect = 1.1e-141 Identity = 256/486 (52.67%), Postives = 334/486 (68.72%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. NCBI nr
Match: XP_016902478.1 (PREDICTED: uncharacterized protein LOC103499072 [Cucumis melo]) HSP 1 Score: 360.5 bits (924), Expect = 9.1e-96 Identity = 175/239 (73.22%), Postives = 195/239 (81.59%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. NCBI nr
Match: XP_022157630.1 (uncharacterized protein LOC111024291 [Momordica charantia]) HSP 1 Score: 347.8 bits (891), Expect = 6.1e-92 Identity = 203/497 (40.85%), Postives = 281/497 (56.54%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. TrEMBL
Match: tr|A0A0A0KFN1|A0A0A0KFN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107320 PE=4 SV=1) HSP 1 Score: 1040.8 bits (2690), Expect = 1.0e-300 Identity = 502/502 (100.00%), Postives = 502/502 (100.00%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. TrEMBL
Match: tr|A0A0A0KAP4|A0A0A0KAP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107830 PE=4 SV=1) HSP 1 Score: 772.3 bits (1993), Expect = 6.6e-220 Identity = 386/508 (75.98%), Postives = 426/508 (83.86%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. TrEMBL
Match: tr|A0A1S4E2M9|A0A1S4E2M9_CUCME (uncharacterized protein LOC103499072 OS=Cucumis melo OX=3656 GN=LOC103499072 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 6.0e-96 Identity = 175/239 (73.22%), Postives = 195/239 (81.59%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. TrEMBL
Match: tr|A0A0A0KD65|A0A0A0KD65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G085100 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 4.0e-76 Identity = 166/481 (34.51%), Postives = 265/481 (55.09%), Query Frame = 0
BLAST of CsaV3_6G008840.1 vs. TrEMBL
Match: tr|A0A1S3CBI1|A0A1S3CBI1_CUCME (uncharacterized protein LOC103499080 OS=Cucumis melo OX=3656 GN=LOC103499080 PE=4 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 6.9e-76 Identity = 169/481 (35.14%), Postives = 257/481 (53.43%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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