CsaV3_6G008350.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G008350.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotein CURVATURE THYLAKOID 1B, chloroplastic
Locationchr6 : 6702064 .. 6704433 (+)
Sequence length528
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGAATAAGGAGAAAACTATAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAGAAGATATTTATCCATAAGCTAAGCATTGAGTGTGTTATTACAAAACCCTTTTATCCAATCAAACACTATCCATTTCAATCCTCTCTCATTTCCTCAACTCTCATAGCATTATCCAAATTGATTGTGAAATGAGTGGCTCTCTATCTTCATAACTTTAACACAATTTATATAACCCAACACACCAAAAACCATCTCCAAAAAAGGGAAATAAACCAAAACACATAAACACCTGTCTACAAAACAAAAGGAAAAAAACCCCAACACCAAAATCTTCACTTTCTTTCTTGCAGAAATTACCTTCTTCTTGTGCGTGAATATTTTGAGTGTGTGAGGCATTCATCAATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCCTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTGAGAATTATTCTACTATATATATTAATATATCATTTAAATTTAGCAGATCTTAAGTTAACTATATTGATTTTGTACGGATTATAGGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTGTATGCCAGATTTGTTTTTTTGAAAGACGAAAAAGAAAAGTTAATTACATTATTATTAATGGGTTGGATTTTGTTTTGGTTCAGTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGTAAGCATTTTGATTCTGTATGAGTTGTAAATAAGTATAGTTGATCAAGAGCATAAAATAAGGGTCTTATATTAAATTTTGCAAAATTTGTACATTAATCTATTTTTATATATATCTGCAGGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGGTAAGTTTCTACATAATTTAATCCCAATTATATACTTCTAAATTTATAGCATACAATTTAGTTTAATGGCCATATTTGCATTTTGTGTATAATTATATGTGCAGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTAATAAGTTCTAATAACACACCTTTTTTTTTTTTTTTAATTAAACACCATGATTATATTATATTGAAGATGTTTATTTATTTATTATATTGTTGTTTGATTTTAAAAAAAAATACATTTTGATAAATTTTTATAGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAAAGAAGAGTATTGATGTTGTTGTGTGTGTTCAGAGAGGGGATTTAATTATTGAATAATAAAAAAAATATAATTAATTAATTGCTGTTTTTGCATTGCATTATTGCAACTATATTTGCATGAAAAAATTGTAACTCTTCTTTTTACCCACCCTTTTTTGTTCTCTTCATATATTATCTCTTATGTAATTGCCCTAACTGATCAATATCCCAATCTTTATGTGCTTTCCTTTTACTACCTAGCTACCTCTTATATTGCTCTCCAATTATTCCAATTTTACACAAACACTTTTTCAAGCCACCTAGGGACTACACCCTTTTAGTGTGTATTGTATAAGATTGATTGTTCGGTGATGTTTTCCTTTTGAACTTTGTTTTCTCAAGGAAACAATGTAATTGTTATTTTTCTTAAACATAATTTAAATAAGTTAGTAGAGAGATCACTTAAATGATACAATTACAAACGTCTAAACCTATATAAAAAATTTTATATTTTAAATCGTAAGCAACAAAAGAAACACATTCAAAATTCAAGAAAAATGATGATCTCTCTTAATTTTTCTTCATTGACACACCAATAATACGTTAGGTATGTTTAGCTCGTTTACTTTATAGGTTGATCATAAATAACTCGACTCCATTAAAATTTATACACTATAGGCTGGTTCGAGTGAACAGTCACTCTCCTCCTACTCATAAACTATAGATTATAAATAATGTTAGTTTGGCTAAAACCTAAAGCATTGATGGGCCTTGTGGTTGGAGACTTTGGCCCAATATAATAAAACAATAATATGTTTCAAATTAATTGGGAAATAAAAAAGTGGTTTTTATTTATTTAAGAGAATAGGGTGCTCTTTTTCTTATATAATTATTTATCATATTTCATACCATCTTTTTTATTTTTTTAACAATATT

mRNA sequence

ATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCCTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCCTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAA

Protein sequence

MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS
Homology
[Close]
BLAST of CsaV3_6G008350.1 vs. NCBI nr
Match: XP_004140528.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypothetical protein Csa_6G095900 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 3.0e-86
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]
BLAST of CsaV3_6G008350.1 vs. NCBI nr
Match: XP_008459821.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 3.3e-77
Identity = 163/176 (92.61%), Postives = 165/176 (93.75%), Query Frame = 0 

Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLP  X      +QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPXXXXXXXXSAQIRPWKSTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVM MATGEVPAEVAAGELAEMPEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]
BLAST of CsaV3_6G008350.1 vs. NCBI nr
Match: XP_022992417.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 148/175 (84.57%), Postives = 157/175 (89.71%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASP         X      +QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPXXXXXXXXXXXXXXXXTQIRPWKSTAYCRRI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVA  E+AE+PEI+KKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL+ETY+EIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]
BLAST of CsaV3_6G008350.1 vs. NCBI nr
Match: XP_022929793.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 147/175 (84.00%), Postives = 156/175 (89.14%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASP         X      +QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPXXXXXXXXXXXXXXXXTQIRSWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVA  E+AE+PEI+KKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL+ETY+E+IGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]
BLAST of CsaV3_6G008350.1 vs. NCBI nr
Match: XP_023896619.1 (protein CURVATURE THYLAKOID 1B, chloroplastic-like [Quercus suber] >XP_023896633.1 protein CURVATURE THYLAKOID 1B, chloroplastic-like [Quercus suber])

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 131/176 (74.43%), Postives = 151/176 (85.80%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPS-STVPLPTLXSPPTPLSQIRPWKSTAYCRK 60
           MAS+SSST  +SSSSTL+D KAPRQSA+ S   V LPTL  PP   SQ +PWK+TAYCRK
Sbjct: 1   MASTSSSTLTISSSSTLVDVKAPRQSAASSPQCVSLPTLPPPPVQQSQNKPWKTTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           +ARNVM MATGE PAEVA   +AE+PEIVK VQEAWDKVEDKYAVSSLAV+G VALW S 
Sbjct: 61  LARNVMAMATGEAPAEVA---VAELPEIVKTVQEAWDKVEDKYAVSSLAVAGVVALWGST 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           G++SAIDRLPL+PG+LELVGIGY+GWFAYKNL+F+PDREALL+K+K TY +IIGSS
Sbjct: 121 GMISAIDRLPLIPGVLELVGIGYSGWFAYKNLVFKPDREALLEKIKVTYKDIIGSS 173

[Close]
BLAST of CsaV3_6G008350.1 vs. TAIR10
Match: AT2G46820.1 (photosystem I P subunit)

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = 0 

Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLXSPPTPL-SQIRPWKSTAYCRKI 66
           ++ ++SSSST++DS+AP       SAS  S + LPTL     P+ S  R  K+TAYCRKI
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTL-----PIQSHTRAAKATAYCRKI 61

Query: 67  ARNVMGMAT---GEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWA 126
            RNV+  AT   GE PA     E  E+PEIVK  QEAW+KV+DKYA+ SLA +G VALW 
Sbjct: 62  VRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWG 121

Query: 127 SAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           SAG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]
BLAST of CsaV3_6G008350.1 vs. TAIR10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 85.1 bits (209), Expect = 4.7e-17
Identity = 52/154 (33.77%), Postives = 91/154 (59.09%), Query Frame = 0 

Query: 27  ASPSSTVPLPTLXSP-PTPLSQIR--PWKSTAYCRKIARNVMGMATGEVPAEV-AAGELA 86
           AS S+T+P P L +   + L+ I+  P+  T     ++   +      +   V A+GE +
Sbjct: 2   ASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGESS 61

Query: 87  EMP---EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVG 146
           +     ++V  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVG
Sbjct: 62  DSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVG 121

Query: 147 IGYTGWFAYKNLIFRPDREALLQKLKETYSEIIG 174
           I ++ WF Y+ L+F+PDR+ L + +K++ ++I+G
Sbjct: 122 ILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]
BLAST of CsaV3_6G008350.1 vs. TAIR10
Match: AT4G01150.1 (unknown protein)

HSP 1 Score: 80.9 bits (198), Expect = 8.8e-16
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 86  EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGW 145
           E++  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GYTGW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 146 FAYKNLIFRPDREALLQKLKETYSEIIGS 175
           F Y+ L+F+  R+ L + ++    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

[Close]
BLAST of CsaV3_6G008350.1 vs. TAIR10
Match: AT4G38100.1 (unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-10
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = 0 

Query: 70  GEVPAEVAAGELAEMPEIVKKVQEAWDKVED-------KYAVSSLAVSGFVALWASAGVV 129
           G V A       +E P+   +  +A + + D        Y++        VAL+ ++ +V
Sbjct: 79  GVVVAAEEKNSNSEAPQAEDEETQALEFLNDIKLDSDKTYSILLYGSGAIVALYLTSAIV 138

Query: 130 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGS 175
           S+++ +PL P L+E+VG+GYT WF  + L+F+ +RE L  K+ E   +++GS
Sbjct: 139 SSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 190

[Close]
BLAST of CsaV3_6G008350.1 vs. Swiss-Prot
Match: sp|Q8LCA1|CUT1B_ARATH (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-49
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = 0 

Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLXSPPTPL-SQIRPWKSTAYCRKI 66
           ++ ++SSSST++DS+AP       SAS  S + LPTL     P+ S  R  K+TAYCRKI
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTL-----PIQSHTRAAKATAYCRKI 61

Query: 67  ARNVMGMAT---GEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWA 126
            RNV+  AT   GE PA     E  E+PEIVK  QEAW+KV+DKYA+ SLA +G VALW 
Sbjct: 62  VRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWG 121

Query: 127 SAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           SAG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]
BLAST of CsaV3_6G008350.1 vs. Swiss-Prot
Match: sp|Q9M812|CUT1C_ARATH (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.4e-16
Identity = 52/154 (33.77%), Postives = 91/154 (59.09%), Query Frame = 0 

Query: 27  ASPSSTVPLPTLXSP-PTPLSQIR--PWKSTAYCRKIARNVMGMATGEVPAEV-AAGELA 86
           AS S+T+P P L +   + L+ I+  P+  T     ++   +      +   V A+GE +
Sbjct: 2   ASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGESS 61

Query: 87  EMP---EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVG 146
           +     ++V  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVG
Sbjct: 62  DSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVG 121

Query: 147 IGYTGWFAYKNLIFRPDREALLQKLKETYSEIIG 174
           I ++ WF Y+ L+F+PDR+ L + +K++ ++I+G
Sbjct: 122 ILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]
BLAST of CsaV3_6G008350.1 vs. Swiss-Prot
Match: sp|O04616|CUT1A_ARATH (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 86  EIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGW 145
           E++  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GYTGW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 146 FAYKNLIFRPDREALLQKLKETYSEIIGS 175
           F Y+ L+F+  R+ L + ++    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

[Close]
BLAST of CsaV3_6G008350.1 vs. Swiss-Prot
Match: sp|Q8LDD3|CUT1D_ARATH (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = 0 

Query: 70  GEVPAEVAAGELAEMPEIVKKVQEAWDKVED-------KYAVSSLAVSGFVALWASAGVV 129
           G V A       +E P+   +  +A + + D        Y++        VAL+ ++ +V
Sbjct: 79  GVVVAAEEKNSNSEAPQAEDEETQALEFLNDIKLDSDKTYSILLYGSGAIVALYLTSAIV 138

Query: 130 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGS 175
           S+++ +PL P L+E+VG+GYT WF  + L+F+ +RE L  K+ E   +++GS
Sbjct: 139 SSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 190

[Close]
BLAST of CsaV3_6G008350.1 vs. Swiss-Prot
Match: sp|Q119Z5|SYE_TRIEI (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-05
Identity = 21/55 (38.18%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 119 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIG 174
           A V+ A+D +P++  + EL+G+ Y  WF Y+ L+ R +R+ LL K++    EI G
Sbjct: 824 AVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIKREIFG 878

[Close]
BLAST of CsaV3_6G008350.1 vs. TrEMBL
Match: tr|A0A0A0KCB7|A0A0A0KCB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.0e-86
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]
BLAST of CsaV3_6G008350.1 vs. TrEMBL
Match: tr|A0A1S3CCA4|A0A1S3CCA4_CUCME (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.2e-77
Identity = 163/176 (92.61%), Postives = 165/176 (93.75%), Query Frame = 0 

Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLP  X      +QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPXXXXXXXXSAQIRPWKSTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVM MATGEVPAEVAAGELAEMPEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]
BLAST of CsaV3_6G008350.1 vs. TrEMBL
Match: tr|A0A2I4ETT4|A0A2I4ETT4_9ROSI (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Juglans regia OX=51240 GN=LOC108992650 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.4e-60
Identity = 131/176 (74.43%), Postives = 148/176 (84.09%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQS-ASPSSTVPLPTLXSPPTPLSQIRPWKSTAYCRK 60
           MAS+SSST A+SSSSTLLD +APR S A+ S  V LPTL  PP   SQ RPWK+TAYCRK
Sbjct: 1   MASTSSSTLAISSSSTLLDGRAPRCSPAASSQCVTLPTL-PPPQVQSQNRPWKTTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVM MATGE PAEV A EL   PEIV+  QEAWDKVEDKYAVSSLAV+G V LW S 
Sbjct: 61  IARNVMAMATGEAPAEVVAYEL---PEIVRTAQEAWDKVEDKYAVSSLAVAGAVGLWVST 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           G+VSAIDRLPL+PG+LELVGIGYTGWFAYKNL+F+PDRE+L+QK+++TY EIIGSS
Sbjct: 121 GMVSAIDRLPLIPGVLELVGIGYTGWFAYKNLVFKPDRESLIQKMRDTYKEIIGSS 172

[Close]
BLAST of CsaV3_6G008350.1 vs. TrEMBL
Match: tr|V4U701|V4U701_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022571mg PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 9.2e-60
Identity = 127/173 (73.41%), Postives = 149/173 (86.13%), Query Frame = 0 

Query: 5   SSSTFALSSSSTLLDSKAPRQSASPSST--VPLPTLXSPPTPLSQIRPWKSTAYCRKIAR 64
           +SS  ++SSSSTL+D+KAPRQSA P+ST  V LPTL  PP P SQ RPWK+T YCRK+AR
Sbjct: 2   ASSALSISSSSTLVDAKAPRQSA-PASTQCVSLPTLPPPPVP-SQTRPWKATTYCRKMAR 61

Query: 65  NVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 124
           NVM MATGE PAEVAA    E+PEIVK VQEAWDKVEDKYAV+SLAV+  +A+W S G++
Sbjct: 62  NVMAMATGEAPAEVAA---TELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMI 121

Query: 125 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           SAIDRLPLVPG+LELVGIGYTGWFAYKNL+F+PDREAL+QK+K+TY +IIGSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIGSS 169

[Close]
BLAST of CsaV3_6G008350.1 vs. TrEMBL
Match: tr|A0A067H445|A0A067H445_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030898mg PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 9.2e-60
Identity = 127/173 (73.41%), Postives = 149/173 (86.13%), Query Frame = 0 

Query: 5   SSSTFALSSSSTLLDSKAPRQSASPSST--VPLPTLXSPPTPLSQIRPWKSTAYCRKIAR 64
           +SS  ++SSSSTL+D+KAPRQSA P+ST  V LPTL  PP P SQ RPWK+T YCRK+AR
Sbjct: 2   ASSALSISSSSTLVDAKAPRQSA-PASTQCVSLPTLPPPPVP-SQTRPWKATTYCRKMAR 61

Query: 65  NVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 124
           NVM MATGE PAEVAA    E+PEIVK VQEAWDKVEDKYAV+SLAV+  +A+W S G++
Sbjct: 62  NVMAMATGEAPAEVAA---TELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMI 121

Query: 125 SAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176
           SAIDRLPLVPG+LELVGIGYTGWFAYKNL+F+PDREAL+QK+K+TY +IIGSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIGSS 169

The following BLAST results are available for this feature:
BLAST of CsaV3_6G008350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140528.13.0e-86100.00PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN4... [more]
XP_008459821.13.3e-7792.61PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo][more]
XP_022992417.11.0e-7084.57protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima][more]
XP_022929793.12.3e-7084.00protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749... [more]
XP_023896619.13.0e-6274.43protein CURVATURE THYLAKOID 1B, chloroplastic-like [Quercus suber] >XP_023896633... [more]
BLAST of CsaV3_6G008350.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46820.11.4e-5060.11photosystem I P subunit[more]
AT1G52220.14.7e-1733.77FUNCTIONS IN: molecular_function unknown[more]
AT4G01150.18.8e-1640.45unknown protein[more]
AT4G38100.11.9e-1030.36unknown protein[more]
BLAST of CsaV3_6G008350.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LCA1|CUT1B_ARATH2.6e-4960.11Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q9M812|CUT1C_ARATH8.4e-1633.77Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|O04616|CUT1A_ARATH1.6e-1440.45Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q8LDD3|CUT1D_ARATH3.4e-0930.36Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q119Z5|SYE_TRIEI3.0e-0538.18Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=... [more]
BLAST of CsaV3_6G008350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCB7|A0A0A0KCB7_CUCSA2.0e-86100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1[more]
tr|A0A1S3CCA4|A0A1S3CCA4_CUCME2.2e-7792.61protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A2I4ETT4|A0A2I4ETT4_9ROSI5.4e-6074.43protein CURVATURE THYLAKOID 1B, chloroplastic OS=Juglans regia OX=51240 GN=LOC10... [more]
tr|V4U701|V4U701_9ROSI9.2e-6073.41Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022571mg PE=4 ... [more]
tr|A0A067H445|A0A067H445_CITSI9.2e-6073.41Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030898mg PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
Vocabulary: INTERPRO
TermDefinition
IPR033344CURT1
IPR025564CAAD_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009579 thylakoid
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G008350CsaV3_6G008350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G008350.1CsaV3_6G008350.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G008350.1.exon1CsaV3_6G008350.1.exon1exon
CsaV3_6G008350.1.exon2CsaV3_6G008350.1.exon2exon
CsaV3_6G008350.1.exon3CsaV3_6G008350.1.exon3exon
CsaV3_6G008350.1.exon4CsaV3_6G008350.1.exon4exon
CsaV3_6G008350.1.exon5CsaV3_6G008350.1.exon5exon
CsaV3_6G008350.1.exon6CsaV3_6G008350.1.exon6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G008350.1.cds1CsaV3_6G008350.1.cds1CDS
CsaV3_6G008350.1.cds2CsaV3_6G008350.1.cds2CDS
CsaV3_6G008350.1.cds3CsaV3_6G008350.1.cds3CDS
CsaV3_6G008350.1.cds4CsaV3_6G008350.1.cds4CDS
CsaV3_6G008350.1.cds5CsaV3_6G008350.1.cds5CDS
CsaV3_6G008350.1.cds6CsaV3_6G008350.1.cds6CDS


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 90..173
e-value: 2.6E-30
score: 104.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR33222:SF9PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTICcoord: 6..175
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 6..175