CsaV3_6G005380.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G005380.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionextensin-1-like
Locationchr6 : 4582457 .. 4583860 (-)
Sequence length1215
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCATGTCTATATGATTTTCATGGTTTTTAATTAAAAAAAAATTAGGTGGAGTAATTAAATTAGATTTCACCGGTGATCATTATGTTAAGACTTGAGAGGGGGGTTTGAGTGAGTGAAGTGGGTAAAAGGACAAAGCTATATAAAGGGGAGGAAAGGCAGTGTTAAAAACCCACCAATCCATTCAAGGATGGGAAAAATGGGATCTTCAATGGCTCCTATTCTTTTTGCTGCCTTTGTTGCTCTCCTTTCCCTAACTCTGCCGTCCACTACCAATGCTAATTATATCTACGCTTCTCCTCCTCCACCTAAGAAGGTATATTACCCGCCTCCAGTATACCATTCTCCTCCACCACCCAAGAAATCATACTATCCACCTCCAGTGTATCACTCTCCACCACCACCCAAGAAGGTTTACTATCCACCACCAGTTTACTCTCCACCACCACCAAAGAAGGTGTATTACCCACCTCCTGTCTACAAGTCTCCTCCGCCACCCAAGAAGGTTTATTACCCACCTCCCGTCTACAAGTCTCCTCCGCCACCTAAGAAGGTGTATTACCCACCTCCCGTCTACAAGTCTCCCCCGCCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTACCCTCCTCCCGTCTATAAGTCTCCTCCACCACCAAAGAAGGTATACTACCCACCTCCAGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTATCCACCACCCGTCTATAAGTCTCCTCCACCACCAAAGAAAGTATACTACCCACCACCAGTCTACTCACCACCACCGCCAAAGAAGGTATACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTATACTACCCACCCCCCGTCTACTCACCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCTCCTCCCGTCTACTCTCCACCACCACCAAAGAAAGTATACTATCCACCTCCCGTCTACTCTCCACCACCACCAGTATACCACTCCCACCACCTCCGGTCTATCATTCTCCACCACCACCAGTATACCATTCCCCACCACCTCCCGTTTATTACTACTCATCGCCACCGCCACCTCCACACTACTAGGAATTAA

mRNA sequence

ATGGGAAAAATGGGATCTTCAATGGCTCCTATTCTTTTTGCTGCCTTTGTTGCTCTCCTTTCCCTAACTCTGCCGTCCACTACCAATGCTAATTATATCTACGCTTCTCCTCCTCCACCTAAGAAGGTATATTACCCGCCTCCAGTATACCATTCTCCTCCACCACCCAAGAAATCATACTATCCACCTCCAGTGTATCACTCTCCACCACCACCCAAGAAGGTTTACTATCCACCACCAGTTTACTCTCCACCACCACCAAAGAAGGTGTATTACCCACCTCCTGTCTACAAGTCTCCTCCGCCACCCAAGAAGGTTTATTACCCACCTCCCGTCTACAAGTCTCCTCCGCCACCTAAGAAGGTGTATTACCCACCTCCCGTCTACAAGTCTCCCCCGCCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTACCCTCCTCCCGTCTATAAGTCTCCTCCACCACCAAAGAAGGTATACTACCCACCTCCAGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTATCCACCACCCGTCTATAAGTCTCCTCCACCACCAAAGAAAGTATACTACCCACCACCAGTCTACTCACCACCACCGCCAAAGAAGGTATACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTATACTACCCACCCCCCGTCTACTCACCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCTCCTCCCGTCTACTCTCCACCACCACCAAAGAAAGTATACTATCCACCTCCCGTCTACTCTCCACCACCACCAGTATACCACTCCCACCACCTCCGGTCTATCATTCTCCACCACCACCAGTATACCATTCCCCACCACCTCCCGTTTATTACTACTCATCGCCACCGCCACCTCCACACTACTAGGAATTAA

Coding sequence (CDS)

ATGGGAAAAATGGGATCTTCAATGGCTCCTATTCTTTTTGCTGCCTTTGTTGCTCTCCTTTCCCTAACTCTGCCGTCCACTACCAATGCTAATTATATCTACGCTTCTCCTCCTCCACCTAAGAAGGTATATTACCCGCCTCCAGTATACCATTCTCCTCCACCACCCAAGAAATCATACTATCCACCTCCAGTGTATCACTCTCCACCACCACCCAAGAAGGTTTACTATCCACCACCAGTTTACTCTCCACCACCACCAAAGAAGGTGTATTACCCACCTCCTGTCTACAAGTCTCCTCCGCCACCCAAGAAGGTTTATTACCCACCTCCCGTCTACAAGTCTCCTCCGCCACCTAAGAAGGTGTATTACCCACCTCCCGTCTACAAGTCTCCCCCGCCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTGTACTACCCACCTCCCGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTACCCTCCTCCCGTCTATAAGTCTCCTCCACCACCAAAGAAGGTATACTACCCACCTCCAGTCTACAAGTCTCCCCCACCTCCCAAGAAGGTATACTATCCACCACCCGTCTATAAGTCTCCTCCACCACCAAAGAAAGTATACTACCCACCACCAGTCTACTCACCACCACCGCCAAAGAAGGTATACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTGTACTACCCACCTCCCGTCTACTCACCACCACCACCGAAGAAGGTATACTACCCACCCCCCGTCTACTCACCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCACCACCCGTCTACTCTCCACCACCACCGAAGAAGGTATACTACCCTCCTCCCGTCTACTCTCCACCACCACCAAAGAAAGTATACTATCCACCTCCCGTCTACTCTCCACCACCACCAGTATACCACTCCCACCACCTCCGGTCTATCATTCTCCACCACCACCAGTATACCATTCCCCACCACCTCCCGTTTATTACTACTCATCGCCACCGCCACCTCCACACTACTAGGAATTAA

Protein sequence

MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYASPPPPKKVYYPPPVYHSPPPPKKSYYPPPVYHSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYKSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPKKVYYPPPVYSPPPPVYHSHHLRSIILHHHQYTIPHHLPFITTHRHRHLHTTRN
Homology
[Close]
BLAST of CsaV3_6G005380.1 vs. NCBI nr
Match: KGN46155.1 (hypothetical protein Csa_6G058200 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-08
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS
Sbjct: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 36

[Close]
BLAST of CsaV3_6G005380.1 vs. NCBI nr
Match: XP_022961603.1 (extensin-1-like [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP+LF AFVALLSL+LPSTTNANY YAS
Sbjct: 1  MGKMGSSMAPLLFTAFVALLSLSLPSTTNANYFYAS 36

[Close]
BLAST of CsaV3_6G005380.1 vs. NCBI nr
Match: XP_008441528.1 (PREDICTED: extensin-1-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP LFAAFVALLSLTLPS+ NANYIYAS
Sbjct: 1  MGKMGSSMAPHLFAAFVALLSLTLPSSANANYIYAS 36

[Close]
BLAST of CsaV3_6G005380.1 vs. NCBI nr
Match: XP_022990411.1 (extensin-1-like [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-06
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP+LF AFVALLSL+ PSTT+ANY+YAS
Sbjct: 1  MGKMGSSMAPLLFTAFVALLSLSFPSTTHANYVYAS 36

[Close]
BLAST of CsaV3_6G005380.1 vs. NCBI nr
Match: XP_022939251.1 (extensin-1-like [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-05
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSS AP+LF AF+A+LSL LPSTT+ANY+YAS
Sbjct: 1  MGKMGSSWAPLLFGAFLAILSLNLPSTTSANYVYAS 36

[Close]
BLAST of CsaV3_6G005380.1 vs. TrEMBL
Match: tr|A0A0A0K8S7|A0A0A0K8S7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058200 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS
Sbjct: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 36

[Close]
BLAST of CsaV3_6G005380.1 vs. TrEMBL
Match: tr|A0A1S3B372|A0A1S3B372_CUCME (extensin-1-like OS=Cucumis melo OX=3656 GN=LOC103485630 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 1  MGKMGSSMAPILFAAFVALLSLTLPSTTNANYIYAS 37
          MGKMGSSMAP LFAAFVALLSLTLPS+ NANYIYAS
Sbjct: 1  MGKMGSSMAPHLFAAFVALLSLTLPSSANANYIYAS 36

The following BLAST results are available for this feature:
BLAST of CsaV3_6G005380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46155.12.6e-08100.00hypothetical protein Csa_6G058200 [Cucumis sativus][more]
XP_022961603.11.1e-0688.89extensin-1-like [Cucurbita moschata][more]
XP_008441528.11.8e-0691.67PREDICTED: extensin-1-like [Cucumis melo][more]
XP_022990411.15.4e-0683.33extensin-1-like [Cucurbita maxima][more]
XP_022939251.14.5e-0577.78extensin-1-like [Cucurbita moschata][more]
BLAST of CsaV3_6G005380.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G005380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G005380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8S7|A0A0A0K8S7_CUCSA1.7e-08100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058200 PE=4 SV=1[more]
tr|A0A1S3B372|A0A1S3B372_CUCME1.2e-0691.67extensin-1-like OS=Cucumis melo OX=3656 GN=LOC103485630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G005380CsaV3_6G005380gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G005380.1.cds1CsaV3_6G005380.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G005380.1.exon1CsaV3_6G005380.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G005380.1CsaV3_6G005380.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..220
NoneNo IPR availablePANTHERPTHR36586FAMILY NOT NAMEDcoord: 33..253