CsaV3_5G014220.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014220.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 11215438 .. 11216110 (+)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATGATTATACGTATTAATATAAATTATATAGTTTAGGCATAATTATATTACCTTCCTTATTTACTTTCTATCGTTTCTGTATTTATGCACAATTTGATCCCCACGTAAACACACATAATATTTATCAATAAAATATTCTCCACATGGTATCAGAGCTGTAGCTAGATCTACTGTACCTGTCACCGTCGTGGCGATCTCTGCCGTGAAATCCATTGATGACCAAATCCTTCATCTCATTTTCGTTTGCCGTCAATCTCTGTCTATAGATCTCTACTCAGATTCGACCATATTCGTTCGCCGTTCAACGTTCGACGAAATCTTATTCTCTGTTCGCCGTCGGTCTCTGTCCATAGATCTCTGCTCGCTCCTCGTTCAGATCTGAAGAACGAATTTCACAATCTGCTTCGCGTGTCACGATCATCGTTGATCTCTGCATCTATCGTTCGCAACTCACGAATCTTCTTCGTGATTCATAGATCACGTATCATTTACGCGTCGTTCAGTTGCAAATCTTGCTCAGCAGCGTCGACGCCCAACCACGATTGCTCGCAACCCAGATCCGACGAAGCCCAATCGAAGAAATTCGATTTCGTCCACGTTAGTCGCGATTTGTGGTTGGCGCTTCTGCTTCCGTTACTCTTAAAACGTGCGATTTCAAATATTTGA

mRNA sequence

ATGTTTGATGATTATACATTCGACCATATTCGTTCGCCGTTCAACGTTCGACGAAATCTTATTCTCTGTTCGCCGTCGGTCTCTGTCCATAGATCTCTGCTCGCTCCTCGTTCAGATCTGAAGAACGAATTTCACAATCTGCTTCGCGTGTCACGATCATCGTTGATCTCTGCATCTATCGTTCGCAACTCACGAATCTTCTTCGTGATTCATAGATCACGTATCATTTACGCGTCGTTCAGTTGCAAATCTTGCTCAGCAGCGTCGACGCCCAACCACGATTGCTCGCAACCCAGATCCGACGAAGCCCAATCGAAGAAATTCGATTTCGTCCACGTTAGTCGCGATTTGTGGTTGGCGCTTCTGCTTCCGTTACTCTTAAAACGTGCGATTTCAAATATTTGA

Coding sequence (CDS)

ATGTTTGATGATTATACATTCGACCATATTCGTTCGCCGTTCAACGTTCGACGAAATCTTATTCTCTGTTCGCCGTCGGTCTCTGTCCATAGATCTCTGCTCGCTCCTCGTTCAGATCTGAAGAACGAATTTCACAATCTGCTTCGCGTGTCACGATCATCGTTGATCTCTGCATCTATCGTTCGCAACTCACGAATCTTCTTCGTGATTCATAGATCACGTATCATTTACGCGTCGTTCAGTTGCAAATCTTGCTCAGCAGCGTCGACGCCCAACCACGATTGCTCGCAACCCAGATCCGACGAAGCCCAATCGAAGAAATTCGATTTCGTCCACGTTAGTCGCGATTTGTGGTTGGCGCTTCTGCTTCCGTTACTCTTAAAACGTGCGATTTCAAATATTTGA

Protein sequence

MFDDYTFDHIRSPFNVRRNLILCSPSVSVHRSLLAPRSDLKNEFHNLLRVSRSSLISASIVRNSRIFFVIHRSRIIYASFSCKSCSAASTPNHDCSQPRSDEAQSKKFDFVHVSRDLWLALLLPLLLKRAISNI
Homology
[Close]
BLAST of CsaV3_5G014220.1 vs. NCBI nr
Match: KGN49590.1 (hypothetical protein Csa_5G013780 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 1.8e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MFDDYTFDHIRSPFNVRRNLILCSPSVSVHRSLLAPRSDLKNEFHNLLRVSRSSLISASI 60
           MFDDYTFDHIRSPFNVRRNLILCSPSVSVHRSLLAPRSDLKNEFHNLLRVSRSSLISASI
Sbjct: 1   MFDDYTFDHIRSPFNVRRNLILCSPSVSVHRSLLAPRSDLKNEFHNLLRVSRSSLISASI 60

Query: 61  VRNSRIFFVIHRSRIIYASFSCKSCSAASTPNHDCSQPRSDEAQSKKFDFVHVSRDLWLA 120
           VRNSRIFFVIHRSRIIYASFSCKSCSAASTPNHDCSQPRSDEAQSKKFDFVHVSRDLWLA
Sbjct: 61  VRNSRIFFVIHRSRIIYASFSCKSCSAASTPNHDCSQPRSDEAQSKKFDFVHVSRDLWLA 120

Query: 121 LLLPLLLKRAISNI 135
           LLLPLLLKRAISNI
Sbjct: 121 LLLPLLLKRAISNI 134

[Close]
BLAST of CsaV3_5G014220.1 vs. TrEMBL
Match: tr|A0A0A0KIQ1|A0A0A0KIQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G013780 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.2e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MFDDYTFDHIRSPFNVRRNLILCSPSVSVHRSLLAPRSDLKNEFHNLLRVSRSSLISASI 60
           MFDDYTFDHIRSPFNVRRNLILCSPSVSVHRSLLAPRSDLKNEFHNLLRVSRSSLISASI
Sbjct: 1   MFDDYTFDHIRSPFNVRRNLILCSPSVSVHRSLLAPRSDLKNEFHNLLRVSRSSLISASI 60

Query: 61  VRNSRIFFVIHRSRIIYASFSCKSCSAASTPNHDCSQPRSDEAQSKKFDFVHVSRDLWLA 120
           VRNSRIFFVIHRSRIIYASFSCKSCSAASTPNHDCSQPRSDEAQSKKFDFVHVSRDLWLA
Sbjct: 61  VRNSRIFFVIHRSRIIYASFSCKSCSAASTPNHDCSQPRSDEAQSKKFDFVHVSRDLWLA 120

Query: 121 LLLPLLLKRAISNI 135
           LLLPLLLKRAISNI
Sbjct: 121 LLLPLLLKRAISNI 134

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49590.11.8e-67100.00hypothetical protein Csa_5G013780 [Cucumis sativus][more]
BLAST of CsaV3_5G014220.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014220.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014220.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KIQ1|A0A0A0KIQ1_CUCSA1.2e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G013780 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_5G014220CsaV3_5G014220gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G014220.1.exon1CsaV3_5G014220.1.exon1exon
CsaV3_5G014220.1.exon2CsaV3_5G014220.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G014220.1.cds1CsaV3_5G014220.1.cds1CDS
CsaV3_5G014220.1.cds2CsaV3_5G014220.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_5G014220.1CsaV3_5G014220.1-proteinpolypeptide