CsaV3_4G037970.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G037970.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 26573424 .. 26573844 (+)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGGTAGCTCATTCCCACTGCTGATTACCCATTTTCTTGTTGTTAGGTTTTACCCTTTTCATTTGCTTCCATCAGCTTTTTGATTGTTTTATTATATACTTCTGTAATCACTTGTGGGAATTCCGTTTTGTTGGGTCAGATTGA

mRNA sequence

ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGATTGA

Coding sequence (CDS)

ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGATTGA

Protein sequence

MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTSSTLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD
Homology
[Close]
BLAST of CsaV3_4G037970.1 vs. NCBI nr
Match: KGN55575.1 (hypothetical protein Csa_4G675250 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 6.8e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60
          MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS
Sbjct: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60

Query: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 95
          STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD
Sbjct: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 94

[Close]
BLAST of CsaV3_4G037970.1 vs. TrEMBL
Match: tr|A0A0A0L0W1|A0A0A0L0W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G675250 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.5e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60
          MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS
Sbjct: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60

Query: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 95
          STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD
Sbjct: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 94

The following BLAST results are available for this feature:
BLAST of CsaV3_4G037970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55575.16.8e-45100.00hypothetical protein Csa_4G675250 [Cucumis sativus][more]
BLAST of CsaV3_4G037970.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037970.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037970.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0W1|A0A0A0L0W1_CUCSA4.5e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G675250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G037970CsaV3_4G037970gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G037970.1.exon1CsaV3_4G037970.1.exon1exon
CsaV3_4G037970.1.exon2CsaV3_4G037970.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G037970.1.cds1CsaV3_4G037970.1.cds1CDS
CsaV3_4G037970.1.cds2CsaV3_4G037970.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G037970.1CsaV3_4G037970.1-proteinpolypeptide