CsaV3_5G002950.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G002950.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RNA-binding protein NOB1
Location	chr5 : 1856096 .. 1859659 (+)
Sequence length	1854

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCCTATTTCAATAGTGAGTTAAAGACGACGACGTTTAAGCTTTGGTTTCCTAATTGTGAACTTGCTCCAAATTTTTGTAGGGTTTTAGGGTTTCAATCAGTATCACTTTGCTTCATCAACCTCTCAATTCTGTTCTTCCTCTTCTTCTTACGGCCATGGAGACCCCTTCTCCGGCTTCATGCTGGAGCAATGTTGTGAAAACTCAACCAGCACCGAAGCCTCAGCATCAGACTCCGTCCTCCTCCGTTCAAGTGTTCGCCGATAGCTGTAAGTCCAGTAAAGGCGTTGCTGTTGCCGTTGTTGATGCCAACGCCATTATCCAAGGAGGAGACAAGCTTTCCTCCTCTGCCGATAAGTTTGTTTCAGTTCCTGAGGTTTTGGATGAGATTCGTGATCCCGTGTCTCGCCATAGGCTCGCCTTTGTTCCCTTCACTCTTGAATCCATGGATCCCTCTCCTGACGCTCTTAATAAAGGTAGAATTCTGAATTATAGTCTCTCTATGTTGTTACAGACTCATCGTGTTGTTACTTCAAAGTTGAACTGATTGTTGTTTATAAGGAATGCTAGGATTTAAGGTTTAAGGTTTATTGCTGTTAGACTGTGTTTTAGGTGACTTTGAGAGGCAGGATTTTATGTTATTGAAGAGATTACTTTTTAAACGGTTTCTAAAATTTTCAGCCTGGCTAAATACCACATTTTTTTAGAATTGATTTCAGTTGGTTAAACCGTCCTTTGCCCGTTCACCAAAAAGTCATTACTCGTGGATTCCAGTGATTGGAAGCTGGTCAAGATCCTCCATTGATTAACTAGTTTAGCTATATAGCCTTAGCCCACTCCAAGGCGTTGGGGGATGATGACAAGAGTTATACGTAATTAAGTTTTCAACTTGGGGGTTACCCAGTGCATGGGAGAGTATCTCCAATTATGTTGAACTTTTACCACCAGGCACCCCTTGATTGAGAAAGCTAATGATTAAGTAGTACTAACTCTGGCCTCTTACTGCAAAGAAAATGTGAAGCATGCAAAATAAGTCTAACTTGGTGGTAGCCTTCTGAAATCGGTCTTTCCTAGTTGAATACTCTGAGAACCTATTACTGTTGATATCATAGTTGTTTCTGCCGTCTTAAAGTATTTTCTGTTGAATCTTACAGTAATCAAGTTTGCAAGGGCTACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCTCTCACTTACACATTGGAGACTCAGATTCATGGGACTAAACATCTTCGTGAGTGTCCTCCCCCTGTTCACATGGTTAATACAAAGAGGTTACCTGAGAAAGACATGCCTGGTTGGGGATCCAACGTTCCTAATCTGGAAGAATGGGAAGCGTTAGAGCAAGATGCTGATGATCCGTCCCGTTTGACATCAAAGATTCTGCCTCTGCAGGATTTAAACCTGAACATCATCCCTTCAGATGGCCAATCTGAAGATCTTTCACTAGAGCACAAGGATGATGATAACTTGGAGCATCTAGATGAAACTGAGAGTGATTCAAGAAGATCAAGGAGATATCCTCCGAAGAAGAAGGAAATTAATATTGAAGGGAAGAAGATGGTGGCCGATGGAATTGATGCATCTCAGGGACAATATGATGATAATGAGGGCGACTGGACACCTGCTGTCAGTCGAAGCACTCAGAGAAGGTATCATAGGAGGAAAGCTAGACGTGAATATTATGAGTCCTTGGCTGAAAAGGATAGTCAGCAAGATGTTGAAACCACAAATGGTGACATCCACGTGGAATTCAATGGGTCAGGTCAATCAGAGGATAAAATCTCTGAACTGCCAAATACTGGAAATGGGAATGAGAGCCAGATAGGAGAAGGAACAAACAATAATGAAAATATCTCAGAAATTTTGAAGCAGATGAGGCTTGAGGAAGATTCATTAAATGCTCTTCATATGAGCGCCTCCACAAAAGAAGGGTCTGATGAAAGTGAAGGGGAGAATGCAGTGGCTGTTGAGGGCACCAAAGATGCAGAAAAGGATGAAATGGAGCACATGGAAGATGCAAGTCAGACCAATGAAAGTGTCGACATGTCAAATGTAGATGATGTTAGCAGTGATCAGAGTTGGATGCTGAGGTCCTTGTCTGAATCAAGTGTAGCTTGTGTCACTGGCGATTATGCAATGCAGAACGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCTGGAGGAATGCAGATCCGGCAACTTCACAGGTATGTATATTTAGTGGGCGATCTGATATTATGTGTGCCTCAACACTTTGTTAATTCACTAATTATCAATTGTTTAACCAACTTCATCAGTCAAAAACTACAACTTTTATTCCCTTTTCTGATCCACCTGAGTTCTGACAACCCCCAACAACCTTTGTCCAACCGATGGTTTAGTCGTTTTCATTTCTTACAACTCTAGCTAACTTTTAGGCTTATGAGTCGGTGTTAATTCTGCCTTGTATATTGATTGAGTAGCTTGTGATTAAGTCATCATGTAATGCAATTACGTACCCAAATGTTTACAATATGTGCTCTCAGGTGGATTTTGAAATGCCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATATTTTGCCCAAAGTGTGGAAATGGTGGAACTTTGCGCAAGGTAGCTGTTACAGTTGGCGAGAATGGAGTTGTGTTAGCTGCCCGTAAGCCAAGGATTACTCTGCGAGGCACAAAAGTGAGTATTCCTCAGTGTTGTCCTTGAGAATAATATATATATATATACACATAATTTTAATATTAGATGTTTTTACTCACGAACAGTCTGATAATCAGTGGATTGTTTTAAATTTTAAGGCTACTCTAACCATCTTGAGGTATGCATTTTTTTTTCCTTTTATGTACAGTTTTCACTTCCCCTACCGCAAGGTGGAAGGGATGCCATTACCAAAAATCTTGTTTTACGTGAAGATCAACTCCCACAGAAGTTTCTTCATCCAAAAACCAAGAAGAAAGTCAATAAGCAGGTTCTTTTCAATCAAACTTGCCTTTCGTTTTTTATCATTATCCTGTCATTTTCTTCAAGATTTCACCTGAACTTCACATAACCAAGTAATCTATTTTCCATTTTTTTACCATTTTTCAGGGCGATGAATTTTTTGCTGTGGATGATTTCTTCAGCCACCACAATACTGACAAGAGAGCTCCTTTGCAGCCTCCCGTAAGGCAAGCTTTGGCTGTCTTCAGTGGAAAGAGAAATCCAAATGATAACCATTACTCTCGATCTAAGCATAGATAGAACTATTATTTATGGATTTTGATGTTCATTACTGTTTTCAGAATATCTTATGTGATTGAGTTATATTGTATTCAAAGTCTAAAGCTCAGCTTAAATGAGTGCAGTTTTGTCCTGAATTTTCTTCAAATTATTTGTTCAAGGCTGATTTATTATTTATTTCCTCAATTTCAGGGTTTGTTGGTTTCTTGACAAATTTCGGCCTATAATTCATAAATACTAAAGGGATATTTTTTAAATAGCAAAATAAACTAAAATATTTACGAAATA

mRNA sequence

ATGGAGACCCCTTCTCCGGCTTCATGCTGGAGCAATGTTGTGAAAACTCAACCAGCACCGAAGCCTCAGCATCAGACTCCGTCCTCCTCCGTTCAAGTGTTCGCCGATAGCTGTAAGTCCAGTAAAGGCGTTGCTGTTGCCGTTGTTGATGCCAACGCCATTATCCAAGGAGGAGACAAGCTTTCCTCCTCTGCCGATAAGTTTGTTTCAGTTCCTGAGGTTTTGGATGAGATTCGTGATCCCGTGTCTCGCCATAGGCTCGCCTTTGTTCCCTTCACTCTTGAATCCATGGATCCCTCTCCTGACGCTCTTAATAAAGTAATCAAGTTTGCAAGGGCTACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCTCTCACTTACACATTGGAGACTCAGATTCATGGGACTAAACATCTTCGTGAGTGTCCTCCCCCTGTTCACATGGTTAATACAAAGAGGTTACCTGAGAAAGACATGCCTGGTTGGGGATCCAACGTTCCTAATCTGGAAGAATGGGAAGCGTTAGAGCAAGATGCTGATGATCCGTCCCGTTTGACATCAAAGATTCTGCCTCTGCAGGATTTAAACCTGAACATCATCCCTTCAGATGGCCAATCTGAAGATCTTTCACTAGAGCACAAGGATGATGATAACTTGGAGCATCTAGATGAAACTGAGAGTGATTCAAGAAGATCAAGGAGATATCCTCCGAAGAAGAAGGAAATTAATATTGAAGGGAAGAAGATGGTGGCCGATGGAATTGATGCATCTCAGGGACAATATGATGATAATGAGGGCGACTGGACACCTGCTGTCAGTCGAAGCACTCAGAGAAGGTATCATAGGAGGAAAGCTAGACGTGAATATTATGAGTCCTTGGCTGAAAAGGATAGTCAGCAAGATGTTGAAACCACAAATGGTGACATCCACGTGGAATTCAATGGGTCAGGTCAATCAGAGGATAAAATCTCTGAACTGCCAAATACTGGAAATGGGAATGAGAGCCAGATAGGAGAAGGAACAAACAATAATGAAAATATCTCAGAAATTTTGAAGCAGATGAGGCTTGAGGAAGATTCATTAAATGCTCTTCATATGAGCGCCTCCACAAAAGAAGGGTCTGATGAAAGTGAAGGGGAGAATGCAGTGGCTGTTGAGGGCACCAAAGATGCAGAAAAGGATGAAATGGAGCACATGGAAGATGCAAGTCAGACCAATGAAAGTGTCGACATGTCAAATGTAGATGATGTTAGCAGTGATCAGAGTTGGATGCTGAGGTCCTTGTCTGAATCAAGTGTAGCTTGTGTCACTGGCGATTATGCAATGCAGAACGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCTGGAGGAATGCAGATCCGGCAACTTCACAGGTGGATTTTGAAATGCCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATATTTTGCCCAAAGTGTGGAAATGGTGGAACTTTGCGCAAGGTAGCTGTTACAGTTGGCGAGAATGGAGTTGTGTTAGCTGCCCGTAAGCCAAGGATTACTCTGCGAGGCACAAAATTTTCACTTCCCCTACCGCAAGGTGGAAGGGATGCCATTACCAAAAATCTTGTTTTACGTGAAGATCAACTCCCACAGAAGTTTCTTCATCCAAAAACCAAGAAGAAAGTCAATAAGCAGGGCGATGAATTTTTTGCTGTGGATGATTTCTTCAGCCACCACAATACTGACAAGAGAGCTCCTTTGCAGCCTCCCGTAAGGCAAGCTTTGGCTGTCTTCAGTGGAAAGAGAAATCCAAATGATAACCATTACTCTCGATCTAAGCATAGATAG

Coding sequence (CDS)

ATGGAGACCCCTTCTCCGGCTTCATGCTGGAGCAATGTTGTGAAAACTCAACCAGCACCGAAGCCTCAGCATCAGACTCCGTCCTCCTCCGTTCAAGTGTTCGCCGATAGCTGTAAGTCCAGTAAAGGCGTTGCTGTTGCCGTTGTTGATGCCAACGCCATTATCCAAGGAGGAGACAAGCTTTCCTCCTCTGCCGATAAGTTTGTTTCAGTTCCTGAGGTTTTGGATGAGATTCGTGATCCCGTGTCTCGCCATAGGCTCGCCTTTGTTCCCTTCACTCTTGAATCCATGGATCCCTCTCCTGACGCTCTTAATAAAGTAATCAAGTTTGCAAGGGCTACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCTCTCACTTACACATTGGAGACTCAGATTCATGGGACTAAACATCTTCGTGAGTGTCCTCCCCCTGTTCACATGGTTAATACAAAGAGGTTACCTGAGAAAGACATGCCTGGTTGGGGATCCAACGTTCCTAATCTGGAAGAATGGGAAGCGTTAGAGCAAGATGCTGATGATCCGTCCCGTTTGACATCAAAGATTCTGCCTCTGCAGGATTTAAACCTGAACATCATCCCTTCAGATGGCCAATCTGAAGATCTTTCACTAGAGCACAAGGATGATGATAACTTGGAGCATCTAGATGAAACTGAGAGTGATTCAAGAAGATCAAGGAGATATCCTCCGAAGAAGAAGGAAATTAATATTGAAGGGAAGAAGATGGTGGCCGATGGAATTGATGCATCTCAGGGACAATATGATGATAATGAGGGCGACTGGACACCTGCTGTCAGTCGAAGCACTCAGAGAAGGTATCATAGGAGGAAAGCTAGACGTGAATATTATGAGTCCTTGGCTGAAAAGGATAGTCAGCAAGATGTTGAAACCACAAATGGTGACATCCACGTGGAATTCAATGGGTCAGGTCAATCAGAGGATAAAATCTCTGAACTGCCAAATACTGGAAATGGGAATGAGAGCCAGATAGGAGAAGGAACAAACAATAATGAAAATATCTCAGAAATTTTGAAGCAGATGAGGCTTGAGGAAGATTCATTAAATGCTCTTCATATGAGCGCCTCCACAAAAGAAGGGTCTGATGAAAGTGAAGGGGAGAATGCAGTGGCTGTTGAGGGCACCAAAGATGCAGAAAAGGATGAAATGGAGCACATGGAAGATGCAAGTCAGACCAATGAAAGTGTCGACATGTCAAATGTAGATGATGTTAGCAGTGATCAGAGTTGGATGCTGAGGTCCTTGTCTGAATCAAGTGTAGCTTGTGTCACTGGCGATTATGCAATGCAGAACGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCTGGAGGAATGCAGATCCGGCAACTTCACAGGTGGATTTTGAAATGCCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATATTTTGCCCAAAGTGTGGAAATGGTGGAACTTTGCGCAAGGTAGCTGTTACAGTTGGCGAGAATGGAGTTGTGTTAGCTGCCCGTAAGCCAAGGATTACTCTGCGAGGCACAAAATTTTCACTTCCCCTACCGCAAGGTGGAAGGGATGCCATTACCAAAAATCTTGTTTTACGTGAAGATCAACTCCCACAGAAGTTTCTTCATCCAAAAACCAAGAAGAAAGTCAATAAGCAGGGCGATGAATTTTTTGCTGTGGATGATTTCTTCAGCCACCACAATACTGACAAGAGAGCTCCTTTGCAGCCTCCCGTAAGGCAAGCTTTGGCTGTCTTCAGTGGAAAGAGAAATCCAAATGATAACCATTACTCTCGATCTAAGCATAGATAG

Protein sequence

METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRYPPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAEKDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMRLEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVDDVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDNHYSRSKHR

Homology

[Close]

BLAST of CsaV3_5G002950.1 vs. NCBI nr
Match: XP_004143919.1 (PREDICTED: RNA-binding protein NOB1 [Cucumis sativus] >KGN50114.1 hypothetical protein Csa_5G154760 [Cucumis sativus])

HSP 1 Score: 1208.4 bits (3125), Expect = 0.0e+00
Identity = 617/617 (100.00%), Postives = 617/617 (100.00%), Query Frame = 0


Query: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60
           METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK
Sbjct: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60

Query: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120
           LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL
Sbjct: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120

Query: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180
           SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL
Sbjct: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180

Query: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240
           EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY
Sbjct: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240

Query: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300
           PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE
Sbjct: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300

Query: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360
           KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR
Sbjct: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360

Query: 361 LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD 420
           LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD
Sbjct: 361 LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD 420

Query: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480
           DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY
Sbjct: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480

Query: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540
           NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI
Sbjct: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540

Query: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600
           TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF
Sbjct: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600

Query: 601 SGKRNPNDNHYSRSKHR 618
           SGKRNPNDNHYSRSKHR
Sbjct: 601 SGKRNPNDNHYSRSKHR 617

[Close]

BLAST of CsaV3_5G002950.1 vs. NCBI nr
Match: XP_008437247.1 (PREDICTED: RNA-binding protein NOB1 [Cucumis melo])

HSP 1 Score: 1149.4 bits (2972), Expect = 0.0e+00
Identity = 594/617 (96.27%), Postives = 601/617 (97.41%), Query Frame = 0


Query: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60
           ME+PSPASCWSNVVKTQPAPKPQHQ+P+SSVQVFADSCKSSKGVAVAVVDANAIIQGGDK
Sbjct: 1   MESPSPASCWSNVVKTQPAPKPQHQSPTSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60

Query: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120
           LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL
Sbjct: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120

Query: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180
           SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL
Sbjct: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180

Query: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240
           EQDADDPS LTSKILPLQDLNLN IPSDGQSEDLSLEHKD DN EHLDETESDSRRSRRY
Sbjct: 181 EQDADDPSSLTSKILPLQDLNLNTIPSDGQSEDLSLEHKDADNSEHLDETESDSRRSRRY 240

Query: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300
           PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRY+RRKARREYYESLAE
Sbjct: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYNRRKARREYYESLAE 300

Query: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360
           KD QQD+ETTNGDI VE NGSGQSEDKISELPNTGNGNESQI E   NNEN+SEILKQMR
Sbjct: 301 KDIQQDIETTNGDIQVESNGSGQSEDKISELPNTGNGNESQIEEEMFNNENLSEILKQMR 360

Query: 361 LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD 420
           LEEDSLNALHMSASTKEGS ESEGEN +AVEG KDA KDEMEHMEDASQTNESVD SNVD
Sbjct: 361 LEEDSLNALHMSASTKEGS-ESEGEN-MAVEGIKDAVKDEMEHMEDASQTNESVDTSNVD 420

Query: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480
           DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY
Sbjct: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480

Query: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540
           NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI
Sbjct: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540

Query: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600
           TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF
Sbjct: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600

Query: 601 SGKRNPNDNHYSRSKHR 618
           SGKRNPNDNHYSRSKHR
Sbjct: 601 SGKRNPNDNHYSRSKHR 615

[Close]

BLAST of CsaV3_5G002950.1 vs. NCBI nr
Match: XP_023550466.1 (RNA-binding protein NOB1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1073.9 bits (2776), Expect = 1.9e-310
Identity = 556/620 (89.68%), Postives = 583/620 (94.03%), Query Frame = 0


Query: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60
           ME+PSPASCWSNVVK+Q APKPQHQTP+SSVQVFADSCKSS+GVAVAVVDANAIIQGG+K
Sbjct: 1   MESPSPASCWSNVVKSQSAPKPQHQTPTSSVQVFADSCKSSQGVAVAVVDANAIIQGGEK 60

Query: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120
           LS+ ADKFVSVPEVLDE+RDPVSRHRLAFVPF+LESMDPSP+ALNKVIKFARATGDLQTL
Sbjct: 61  LSTCADKFVSVPEVLDEVRDPVSRHRLAFVPFSLESMDPSPEALNKVIKFARATGDLQTL 120

Query: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180
           SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL
Sbjct: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180

Query: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240
           EQDAD PS  TSKILPLQDLNLNIIPSDGQSEDLSLE KD + LEH DETES S RSRRY
Sbjct: 181 EQDADAPSNSTSKILPLQDLNLNIIPSDGQSEDLSLEPKDGNYLEHQDETESASGRSRRY 240

Query: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300
           PPKKKEINIEGKKMVADGIDASQGQ DDNEG+WTPAVSRSTQRRY RRKARREYYESLAE
Sbjct: 241 PPKKKEINIEGKKMVADGIDASQGQCDDNEGEWTPAVSRSTQRRYIRRKARREYYESLAE 300

Query: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360
           KD  QDVETT+GDI VE   SGQS+DKISELPN+GN NES+I EGTNN+EN+S+ILKQMR
Sbjct: 301 KDGLQDVETTDGDIQVEPKSSGQSQDKISELPNSGNLNESRIEEGTNNSENLSQILKQMR 360

Query: 361 LEEDSLNALH---MSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMS 420
           LEEDSLN LH   + ASTKE  DESE E+AVAVEG+    KDEMEH+ED SQTNESVD S
Sbjct: 361 LEEDSLNTLHVEGLGASTKEEFDESELEDAVAVEGSDYTVKDEMEHIEDLSQTNESVDTS 420

Query: 421 NVDDVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH 480
           NVDDVSSDQSWMLRSLSESSVACVTGD+AMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH
Sbjct: 421 NVDDVSSDQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH 480

Query: 481 ACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGR 540
           ACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGR
Sbjct: 481 ACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGR 540

Query: 541 DAITKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQAL 600
           DAITKNLVLREDQLPQKFLHPKTKKK NKQGD+F+ VD+FFSHHNTDKRAPLQPPVRQAL
Sbjct: 541 DAITKNLVLREDQLPQKFLHPKTKKKANKQGDDFYPVDNFFSHHNTDKRAPLQPPVRQAL 600

Query: 601 AVFSGKRNPNDNHYSRSKHR 618
           AVFSGKRNPNDNHYSRSKH+
Sbjct: 601 AVFSGKRNPNDNHYSRSKHK 620

[Close]

BLAST of CsaV3_5G002950.1 vs. NCBI nr
Match: XP_022957812.1 (RNA-binding protein NOB1-like [Cucurbita moschata])

HSP 1 Score: 1063.9 bits (2750), Expect = 2.0e-307
Identity = 547/620 (88.23%), Postives = 575/620 (92.74%), Query Frame = 0


Query: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60
           ME+P PASCWSNVVK+QPAPKPQHQTP+S+VQVFADSCKSS+GVAVAVVDANAIIQGG+K
Sbjct: 1   MESPYPASCWSNVVKSQPAPKPQHQTPTSTVQVFADSCKSSQGVAVAVVDANAIIQGGEK 60

Query: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120
           LS+ ADKFVSVPEVLDE+RDPVSRHRLAFVPFTLESMDPSP+ALNKVIKFARATGDLQTL
Sbjct: 61  LSTCADKFVSVPEVLDEVRDPVSRHRLAFVPFTLESMDPSPEALNKVIKFARATGDLQTL 120

Query: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180
           SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKD+PGWGSNVPNLEEWEAL
Sbjct: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDLPGWGSNVPNLEEWEAL 180

Query: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240
           EQDAD P   TSKILPLQDLNLNI+PSDGQSEDLSLEHKD+ N EH DETES SRRSRRY
Sbjct: 181 EQDADAPLDTTSKILPLQDLNLNIVPSDGQSEDLSLEHKDEHNSEHPDETESGSRRSRRY 240

Query: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300
           PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRY RRKARREYYE+LAE
Sbjct: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYLRRKARREYYEALAE 300

Query: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360
           KDSQQDVETT+GD+ VE N SGQS+D+ISE P TGNGN+ QI EGTNNNEN+SEIL QMR
Sbjct: 301 KDSQQDVETTDGDVLVENNRSGQSQDQISE-PITGNGNDCQIAEGTNNNENLSEILNQMR 360

Query: 361 LEEDSLNALHM---SASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMS 420
           LEEDSLNA HM    AS             VA EG  D  KDEMEH+E +SQTNESVD S
Sbjct: 361 LEEDSLNAFHMEGLDASXXXXXXXXXXXXXVAAEGINDTAKDEMEHLEYSSQTNESVDTS 420

Query: 421 NVDDVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH 480
           N+DD+SSDQSWMLRSLSESSVACVTGD+AMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH
Sbjct: 421 NIDDISSDQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH 480

Query: 481 ACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGR 540
           ACYNVTAEIG+IFCPKCGNGGTLRKVAVTVGENGVVLA+RKPRITLRGTKFSLPLPQGGR
Sbjct: 481 ACYNVTAEIGKIFCPKCGNGGTLRKVAVTVGENGVVLASRKPRITLRGTKFSLPLPQGGR 540

Query: 541 DAITKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQAL 600
           DAITKNLVLREDQLPQKFLHPKTKKKVNKQGD+FFAVDDFFSHHNTDKRAPLQPPVRQAL
Sbjct: 541 DAITKNLVLREDQLPQKFLHPKTKKKVNKQGDDFFAVDDFFSHHNTDKRAPLQPPVRQAL 600

Query: 601 AVFSGKRNPNDNHYSRSKHR 618
           AVFSGKRNPNDNHYSRS H+
Sbjct: 601 AVFSGKRNPNDNHYSRSHHK 619

[Close]

BLAST of CsaV3_5G002950.1 vs. NCBI nr
Match: XP_022928869.1 (RNA-binding protein NOB1-like [Cucurbita moschata])

HSP 1 Score: 1058.5 bits (2736), Expect = 8.6e-306
Identity = 549/620 (88.55%), Postives = 578/620 (93.23%), Query Frame = 0


Query: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60
           ME+PSPASCWSNVVK+QPAPKPQHQTP+SSVQVFADSCKSS+GVAVAVVDANAIIQGG+K
Sbjct: 21  MESPSPASCWSNVVKSQPAPKPQHQTPTSSVQVFADSCKSSQGVAVAVVDANAIIQGGEK 80

Query: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120
           LS+ ADKFVSVPEVLDE+RDPVSRHRLAFVPF+LESMDPSP+ALNKVIKFARATGDLQTL
Sbjct: 81  LSTCADKFVSVPEVLDEVRDPVSRHRLAFVPFSLESMDPSPEALNKVIKFARATGDLQTL 140

Query: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180
           SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL
Sbjct: 141 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 200

Query: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240
           EQDAD PS  TS+ILPLQDLNLNIIPSDGQSEDLSLE KD + LEH DETES S RSRRY
Sbjct: 201 EQDADAPSNSTSRILPLQDLNLNIIPSDGQSEDLSLEPKDGNYLEHQDETESASGRSRRY 260

Query: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300
           PPKKKEINIEGKKMVADGIDASQGQ DDNEG+WTPAVSRSTQRRY RRKA     ESLAE
Sbjct: 261 PPKKKEINIEGKKMVADGIDASQGQCDDNEGEWTPAVSRSTQRRYIRRKAXXXXXESLAE 320

Query: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360
           KD  QDVETT+G+I VE   SGQS+DKISELPN+GN NES+I EGTNN+EN+S+ILKQMR
Sbjct: 321 KDGLQDVETTDGNIQVEPKSSGQSQDKISELPNSGNLNESRIEEGTNNSENLSQILKQMR 380

Query: 361 LEEDSLNALH---MSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMS 420
           LEEDSLN LH   + ASTKE  DESE E+AVAVEG+    KDEMEH+ED SQTNESVD S
Sbjct: 381 LEEDSLNTLHVEGLGASTKEEFDESELEDAVAVEGSDYTVKDEMEHIEDLSQTNESVDTS 440

Query: 421 NVDDVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH 480
           NVDDVSSDQSW LRSLSESSVACVTGD+AMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH
Sbjct: 441 NVDDVSSDQSWTLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCH 500

Query: 481 ACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGR 540
           ACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGR
Sbjct: 501 ACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGR 560

Query: 541 DAITKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQAL 600
           DAITKNLVLREDQLPQKFLHPKTKKK NKQGD+F+ VD+FFSHHNTDKRAPLQPPVRQAL
Sbjct: 561 DAITKNLVLREDQLPQKFLHPKTKKKANKQGDDFYPVDNFFSHHNTDKRAPLQPPVRQAL 620

Query: 601 AVFSGKRNPNDNHYSRSKHR 618
           AVFSGKRNPNDNHYSRSKH+
Sbjct: 621 AVFSGKRNPNDNHYSRSKHK 640

[Close]

BLAST of CsaV3_5G002950.1 vs. TAIR10
Match: AT5G41190.1 (Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117))

HSP 1 Score: 678.3 bits (1749), Expect = 4.4e-195
Identity = 365/630 (57.94%), Postives = 460/630 (73.02%), Query Frame = 0


Query: 4   PSPASCWSNVVKTQPAPKPQ-HQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDKLS 63
           P P S WS++VK  P  KP  +    +++     +CKS+KG+++AVVDANAII+G   L+
Sbjct: 3   PKPTSMWSSIVKKDPPSKPPVNDGAPAAILGMVGNCKSTKGISIAVVDANAIIEGRQSLT 62

Query: 64  SSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLSD 123
           + ADKFV+VPEVL EIRDP SR RLAF+PFT+++M+PSP++L+KVIKFARATGDLQ+LSD
Sbjct: 63  NFADKFVTVPEVLSEIRDPASRRRLAFIPFTIDTMEPSPESLSKVIKFARATGDLQSLSD 122

Query: 124 VDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQ 183
           VD+KLIAL+YTLE Q++GTK+LR+ PPP+  V  KRLPEKD+PGWGSNV NLEEWEALE 
Sbjct: 123 VDLKLIALSYTLEAQVYGTKNLRDVPPPIQTVRVKRLPEKDLPGWGSNVANLEEWEALEN 182

Query: 184 DADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRYPP 243
           + ++ S   SKILPL+DLN+NII SD  SE  S+    ++   H ++ +   ++ RRYPP
Sbjct: 183 ETEEKSNANSKILPLKDLNMNIIASDNVSEVGSVVSHTEN---HEEDVQEGGKKHRRYPP 242

Query: 244 KKKEINIEGKKMVADGIDASQGQYDDNE--GDWTPAVSRSTQRRYHRRKARREYYESLAE 303
           KK EI +EG KMV +G+DASQGQYDD++   DW PAVSRST  +Y RRKAR E+Y +LAE
Sbjct: 243 KKTEIKLEG-KMVVEGVDASQGQYDDDDDASDWRPAVSRSTHSKYLRRKARWEHYNALAE 302

Query: 304 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 363
           ++ Q+D                Q  DK     +T   NE+   +   N E+IS ILK MR
Sbjct: 303 QEIQKD----------------QEADKAR---HTKEANETHAKDSGKNGEDISSILKDMR 362

Query: 364 LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD 423
           LEE+SL AL      +E ++E+  E A  + G  D + D     E     N+++      
Sbjct: 363 LEEESLRAL------QEETEETNAE-ATLINGEDDIDHDIEVEAEGIDVANQALXXXXXX 422

Query: 424 DV--------------SSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQI 483
                           SS+QSW LR+LSESSVAC+TGDYAMQNV+LQMGLRLLAPGGMQI
Sbjct: 423 XXXXXXXXXXXXXXXGSSEQSWSLRALSESSVACITGDYAMQNVILQMGLRLLAPGGMQI 482

Query: 484 RQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGT 543
           RQLHRWILKCHACY VT EIGRIFCPKCGNGGTLRKVAVT+G NG ++AA KPRITLRGT
Sbjct: 483 RQLHRWILKCHACYTVTPEIGRIFCPKCGNGGTLRKVAVTIGANGAIIAACKPRITLRGT 542

Query: 544 KFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKR 603
           ++S+P+P+GGR+AITKNL+LREDQLPQK LHP+TKKK +K GDE+F  DD F +H++D++
Sbjct: 543 QYSIPMPKGGREAITKNLILREDQLPQKLLHPRTKKKASKPGDEYFVSDDVFLNHHSDRK 602

Query: 604 APLQPPVRQALAVFSGKRNPNDNHYSRSKH 617
           APLQPPVR+A++VFS KRNPNDNHYSRS H
Sbjct: 603 APLQPPVRKAMSVFSQKRNPNDNHYSRSMH 602

[Close]

BLAST of CsaV3_5G002950.1 vs. Swiss-Prot
Match: sp|Q5RBB3|NOB1_PONAB (RNA-binding protein NOB1 OS=Pongo abelii OX=9601 GN=NOB1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.5e-27
Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 0


Query: 438 VACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNG 497
           V CVT D+AMQNVLLQMGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN 
Sbjct: 231 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 290

Query: 498 GTLRKVAVTVGENGVVLA--ARKPRI-TLRGTKFSLPLPQGGRDAITKNLVLREDQLPQK 557
            TL+KV+VTV ++G +    +R P++   RG ++SLP P+GG+ AI  +L   + + PQ 
Sbjct: 291 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT-EDQRFPQL 350

Query: 558 FLHPKTKKKVNKQGDEFFA-VDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDN 610
            L  K ++K N    ++ A V  F  +  + + A LQ  VR + ++ +G+R  N N
Sbjct: 351 RLSRKARQKTNVFAPDYVAGVSPFVENDISSRSATLQ--VRDS-SLGAGRRRLNPN 401

HSP 2 Score: 79.0 bits (193), Expect = 2.1e-13
Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 48  VVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKV 107
           V DA A ++    L        ++ EV+ EIRD  +R RLA +P+ L   +P P+ +  V
Sbjct: 8   VADAGAFLRDA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLV 67

Query: 108 IKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGW 167
            +F++ TGD  +LS  DI+++ALTY LE +  G  HL++ P  V + ++ + PE  +   
Sbjct: 68  TEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPETPLHIS 127

Query: 168 GSNVPN 174
           G ++P+
Sbjct: 128 GFHLPS 132

[Close]

BLAST of CsaV3_5G002950.1 vs. Swiss-Prot
Match: sp|Q4R537|NOB1_MACFA (RNA-binding protein NOB1 OS=Macaca fascicularis OX=9541 GN=NOB1 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.8e-27
Identity = 72/176 (40.91%), Postives = 109/176 (61.93%), Query Frame = 0


Query: 438 VACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNG 497
           V CVT D+AMQNVLLQMGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN 
Sbjct: 232 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 291

Query: 498 GTLRKVAVTVGENGVVLA--ARKPRI-TLRGTKFSLPLPQGGRDAITKNLVLREDQLPQK 557
            TL+KV+VTV ++G +    +R P++   RG ++SLP P+GG+ A+  +L   + + PQ 
Sbjct: 292 KTLKKVSVTVSDDGALHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHLT-EDQRFPQL 351

Query: 558 FLHPKTKKKVNKQGDEFFA-VDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDN 610
            L  K ++K N    ++ A V  F  +  + + A LQ  VR +  + +G+R  N N
Sbjct: 352 RLSRKARQKTNVFAPDYIAGVSPFVENDVSSRSATLQ--VRDS-TLGAGRRRLNPN 402

HSP 2 Score: 78.2 bits (191), Expect = 3.6e-13
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 48  VVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKV 107
           V DA A ++    L        ++ EV+ EIRD  +R RLA +P+ L   +P P  +  V
Sbjct: 8   VADAGAFLRDA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPQYVRLV 67

Query: 108 IKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGW 167
            +F++ TGD  +LS  DI+++ALTY LE +  G  HL++ P  V + ++ + PE  +   
Sbjct: 68  TEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPETPLHIS 127

Query: 168 GSNVPN 174
           G ++P+
Sbjct: 128 GFHLPS 132

[Close]

BLAST of CsaV3_5G002950.1 vs. Swiss-Prot
Match: sp|Q9ULX3|NOB1_HUMAN (RNA-binding protein NOB1 OS=Homo sapiens OX=9606 GN=NOB1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-26
Identity = 72/176 (40.91%), Postives = 109/176 (61.93%), Query Frame = 0


Query: 438 VACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNG 497
           V C+T D+AMQNVLLQMGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN 
Sbjct: 232 VGCLTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 291

Query: 498 GTLRKVAVTVGENGVVLA--ARKPRI-TLRGTKFSLPLPQGGRDAITKNLVLREDQLPQK 557
            TL+KV+VTV ++G +    +R P++   RG ++SLP P+GG+ AI  +L   + + PQ 
Sbjct: 292 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT-EDQRFPQL 351

Query: 558 FLHPKTKKKVNKQGDEFFA-VDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDN 610
            L  K ++K N    ++ A V  F  +  + + A LQ  VR +  + +G+R  N N
Sbjct: 352 RLSQKARQKTNVFAPDYIAGVSPFVENDISSRSATLQ--VRDS-TLGAGRRRLNPN 402

HSP 2 Score: 78.2 bits (191), Expect = 3.6e-13
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 48  VVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKV 107
           V DA A ++    L        ++ EV+ EIRD  +R RLA +P+ L   +P P+ +  V
Sbjct: 8   VADAGAFLRHA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLV 67

Query: 108 IKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGW 167
            +F++ TGD  +LS  DI+++ALTY LE +  G  HL++ P  V + ++ + PE  +   
Sbjct: 68  TEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPETPLHIS 127

Query: 168 GSNVP 173
           G ++P
Sbjct: 128 GFHLP 131

[Close]

BLAST of CsaV3_5G002950.1 vs. Swiss-Prot
Match: sp|Q6VEU1|NOB1_RAT (RNA-binding protein NOB1 OS=Rattus norvegicus OX=10116 GN=Nob1 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.7e-26
Identity = 67/183 (36.61%), Postives = 106/183 (57.92%), Query Frame = 0


Query: 438 VACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNG 497
           V CVT D+AMQNVLLQMGL +LA  GM +R+   +IL+CH C+  T+++ R+FC  CGN 
Sbjct: 230 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN- 289

Query: 498 GTLRKVAVTVGENGVVLA--ARKPRI-TLRGTKFSLPLPQGGRDAITKNLVLREDQLPQK 557
            TL+KV+VT+ ++G +    +R P++   RG ++SLP P+GG+ A+  +L   + + PQ 
Sbjct: 290 KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHLT-EDQRFPQL 349

Query: 558 FLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDNHYSRS 617
            L  K ++K N    ++ A    F+ ++   R+ +       L     + NPN +     
Sbjct: 350 RLSHKARQKTNVFAPDYIAGVSPFAENDISSRSAILQVRDSMLGAGRRRLNPNASRKKFV 409

HSP 2 Score: 79.3 bits (194), Expect = 1.6e-13
Identity = 46/138 (33.33%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 48  VVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKV 107
           V DA A ++    L        ++ EV+ EIRD  +R RLA +P+ L   +P P+ +  V
Sbjct: 8   VADAGAFLRDA-PLQDIGKNIYTIREVVREIRDKATRRRLAVLPYELRFKEPFPEYVRLV 67

Query: 108 IKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGW 167
            +F++ TGD  +LS  DI+++ALTY LE +  G  HL++ P  V + ++ + PE  +   
Sbjct: 68  TEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKKEPEKVKVSSSIQHPETPLHIS 127

Query: 168 GSNVPNLEEWEALEQDAD 186
           G ++P+  + +AL++  D
Sbjct: 128 GFHLPS--KSKALQETVD 142

[Close]

BLAST of CsaV3_5G002950.1 vs. Swiss-Prot
Match: sp|Q3T042|NOB1_BOVIN (RNA-binding protein NOB1 OS=Bos taurus OX=9913 GN=NOB1 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.9e-26
Identity = 72/176 (40.91%), Postives = 109/176 (61.93%), Query Frame = 0


Query: 438 VACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNG 497
           V CVT D+AMQNVLLQMGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN 
Sbjct: 233 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 292

Query: 498 GTLRKVAVTVGENGVVLA--ARKPRI-TLRGTKFSLPLPQGGRDAITKNLVLREDQLPQK 557
            TL+KV+VTV ++G +    +R P++   RG ++SLP P+GG+ AI  +L   + + PQ 
Sbjct: 293 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLT-EDQRFPQL 352

Query: 558 FLHPKTKKKVNKQGDEFFA-VDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDN 610
            L  K ++K +    ++ A V  F  +  + + A LQ  VR +  + +G+R  N N
Sbjct: 353 RLSRKARQKTDVFAPDYVAGVSPFAENDISSRSATLQ--VRDS-TLGAGRRRLNPN 403

HSP 2 Score: 77.0 bits (188), Expect = 8.0e-13
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 48  VVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKV 107
           V DA A +     L        ++  V+ EIRD  +R RLA +P+ L   +P P+ +  V
Sbjct: 8   VADAGAFLLDA-ALQDIGKNIYTIRNVISEIRDKATRRRLAVLPYELRFKEPFPEYVRLV 67

Query: 108 IKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGW 167
            +F++ TGD  +LS  DI+++ALTY LE +  G  HL++ P  V + ++ + PE  +   
Sbjct: 68  TEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSIQHPETPLHVS 127

Query: 168 GSNVPN 174
           G ++P+
Sbjct: 128 GFHLPS 132

[Close]

BLAST of CsaV3_5G002950.1 vs. TrEMBL
Match: tr|A0A0A0KML5|A0A0A0KML5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154760 PE=4 SV=1)

HSP 1 Score: 1208.4 bits (3125), Expect = 0.0e+00
Identity = 617/617 (100.00%), Postives = 617/617 (100.00%), Query Frame = 0


Query: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60
           METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK
Sbjct: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60

Query: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120
           LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL
Sbjct: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120

Query: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180
           SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL
Sbjct: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180

Query: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240
           EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY
Sbjct: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240

Query: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300
           PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE
Sbjct: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300

Query: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360
           KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR
Sbjct: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360

Query: 361 LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD 420
           LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD
Sbjct: 361 LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD 420

Query: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480
           DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY
Sbjct: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480

Query: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540
           NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI
Sbjct: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540

Query: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600
           TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF
Sbjct: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600

Query: 601 SGKRNPNDNHYSRSKHR 618
           SGKRNPNDNHYSRSKHR
Sbjct: 601 SGKRNPNDNHYSRSKHR 617

[Close]

BLAST of CsaV3_5G002950.1 vs. TrEMBL
Match: tr|A0A1S3ATJ5|A0A1S3ATJ5_CUCME (RNA-binding protein NOB1 OS=Cucumis melo OX=3656 GN=LOC103482733 PE=4 SV=1)

HSP 1 Score: 1149.4 bits (2972), Expect = 0.0e+00
Identity = 594/617 (96.27%), Postives = 601/617 (97.41%), Query Frame = 0


Query: 1   METPSPASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60
           ME+PSPASCWSNVVKTQPAPKPQHQ+P+SSVQVFADSCKSSKGVAVAVVDANAIIQGGDK
Sbjct: 1   MESPSPASCWSNVVKTQPAPKPQHQSPTSSVQVFADSCKSSKGVAVAVVDANAIIQGGDK 60

Query: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120
           LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL
Sbjct: 61  LSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTL 120

Query: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180
           SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL
Sbjct: 121 SDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEAL 180

Query: 181 EQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRY 240
           EQDADDPS LTSKILPLQDLNLN IPSDGQSEDLSLEHKD DN EHLDETESDSRRSRRY
Sbjct: 181 EQDADDPSSLTSKILPLQDLNLNTIPSDGQSEDLSLEHKDADNSEHLDETESDSRRSRRY 240

Query: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAE 300
           PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRY+RRKARREYYESLAE
Sbjct: 241 PPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYNRRKARREYYESLAE 300

Query: 301 KDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQMR 360
           KD QQD+ETTNGDI VE NGSGQSEDKISELPNTGNGNESQI E   NNEN+SEILKQMR
Sbjct: 301 KDIQQDIETTNGDIQVESNGSGQSEDKISELPNTGNGNESQIEEEMFNNENLSEILKQMR 360

Query: 361 LEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNVD 420
           LEEDSLNALHMSASTKEGS ESEGEN +AVEG KDA KDEMEHMEDASQTNESVD SNVD
Sbjct: 361 LEEDSLNALHMSASTKEGS-ESEGEN-MAVEGIKDAVKDEMEHMEDASQTNESVDTSNVD 420

Query: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480
           DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY
Sbjct: 421 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 480

Query: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540
           NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI
Sbjct: 481 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 540

Query: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600
           TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF
Sbjct: 541 TKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALAVF 600

Query: 601 SGKRNPNDNHYSRSKHR 618
           SGKRNPNDNHYSRSKHR
Sbjct: 601 SGKRNPNDNHYSRSKHR 615

[Close]

BLAST of CsaV3_5G002950.1 vs. TrEMBL
Match: tr|A0A1R3GKR3|A0A1R3GKR3_9ROSI (Nin one binding (NOB1) Zn-ribbon-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_34438 PE=4 SV=1)

HSP 1 Score: 818.1 bits (2112), Expect = 1.3e-233
Identity = 433/618 (70.06%), Postives = 513/618 (83.01%), Query Frame = 0


Query: 6   PASCWSNVVKTQPAPKPQHQTPSSSV-QVFADSCKSSKGVAVAVVDANAIIQGGDKLSSS 65
           PA CWSN++K+QP PKPQ Q  +++  Q+F +SCKS+KG+AVAVVDANAII+GG+KL++S
Sbjct: 13  PAPCWSNILKSQP-PKPQTQNQTAATNQLFVESCKSTKGIAVAVVDANAIIEGGEKLTNS 72

Query: 66  ADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLSDVD 125
           ADKFV+VPEVL EIRDPVSR+RLAF+PF+++SM+PSPDALNKVIKFARATGDLQTLSDVD
Sbjct: 73  ADKFVTVPEVLAEIRDPVSRYRLAFIPFSIDSMEPSPDALNKVIKFARATGDLQTLSDVD 132

Query: 126 IKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQDA 185
           +KLIALTYTLE QIHG+ H+R  PPPVH+VN KRLPEKD+PGWGSNVPNLEEWEAL+ +A
Sbjct: 133 LKLIALTYTLEAQIHGSNHIRNAPPPVHVVNVKRLPEKDLPGWGSNVPNLEEWEALDGEA 192

Query: 186 DDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRYPPKK 245
           +D +   S+ILPL+DLN+N++PSD  SE+ S+E   + + E+ ++ E   RR RRY P+K
Sbjct: 193 EDGTNTNSRILPLKDLNMNVVPSDNHSENGSVETMGETHSENQEDAEQGFRRPRRYLPQK 252

Query: 246 KEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAEKDSQ 305
           KE+ IEGKKMVADGIDASQGQ DDN  DW PAVSRST RR+ RRKARREYYE+L EKD Q
Sbjct: 253 KEVKIEGKKMVADGIDASQGQLDDNGDDWRPAVSRSTHRRFLRRKARREYYEALVEKDCQ 312

Query: 306 QDVETTNGDIHVE-FNGSGQSEDKISELPNTGNG--NESQIGEGTNNNENISEILKQMRL 365
           +D+E +    +VE  +G+ Q   + +E  ++ NG   E++  E    +E++S ILKQMRL
Sbjct: 313 EDIEKSKDKNNVEDASGTDQLLPQSAEEAHSKNGISEEAERTEAGKGDEDLSSILKQMRL 372

Query: 366 EEDSLNALHMSASTKEGSDESEGENAVAVEGTK-DAEKDEMEHMEDASQTNESVDMSNVD 425
           EEDSLNAL  +   +   D+      +AVEG K D   +E++  E +SQTNE+VD S  D
Sbjct: 373 EEDSLNALQEAEEVENTVDDDVN---LAVEGDKEDMVNEELDQFEMSSQTNETVDASYAD 432

Query: 426 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 485
           DVSS+QSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRW+LKCHACY
Sbjct: 433 DVSSEQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWVLKCHACY 492

Query: 486 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 545
            VTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLA+ +PRI+LRGTKFSLPLPQGGRDAI
Sbjct: 493 TVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLASHRPRISLRGTKFSLPLPQGGRDAI 552

Query: 546 TKNLVLREDQLPQKFLHPKTKKKVNKQG-DEFFAVDDFFSHHNTDKRAPLQPPVRQALAV 605
           TKN VLREDQLPQKFL+PKTKKKVNKQG D+ F     F+HH TDKRAPLQPPVR+ALAV
Sbjct: 553 TKNFVLREDQLPQKFLYPKTKKKVNKQGDDDLFMAGVAFTHH-TDKRAPLQPPVRKALAV 612

Query: 606 FSGKRNPNDNHYSRSKHR 618
           FSGKRNPNDNHYSRSK +
Sbjct: 613 FSGKRNPNDNHYSRSKQK 625

[Close]

BLAST of CsaV3_5G002950.1 vs. TrEMBL
Match: tr|A0A1R3IA64|A0A1R3IA64_COCAP (Nin one binding (NOB1) Zn-ribbon-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13635 PE=4 SV=1)

HSP 1 Score: 803.1 bits (2073), Expect = 4.3e-229
Identity = 429/618 (69.42%), Postives = 504/618 (81.55%), Query Frame = 0


Query: 6   PASCWSNVVKTQPAPKPQHQTPSSSV-QVFADSCKSSKGVAVAVVDANAIIQGGDKLSSS 65
           PA CWSN++K+QP PKPQ Q  +++  Q+F +SCKS+KG+AVAVVDANAII+GG+KL++S
Sbjct: 13  PAPCWSNILKSQP-PKPQTQNQTAATNQLFVESCKSTKGIAVAVVDANAIIEGGEKLTNS 72

Query: 66  ADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLSDVD 125
           ADKFV+VPEVL EIRDPVSRHRLAF+PF+++SM+PSPDALNKVIKFARATGDLQTLSDVD
Sbjct: 73  ADKFVTVPEVLAEIRDPVSRHRLAFIPFSIDSMEPSPDALNKVIKFARATGDLQTLSDVD 132

Query: 126 IKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQDA 185
           +KLIALTYTLE QIHG+ H+R  PPPVH+VN KRLPEKD+PGWG+NVPNLEEWEAL+ +A
Sbjct: 133 LKLIALTYTLEAQIHGSNHIRNVPPPVHVVNVKRLPEKDLPGWGNNVPNLEEWEALDGEA 192

Query: 186 DDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRYPPKK 245
           +D +   S+ILPL+DLN+N++PSD  SE  S+E   + + E+ ++ E   RR RRY P+K
Sbjct: 193 EDATNTNSRILPLKDLNMNVVPSDNHSEKGSVETMGETHSENQEDAEQSFRRPRRYLPQK 252

Query: 246 KEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAEKDSQ 305
           KE+ IEGKKMVADGIDASQGQ DDN  DW PAVSRST RR+ RRKARRE+YE+L EKD Q
Sbjct: 253 KEVKIEGKKMVADGIDASQGQLDDNGDDWRPAVSRSTHRRFLRRKARREHYEALVEKDCQ 312

Query: 306 QDVETTNGDIHVE-FNGSGQSEDKISELPNTGNG--NESQIGEGTNNNENISEILKQMRL 365
           +D+E +    +VE   G+ Q   + +E  ++ NG   E++  E    +E++S ILKQMRL
Sbjct: 313 EDMEKSKDKNNVEDATGTDQLLPQSAEEAHSKNGISEEAERTEAGKGDEDLSSILKQMRL 372

Query: 366 EEDSLNALHMSASTKEGSDESEGENAVAVEGTK-DAEKDEMEHMEDASQTNESVDMSNVD 425
           EEDS   L                   AVEG K D   +E++  E +SQTNE+VD S  D
Sbjct: 373 EEDS---LXXXXXXXXXXXXXXXXXXXAVEGDKEDLVNEELDQFEMSSQTNETVDASYTD 432

Query: 426 DVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACY 485
           DVSS+QSWMLRSLSESSVACVTGD+AMQNVLLQMGLRLLAPGGMQIRQLHRW+LKCHACY
Sbjct: 433 DVSSEQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWVLKCHACY 492

Query: 486 NVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAI 545
            VTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLA+ +PRITLRGTKFSLPLPQGGRDAI
Sbjct: 493 TVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLASHRPRITLRGTKFSLPLPQGGRDAI 552

Query: 546 TKNLVLREDQLPQKFLHPKTKKKVNKQG-DEFFAVDDFFSHHNTDKRAPLQPPVRQALAV 605
           TKNLVLREDQLPQKFL+PKTKKKVNKQG D+ F     F+HH TDKRAPLQPPVR+ALAV
Sbjct: 553 TKNLVLREDQLPQKFLYPKTKKKVNKQGDDDLFMAGVAFTHH-TDKRAPLQPPVRKALAV 612

Query: 606 FSGKRNPNDNHYSRSKHR 618
           FSGKRNPNDNHYSRSK +
Sbjct: 613 FSGKRNPNDNHYSRSKQK 625

[Close]

BLAST of CsaV3_5G002950.1 vs. TrEMBL
Match: tr|A0A2P5ELR3|A0A2P5ELR3_9ROSA (D-site 20S pre-rRNA nuclease Nob OS=Trema orientalis OX=63057 GN=TorRG33x02_177660 PE=4 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 5.4e-224
Identity = 414/619 (66.88%), Postives = 483/619 (78.03%), Query Frame = 0


Query: 2   ETPSP--ASCWSNVVKTQPAPKPQHQTPSSSVQVFADSCKSSKGVAVAVVDANAIIQGGD 61
           ETP+P  A CWS+V+K Q APKPQ+  P+++V VFA  C S+KG+AVAVVDANAII+GGD
Sbjct: 3   ETPNPSQAPCWSSVLKNQTAPKPQNPNPNATVGVFAQPCNSTKGIAVAVVDANAIIEGGD 62

Query: 62  KLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQT 121
           KLS  ADKFVSVPEV+DE+RDPVSRHRLAFVPF++++M+P+P++LN+VIKFARATGDLQT
Sbjct: 63  KLSQCADKFVSVPEVMDEVRDPVSRHRLAFVPFSVQTMEPTPESLNRVIKFARATGDLQT 122

Query: 122 LSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEA 181
           LSDVDIKLIALTYTLE QIHGT HLR+CPPP+H VN KRLPEK++PGWGSNVPNLEEWEA
Sbjct: 123 LSDVDIKLIALTYTLEAQIHGTVHLRDCPPPIHTVNVKRLPEKELPGWGSNVPNLEEWEA 182

Query: 182 LEQDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRR 241
           LE   +D S   S+ILPL+DLNLN+I   G    L             D  E+D R  R 
Sbjct: 183 LEHQGEDKSNDGSRILPLKDLNLNVISDSGSEYQLE------------DGEETDGRPKRI 242

Query: 242 YPPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLA 301
           YPP+KKEINIEGKKMVADGIDASQG++DD+  DW PAVSRST RR+ RRKARREYYE+++
Sbjct: 243 YPPRKKEINIEGKKMVADGIDASQGEFDDDADDWMPAVSRSTHRRFLRRKARREYYEAMS 302

Query: 302 EKDSQQDVETTNGDIHVEFNGSGQSEDKISELPNTGNGNESQIGEGTNNNENISEILKQM 361
           EKD       T+G    E  G                          N+ E++S IL QM
Sbjct: 303 EKDG------TSG--KNEITGEDNGGQXXXXXXXXXXXXXXXXXXXXNDEESLSTILDQM 362

Query: 362 RLEEDSLNALHMSASTKEGSDESEGENAVAVEGTKDAEKDEMEHMEDASQTNESVDMSNV 421
           RLEEDSL  L      ++G+  +EG++        D   + ++H+E +S+ N SVD SN 
Sbjct: 363 RLEEDSLKGL------QDGNGSAEGDHT-------DVISEGIDHLELSSEINVSVDASNA 422

Query: 422 -DDVSSDQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHA 481
            DD SS+QSW LRSLSESSVAC+T D+AMQNV+LQMGLRLLAPGGMQIRQLHRW+L+CHA
Sbjct: 423 EDDDSSEQSWTLRSLSESSVACITSDFAMQNVILQMGLRLLAPGGMQIRQLHRWVLRCHA 482

Query: 482 CYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRD 541
           CY VTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAAR+PRITLRGTKFSLPLPQGGRD
Sbjct: 483 CYMVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARRPRITLRGTKFSLPLPQGGRD 542

Query: 542 AITKNLVLREDQLPQKFLHPKTKKKVNKQGDEFFAVDDFFSHHNTDKRAPLQPPVRQALA 601
           A+TKNL+LREDQLPQK L+PKTKKK  K+GDEFF  DD FSHH++DKRAP QPPVR+ALA
Sbjct: 543 AVTKNLILREDQLPQKLLYPKTKKKATKEGDEFFVSDDIFSHHHSDKRAPFQPPVRKALA 588

Query: 602 VFSGKRNPNDNHYSRSKHR 618
           VFSGKRNPNDNHYSRSKH+
Sbjct: 603 VFSGKRNPNDNHYSRSKHK 588

The following BLAST results are available for this feature:

BLAST of CsaV3_5G002950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143919.1	0.0e+00	100.00	PREDICTED: RNA-binding protein NOB1 [Cucumis sativus] >KGN50114.1 hypothetical p...	[more]
XP_008437247.1	0.0e+00	96.27	PREDICTED: RNA-binding protein NOB1 [Cucumis melo]	[more]
XP_023550466.1	1.9e-310	89.68	RNA-binding protein NOB1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957812.1	2.0e-307	88.23	RNA-binding protein NOB1-like [Cucurbita moschata]	[more]
XP_022928869.1	8.6e-306	88.55	RNA-binding protein NOB1-like [Cucurbita moschata]	[more]

BLAST of CsaV3_5G002950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41190.1	4.4e-195	57.94	Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA ...	[more]

BLAST of CsaV3_5G002950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5RBB3\|NOB1_PONAB	7.5e-27	41.48	RNA-binding protein NOB1 OS=Pongo abelii OX=9601 GN=NOB1 PE=2 SV=1	[more]
sp\|Q4R537\|NOB1_MACFA	9.8e-27	40.91	RNA-binding protein NOB1 OS=Macaca fascicularis OX=9541 GN=NOB1 PE=2 SV=1	[more]
sp\|Q9ULX3\|NOB1_HUMAN	1.3e-26	40.91	RNA-binding protein NOB1 OS=Homo sapiens OX=9606 GN=NOB1 PE=1 SV=1	[more]
sp\|Q6VEU1\|NOB1_RAT	3.7e-26	36.61	RNA-binding protein NOB1 OS=Rattus norvegicus OX=10116 GN=Nob1 PE=2 SV=1	[more]
sp\|Q3T042\|NOB1_BOVIN	4.9e-26	40.91	RNA-binding protein NOB1 OS=Bos taurus OX=9913 GN=NOB1 PE=2 SV=1	[more]

BLAST of CsaV3_5G002950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KML5\|A0A0A0KML5_CUCSA	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154760 PE=4 SV=1	[more]
tr\|A0A1S3ATJ5\|A0A1S3ATJ5_CUCME	0.0e+00	96.27	RNA-binding protein NOB1 OS=Cucumis melo OX=3656 GN=LOC103482733 PE=4 SV=1	[more]
tr\|A0A1R3GKR3\|A0A1R3GKR3_9ROSI	1.3e-233	70.06	Nin one binding (NOB1) Zn-ribbon-like protein OS=Corchorus olitorius OX=93759 GN...	[more]
tr\|A0A1R3IA64\|A0A1R3IA64_COCAP	4.3e-229	69.42	Nin one binding (NOB1) Zn-ribbon-like protein OS=Corchorus capsularis OX=210143 ...	[more]
tr\|A0A2P5ELR3\|A0A2P5ELR3_9ROSA	5.4e-224	66.88	D-site 20S pre-rRNA nuclease Nob OS=Trema orientalis OX=63057 GN=TorRG33x02_1776...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0000469	cleavage involved in rRNA processing
GO:0042274	ribosomal small subunit biogenesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004521	endoribonuclease activity

Vocabulary: **INTERPRO**
Term	Definition
IPR014881	NOB1_Zn-bd
IPR017117	Nob1_euk
IPR033411	Ribonuclease_PIN
IPR036283	NOB1_Zf-like_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0051252	regulation of RNA metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004521	endoribonuclease activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_5G002950	CsaV3_5G002950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G002950.1	CsaV3_5G002950.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G002950.1.exon1	CsaV3_5G002950.1.exon1	exon
CsaV3_5G002950.1.exon2	CsaV3_5G002950.1.exon2	exon
CsaV3_5G002950.1.exon3	CsaV3_5G002950.1.exon3	exon
CsaV3_5G002950.1.exon4	CsaV3_5G002950.1.exon4	exon
CsaV3_5G002950.1.exon5	CsaV3_5G002950.1.exon5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G002950.1.cds1	CsaV3_5G002950.1.cds1	CDS
CsaV3_5G002950.1.cds2	CsaV3_5G002950.1.cds2	CDS
CsaV3_5G002950.1.cds3	CsaV3_5G002950.1.cds3	CDS
CsaV3_5G002950.1.cds4	CsaV3_5G002950.1.cds4	CDS
CsaV3_5G002950.1.cds5	CsaV3_5G002950.1.cds5	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036283	NOB1 zinc finger-like superfamily	GENE3D	G3DSA:3.30.40.120		coord: 460..535 e-value: 1.3E-20 score: 74.8
IPR036283	NOB1 zinc finger-like superfamily	SUPERFAMILY	SSF144206	NOB1 zinc finger-like	coord: 466..529
None	No IPR available	GENE3D	G3DSA:3.40.50.1010		coord: 38..147 e-value: 1.8E-24 score: 87.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..419
None	No IPR available	PANTHER	PTHR12814	RNA-BINDING PROTEIN NOB1	coord: 37..615
None	No IPR available	CDD	cd09876	PIN_Nob1	coord: 54..157 e-value: 2.7398E-38 score: 136.177
IPR033411	Ribonuclease, PIN domain	PFAM	PF17146	PIN_6	coord: 48..134 e-value: 3.9E-25 score: 88.1
IPR017117	Ribonuclease Nob1, eukaryote	PIRSF	PIRSF037125	Nob1	coord: 26..617 e-value: 7.0E-130 score: 431.9
IPR014881	Nin one binding (NOB1) Zn-ribbon-like	PFAM	PF08772	NOB1_Zn_bind	coord: 466..536 e-value: 8.7E-23 score: 80.2