CsaV3_4G037370.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G037370.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	WUSCHEL-related homeobox 8-like
Location	chr4 : 26192300 .. 26193473 (+)
Sequence length	945

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGCAGAATCAGCAGCAACAGAATCAAACAGAGCAATTGCAAATGCAGGTGGAGCAATTGAGCAACGCCGATGGAGTTGGTGGTCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCAATCACCGCCCAACAGGACCTTGCGGGTCTCTCTTTTCTTATCTTTTTGCATTACTCTTCTCATTGATATTCTGTTTCATCTCCATTTGTTTGGACCTACAACAATAGTTTTTTCTGTTAGATCTACTTGTCGTATAGGAAGTGAACTTTAAGACTAAATCTGGGTTTTAGAAAGTATCCTCCTCTAGTTCTGTTTCTGTTAATTGATTAAACTTTAATATTACCTGTTCCGTTTGCTGTAAACTATAATTGTAGGAATAAGCGGGACCCTTGCTCTTTGTTTGTTTCATCATCAGAACCATCTACTTATCTTTCCTGTTTCTCAATGCCTGGAGAAATGGACTCCTTTGGAAAATGAATTTTGCTCCTTAAACAGCTTTTATGCTTACTGGTTTCCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACACCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTCTATAATTGGTTTCAAAATAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAACATTTGGTTCCGAAGTCCGGCAATATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCGCAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATACCAGTCAGATGACTCCAATACAAAATCATAGTATGTCACTCTGTTTTTTCAAGAGCTATACATTTGAACATTTCTTGAATTTTCTTCATCGGAAATTTCCATAA

mRNA sequence

ATGGAGTGGCAGAATCAGCAGCAACAGAATCAAACAGAGCAATTGCAAATGCAGGTGGAGCAATTGAGCAACGCCGATGGAGTTGGTGGTCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCAATCACCGCCCAACAGGACCTTGCGGGAATAAGCGGGACCCTTGCTCTTTGTTTGTTTCATCATCAGAACCATCTACTTATCTTTCCTGTTTCTCAATGCCTGGAGAAATGGACTCCTTTGGAAAATGAATTTTGCTCCTTAAACAGCTTTTATGCTTACTGGTTTCCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACACCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTCTATAATTGGTTTCAAAATAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAACATTTGGTTCCGAAGTCCGGCAATATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCGCAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATACCAGTCAGATGACTCCAATACAAAATCATAGTATGTCACTCTGTTTTTTCAAGAGCTATACATTTGAACATTTCTTGAATTTTCTTCATCGGAAATTTCCATAA

Coding sequence (CDS)

ATGGAGTGGCAGAATCAGCAGCAACAGAATCAAACAGAGCAATTGCAAATGCAGGTGGAGCAATTGAGCAACGCCGATGGAGTTGGTGGTCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCAATCACCGCCCAACAGGACCTTGCGGGAATAAGCGGGACCCTTGCTCTTTGTTTGTTTCATCATCAGAACCATCTACTTATCTTTCCTGTTTCTCAATGCCTGGAGAAATGGACTCCTTTGGAAAATGAATTTTGCTCCTTAAACAGCTTTTATGCTTACTGGTTTCCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACACCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTCTATAATTGGTTTCAAAATAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAACATTTGGTTCCGAAGTCCGGCAATATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCGCAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATACCAGTCAGATGACTCCAATACAAAATCATAGTATGTCACTCTGTTTTTTCAAGAGCTATACATTTGAACATTTCTTGAATTTTCTTCATCGGAAATTTCCATAA

Protein sequence

MEWQNQQQQNQTEQLQMQVEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNHSMSLCFFKSYTFEHFLNFLHRKFP

Homology

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BLAST of CsaV3_4G037370.1 vs. NCBI nr
Match: XP_004145546.1 (PREDICTED: WUSCHEL-related homeobox 8-like [Cucumis sativus] >KGN55511.1 hypothetical protein Csa_4G663700 [Cucumis sativus])

HSP 1 Score: 433.0 bits (1112), Expect = 9.0e-118
Identity = 242/290 (83.45%), Postives = 242/290 (83.45%), Query Frame = 0


Query: 1   MEWQNQQQXXXXXXXXXXXEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVE 60
           MEWQNQQQXXXXXXXXXXXEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVE
Sbjct: 1   MEWQNQQQXXXXXXXXXXXEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVE 60

Query: 61  MHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFP 120
           MHKAITAQQDLA                                                
Sbjct: 61  MHKAITAQQDLA------------------------------------------------ 120

Query: 121 GMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQL 180
           GMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQL
Sbjct: 121 GMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQL 180

Query: 181 TQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEH 240
           TQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEH
Sbjct: 181 TQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEH 240

Query: 241 LVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 291
           LVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH
Sbjct: 241 LVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 242

[Close]

BLAST of CsaV3_4G037370.1 vs. NCBI nr
Match: XP_008452975.1 (PREDICTED: WUSCHEL-related homeobox 8-like [Cucumis melo])

HSP 1 Score: 412.1 bits (1058), Expect = 1.6e-111
Identity = 219/271 (80.81%), Postives = 220/271 (81.18%), Query Frame = 0


Query: 20  EQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLA 79
           EQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLA       
Sbjct: 4   EQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLA------- 63

Query: 80  LCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGH 139
                                                    GMRLGNLYCDPIMASAAGH
Sbjct: 64  -----------------------------------------GMRLGNLYCDPIMASAAGH 123

Query: 140 KITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRR 199
           KITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRR
Sbjct: 124 KITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRR 183

Query: 200 ARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEI 259
           ARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE FQTYEHLVP+SGNMYSQRTDLSTEI
Sbjct: 184 ARSKRKQANSLPNNADSEPETEVDSPKEKKTKPETFQTYEHLVPQSGNMYSQRTDLSTEI 226

Query: 260 LSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 291
           LSFDAQSNKGE MFQSFGSGH SQMTPIQNH
Sbjct: 244 LSFDAQSNKGESMFQSFGSGHISQMTPIQNH 226

[Close]

BLAST of CsaV3_4G037370.1 vs. NCBI nr
Match: XP_023536295.1 (WUSCHEL-related homeobox 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 2.0e-101
Identity = 218/294 (74.15%), Postives = 226/294 (76.87%), Query Frame = 0


Query: 1   MEWQN---QQQXXXXXXXXXXXEQLSN-ADGVGGLYVKVMTDEQMELLRQQISVYASICE 60
           MEWQN      XXXXXXXXXXX QLSN ADGVGGLYVKVMTDEQMELLRQQISVYASIC+
Sbjct: 2   MEWQNXXXXXXXXXXXXXXXXXXQLSNAADGVGGLYVKVMTDEQMELLRQQISVYASICD 61

Query: 61  QLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYA 120
           QLVEMHKAITAQQDLA                                            
Sbjct: 62  QLVEMHKAITAQQDLA-------------------------------------------- 121

Query: 121 YWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDI 180
               GMRLGNLYCDPIMA AAGHKITARQRWTPTPVQLQILE+IFDEGNGTPSKQKIKDI
Sbjct: 122 ----GMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDI 181

Query: 181 TLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQ 240
           TLQL Q+GQISEANVYNWFQNRRARSKRKQANS+PNNADSEPETEVDSPKEKKTKPE FQ
Sbjct: 182 TLQLIQYGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQ 241

Query: 241 TYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 291
            YEH VPK  N+YSQR++L  EILSFD Q+NKGEPMFQSFGSGH SQMTP QNH
Sbjct: 242 AYEHFVPKLSNVYSQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNH 247

[Close]

BLAST of CsaV3_4G037370.1 vs. NCBI nr
Match: XP_022936919.1 (WUSCHEL-related homeobox 8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 374.0 bits (959), Expect = 5.0e-100
Identity = 216/294 (73.47%), Postives = 224/294 (76.19%), Query Frame = 0


Query: 1   MEWQN---QQQXXXXXXXXXXXEQLSN-ADGVGGLYVKVMTDEQMELLRQQISVYASICE 60
           MEWQN      XXXXXXXXXXX QLSN ADGVGGLYVKVMTDEQMELLRQQISVYASIC+
Sbjct: 2   MEWQNXXXXXXXXXXXXXXXXXXQLSNAADGVGGLYVKVMTDEQMELLRQQISVYASICD 61

Query: 61  QLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYA 120
           QLVEMHKAITAQQDLA                                            
Sbjct: 62  QLVEMHKAITAQQDLA-------------------------------------------- 121

Query: 121 YWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDI 180
               GMRLGNLYCDPIMA AAGHKITARQRWTPTPVQLQILE+IFDEGNGTPSKQKIKDI
Sbjct: 122 ----GMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDI 181

Query: 181 TLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQ 240
           TLQL Q+GQISEANVYNWFQNRRARSKRKQANS+PNNADSEPETEVDSPKEKKTKPE  Q
Sbjct: 182 TLQLIQYGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETLQ 241

Query: 241 TYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 291
            YEH VPK  N+Y QR++L  EILSFD Q+NKGEPMFQSFGSGH SQMTP QNH
Sbjct: 242 DYEHFVPKLSNVYPQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNH 247

[Close]

BLAST of CsaV3_4G037370.1 vs. NCBI nr
Match: XP_022936920.1 (WUSCHEL-related homeobox 8-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 374.0 bits (959), Expect = 5.0e-100
Identity = 216/294 (73.47%), Postives = 224/294 (76.19%), Query Frame = 0


Query: 1   MEWQN---QQQXXXXXXXXXXXEQLSN-ADGVGGLYVKVMTDEQMELLRQQISVYASICE 60
           MEWQN      XXXXXXXXXXX QLSN ADGVGGLYVKVMTDEQMELLRQQISVYASIC+
Sbjct: 1   MEWQNXXXXXXXXXXXXXXXXXXQLSNAADGVGGLYVKVMTDEQMELLRQQISVYASICD 60

Query: 61  QLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYA 120
           QLVEMHKAITAQQDLA                                            
Sbjct: 61  QLVEMHKAITAQQDLA-------------------------------------------- 120

Query: 121 YWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDI 180
               GMRLGNLYCDPIMA AAGHKITARQRWTPTPVQLQILE+IFDEGNGTPSKQKIKDI
Sbjct: 121 ----GMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDI 180

Query: 181 TLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQ 240
           TLQL Q+GQISEANVYNWFQNRRARSKRKQANS+PNNADSEPETEVDSPKEKKTKPE  Q
Sbjct: 181 TLQLIQYGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETLQ 240

Query: 241 TYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 291
            YEH VPK  N+Y QR++L  EILSFD Q+NKGEPMFQSFGSGH SQMTP QNH
Sbjct: 241 DYEHFVPKLSNVYPQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNH 246

[Close]

BLAST of CsaV3_4G037370.1 vs. TAIR10
Match: AT4G35550.1 (WUSCHEL related homeobox 13)

HSP 1 Score: 185.3 bits (469), Expect = 5.9e-47
Identity = 103/201 (51.24%), Postives = 121/201 (60.20%), Query Frame = 0


Query: 1   MEWQNQQQXXXXXXXXXXXEQLSNADGV-GGLYVKVMTDEQMELLRQQISVYASICEQLV 60
           MEW NQ Q             ++   G  GG+YVKVMTDEQ E LR+QI++Y +ICE+LV
Sbjct: 2   MEWDNQLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLV 61

Query: 61  EMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWF 120
           EMHK +TAQQDLA                                               
Sbjct: 62  EMHKTLTAQQDLA----------------------------------------------- 121

Query: 121 PGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQ 180
            G R+G LY DP+M S+ GHK+TARQRWTPTPVQLQILE+IFD+G GTPSKQKIKDIT +
Sbjct: 122 -GGRMGGLYADPMM-SSLGHKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEE 153

Query: 181 LTQHGQISEANVYNWFQNRRA 201
           L+QHGQI+E NVYNWFQNRRA
Sbjct: 182 LSQHGQIAEQNVYNWFQNRRA 153

[Close]

BLAST of CsaV3_4G037370.1 vs. TAIR10
Match: AT1G20700.1 (WUSCHEL related homeobox 14)

HSP 1 Score: 140.2 bits (352), Expect = 2.2e-33
Identity = 78/210 (37.14%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 34  KVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFP 93
           +VMT+EQME+LR+QI+VYA IC+QLV +H ++++   L+                     
Sbjct: 29  RVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSS-------------------- 88

Query: 94  VSQCLEKWTPLENEFCSLNSFYAYWFPGMR-LGNLYCDPIMASAAGHKITARQRWTPTPV 153
                                      G+R +   Y DP+ AS++ H+I+ R RWTPT  
Sbjct: 89  ---------------------------GVRPMVGGYFDPMGASSSSHRISTRHRWTPTST 148

Query: 154 QLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPN 213
           QLQILE I+DEG+GTP++++I++I  +L++HGQI+E NVYNWFQNRRARSKRKQ  +   
Sbjct: 149 QLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQPQTTTA 191

Query: 214 NADSEPETEVDSPKEKKTKPEAFQTYEHLV 243
           N  ++        +         ++YEH++
Sbjct: 209 NGQADDVAVTTEERRSCGDSGGLESYEHIL 191

[Close]

BLAST of CsaV3_4G037370.1 vs. TAIR10
Match: AT1G20710.1 (WUSCHEL related homeobox 10)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 34  KVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFP 93
           +VMTDEQME LR+QI++YA +C+QLV +H ++++   L+  SG                 
Sbjct: 13  RVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLS--SG----------------- 72

Query: 94  VSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQ 153
                    P+  E                    Y DP++AS++ H ++ R RWTPT  Q
Sbjct: 73  -------MNPMRGE--------------------YFDPMVASSSAHGMSTRPRWTPTTTQ 131

Query: 154 LQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNR 199
           LQILE I+ EG+GTP+ ++IK+IT++L++HGQI E NVY+WFQNR
Sbjct: 133 LQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNR 131

[Close]

BLAST of CsaV3_4G037370.1 vs. TAIR10
Match: AT5G45980.1 (WUSCHEL related homeobox 8)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-12
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 144 RQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSK 203
           + RW P P Q++ILE IF+ G   P +++I+ I ++L ++GQI +ANV+ WFQNR++R+K
Sbjct: 53  KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAK 112

Query: 204 RK 206
            K
Sbjct: 113 HK 114

[Close]

BLAST of CsaV3_4G037370.1 vs. TAIR10
Match: AT3G18010.1 (WUSCHEL related homeobox 1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-12
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 141 ITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRA 200
           +    RW PTP QL++LE+++ +G  TPS   I+ IT QL ++G+I   NV+ WFQN +A
Sbjct: 71  VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKA 130

Query: 201 RSKRKQANSL 211
           R ++K+   +
Sbjct: 131 RERQKRRRQM 140

[Close]

BLAST of CsaV3_4G037370.1 vs. Swiss-Prot
Match: sp|Q5QMM3|WOX8_ORYSJ (WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX8 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 4.3e-55
Identity = 122/208 (58.65%), Postives = 137/208 (65.87%), Query Frame = 0


Query: 27  GVGGL-YVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHH 86
           G GGL YVKVMTDEQME+LR+QIS+YA+ICEQLVEMH+A+TAQQD               
Sbjct: 20  GEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDS-------------- 79

Query: 87  QNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGHKITARQ 146
                                              GMRLGNLYCDP+M    GHKITARQ
Sbjct: 80  ---------------------------------IAGMRLGNLYCDPLMV-PGGHKITARQ 139

Query: 147 RWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRK 206
           RWTPTP+QLQILE IFD+GNGTPSKQKIKDIT +L+QHGQISE NVYNWFQNRRARSKRK
Sbjct: 140 RWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRK 179

Query: 207 QANSLPNNADSEPETEVDSPKEKKTKPE 234
           QA    NNA+SE     +SP +KK K +
Sbjct: 200 QAALPNNNAESEAXXXEESPTDKKPKSD 179

[Close]

BLAST of CsaV3_4G037370.1 vs. Swiss-Prot
Match: sp|O81788|WOX13_ARATH (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana OX=3702 GN=WOX13 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 103/201 (51.24%), Postives = 121/201 (60.20%), Query Frame = 0


Query: 1   MEWQNQQQXXXXXXXXXXXEQLSNADGV-GGLYVKVMTDEQMELLRQQISVYASICEQLV 60
           MEW NQ Q             ++   G  GG+YVKVMTDEQ E LR+QI++Y +ICE+LV
Sbjct: 2   MEWDNQLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLV 61

Query: 61  EMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWF 120
           EMHK +TAQQDLA                                               
Sbjct: 62  EMHKTLTAQQDLA----------------------------------------------- 121

Query: 121 PGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQ 180
            G R+G LY DP+M S+ GHK+TARQRWTPTPVQLQILE+IFD+G GTPSKQKIKDIT +
Sbjct: 122 -GGRMGGLYADPMM-SSLGHKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEE 153

Query: 181 LTQHGQISEANVYNWFQNRRA 201
           L+QHGQI+E NVYNWFQNRRA
Sbjct: 182 LSQHGQIAEQNVYNWFQNRRA 153

[Close]

BLAST of CsaV3_4G037370.1 vs. Swiss-Prot
Match: sp|Q9LM84|WOX14_ARATH (WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana OX=3702 GN=WOX14 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-32
Identity = 78/210 (37.14%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 34  KVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFP 93
           +VMT+EQME+LR+QI+VYA IC+QLV +H ++++   L+                     
Sbjct: 29  RVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSS-------------------- 88

Query: 94  VSQCLEKWTPLENEFCSLNSFYAYWFPGMR-LGNLYCDPIMASAAGHKITARQRWTPTPV 153
                                      G+R +   Y DP+ AS++ H+I+ R RWTPT  
Sbjct: 89  ---------------------------GVRPMVGGYFDPMGASSSSHRISTRHRWTPTST 148

Query: 154 QLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPN 213
           QLQILE I+DEG+GTP++++I++I  +L++HGQI+E NVYNWFQNRRARSKRKQ  +   
Sbjct: 149 QLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQPQTTTA 191

Query: 214 NADSEPETEVDSPKEKKTKPEAFQTYEHLV 243
           N  ++        +         ++YEH++
Sbjct: 209 NGQADDVAVTTEERRSCGDSGGLESYEHIL 191

[Close]

BLAST of CsaV3_4G037370.1 vs. Swiss-Prot
Match: sp|Q9LM83|WOX10_ARATH (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana OX=3702 GN=WOX10 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-26
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 34  KVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFP 93
           +VMTDEQME LR+QI++YA +C+QLV +H ++++   L+  SG                 
Sbjct: 13  RVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLS--SG----------------- 72

Query: 94  VSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQ 153
                    P+  E                    Y DP++AS++ H ++ R RWTPT  Q
Sbjct: 73  -------MNPMRGE--------------------YFDPMVASSSAHGMSTRPRWTPTTTQ 131

Query: 154 LQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNR 199
           LQILE I+ EG+GTP+ ++IK+IT++L++HGQI E NVY+WFQNR
Sbjct: 133 LQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNR 131

[Close]

BLAST of CsaV3_4G037370.1 vs. Swiss-Prot
Match: sp|A3B6V0|WOX12_ORYSJ (WUSCHEL-related homeobox 12 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX12 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-11
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 144 RQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSK 203
           + RW P P Q++ILE IF+ G   P + +I+ I LQL ++GQ+ +ANV+ WFQNR++R+K
Sbjct: 70  KPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTK 129

Query: 204 RK 206
            K
Sbjct: 130 NK 131

[Close]

BLAST of CsaV3_4G037370.1 vs. TrEMBL
Match: tr|A0A0A0L5X4|A0A0A0L5X4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663700 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 6.0e-118
Identity = 242/290 (83.45%), Postives = 242/290 (83.45%), Query Frame = 0


Query: 1   MEWQNQQQXXXXXXXXXXXEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVE 60
           MEWQNQQQXXXXXXXXXXXEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVE
Sbjct: 1   MEWQNQQQXXXXXXXXXXXEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVE 60

Query: 61  MHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFP 120
           MHKAITAQQDLA                                                
Sbjct: 61  MHKAITAQQDLA------------------------------------------------ 120

Query: 121 GMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQL 180
           GMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQL
Sbjct: 121 GMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQL 180

Query: 181 TQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEH 240
           TQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEH
Sbjct: 181 TQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEH 240

Query: 241 LVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 291
           LVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH
Sbjct: 241 LVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 242

[Close]

BLAST of CsaV3_4G037370.1 vs. TrEMBL
Match: tr|A0A1S3BUJ7|A0A1S3BUJ7_CUCME (WUSCHEL-related homeobox 8-like OS=Cucumis melo OX=3656 GN=LOC103493822 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.1e-111
Identity = 219/271 (80.81%), Postives = 220/271 (81.18%), Query Frame = 0


Query: 20  EQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLA 79
           EQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLA       
Sbjct: 4   EQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLA------- 63

Query: 80  LCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGH 139
                                                    GMRLGNLYCDPIMASAAGH
Sbjct: 64  -----------------------------------------GMRLGNLYCDPIMASAAGH 123

Query: 140 KITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRR 199
           KITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRR
Sbjct: 124 KITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRR 183

Query: 200 ARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEI 259
           ARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE FQTYEHLVP+SGNMYSQRTDLSTEI
Sbjct: 184 ARSKRKQANSLPNNADSEPETEVDSPKEKKTKPETFQTYEHLVPQSGNMYSQRTDLSTEI 226

Query: 260 LSFDAQSNKGEPMFQSFGSGHTSQMTPIQNH 291
           LSFDAQSNKGE MFQSFGSGH SQMTPIQNH
Sbjct: 244 LSFDAQSNKGESMFQSFGSGHISQMTPIQNH 226

[Close]

BLAST of CsaV3_4G037370.1 vs. TrEMBL
Match: tr|D7UDB5|D7UDB5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g01140 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.1e-71
Identity = 164/275 (59.64%), Postives = 189/275 (68.73%), Query Frame = 0


Query: 1   MEWQNQQQXXXXXXXXXXXEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVE 60
           MEW+ Q+  XXXXXXXXXX           LYVKVMTDEQMELLR+QISVYA+ICEQLVE
Sbjct: 2   MEWEAQELQXXXXXXXXXXXXXXXXXXXXXLYVKVMTDEQMELLRRQISVYATICEQLVE 61

Query: 61  MHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFP 120
           MHKAIT QQDLA                                                
Sbjct: 62  MHKAITTQQDLA------------------------------------------------ 121

Query: 121 GMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQL 180
           GMRLGN+YCDP+MAS AGHKI++RQRWTPTPVQLQILE+IFD+GNGTPSKQKIK+IT +L
Sbjct: 122 GMRLGNIYCDPLMAS-AGHKISSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITTEL 181

Query: 181 TQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEH 240
           TQHGQISE NVYNWFQNRRARSKRKQ+  LPNNADSE ET+V+SPKEKKTKP+  Q++E+
Sbjct: 182 TQHGQISETNVYNWFQNRRARSKRKQSVPLPNNADSEVETDVESPKEKKTKPDNIQSHEN 227

Query: 241 LVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQS 276
               + N+Y Q  ++ +E+   D Q NKGEPMF S
Sbjct: 242 SALGTENIYFQSPEMGSEMHCLDTQPNKGEPMFPS 227

[Close]

BLAST of CsaV3_4G037370.1 vs. TrEMBL
Match: tr|A5C8U8|A5C8U8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018997 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.3e-68
Identity = 145/240 (60.42%), Postives = 168/240 (70.00%), Query Frame = 0


Query: 36  MTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVS 95
           MTDEQMELLR+QISVYA+ICEQLVEMHKAIT QQDLA                       
Sbjct: 1   MTDEQMELLRRQISVYATICEQLVEMHKAITTQQDLA----------------------- 60

Query: 96  QCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQ 155
                                    GMRLGN+YCDP+MAS AGHKI++RQRWTPTPVQLQ
Sbjct: 61  -------------------------GMRLGNIYCDPLMAS-AGHKISSRQRWTPTPVQLQ 120

Query: 156 ILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNAD 215
           ILE+IFD+GNGTPSKQKIK+IT +LTQHGQISE NVYNWFQNRRARSKRKQ+  LPNNAD
Sbjct: 121 ILERIFDQGNGTPSKQKIKEITTELTQHGQISETNVYNWFQNRRARSKRKQSVPLPNNAD 180

Query: 216 SEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQS 275
           SE ET+V+SPKEKKTKP+  Q++E+    + N+Y Q  ++ +E+   D Q NKGEPMF S
Sbjct: 181 SEVETDVESPKEKKTKPDNIQSHENSALGTENIYFQSPEMGSEMHCLDTQPNKGEPMFPS 191

[Close]

BLAST of CsaV3_4G037370.1 vs. TrEMBL
Match: tr|A0A2P4HU27|A0A2P4HU27_QUESU (Wuschel-related homeobox 13 OS=Quercus suber OX=58331 GN=CFP56_19172 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 142/245 (57.96%), Postives = 169/245 (68.98%), Query Frame = 0


Query: 31  LYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLL 90
           LYVKVMTDEQ+E LR+QI++YASICEQLVEMHK +TAQQDLAG+                
Sbjct: 58  LYVKVMTDEQLETLRKQIALYASICEQLVEMHKNLTAQQDLAGV---------------- 117

Query: 91  IFPVSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGHKITARQRWTPT 150
                                           RLGNLYCDP+M S AGHKIT+RQRWTPT
Sbjct: 118 --------------------------------RLGNLYCDPLMTS-AGHKITSRQRWTPT 177

Query: 151 PVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSL 210
           PVQLQILE+IFD+GNGTPSKQKIK+IT +L QHGQISE NVYNWFQNRRARSKRKQ NS 
Sbjct: 178 PVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISETNVYNWFQNRRARSKRKQQNSA 237

Query: 211 PNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGE 270
           PNN +SE ETEVDSPK+KKTKPE F + ++  P++ ++  Q  ++S+++   D QS+K E
Sbjct: 238 PNNGESEVETEVDSPKDKKTKPEEFHSQQNSDPRAEDLCFQNPEISSDLHFLDPQSSKAE 253

Query: 271 PMFQS 276
            MF S
Sbjct: 298 AMFPS 253

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145546.1	9.0e-118	83.45	PREDICTED: WUSCHEL-related homeobox 8-like [Cucumis sativus] >KGN55511.1 hypothe...	[more]
XP_008452975.1	1.6e-111	80.81	PREDICTED: WUSCHEL-related homeobox 8-like [Cucumis melo]	[more]
XP_023536295.1	2.0e-101	74.15	WUSCHEL-related homeobox 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936919.1	5.0e-100	73.47	WUSCHEL-related homeobox 8-like isoform X1 [Cucurbita moschata]	[more]
XP_022936920.1	5.0e-100	73.47	WUSCHEL-related homeobox 8-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CsaV3_4G037370.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35550.1	5.9e-47	51.24	WUSCHEL related homeobox 13	[more]
AT1G20700.1	2.2e-33	37.14	WUSCHEL related homeobox 14	[more]
AT1G20710.1	1.4e-27	40.00	WUSCHEL related homeobox 10	[more]
AT5G45980.1	2.8e-12	46.77	WUSCHEL related homeobox 8	[more]
AT3G18010.1	3.6e-12	41.43	WUSCHEL related homeobox 1	[more]

BLAST of CsaV3_4G037370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5QMM3\|WOX8_ORYSJ	4.3e-55	58.65	WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX8 PE=2...	[more]
sp\|O81788\|WOX13_ARATH	1.1e-45	51.24	WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana OX=3702 GN=WOX13 PE=2 SV=1	[more]
sp\|Q9LM84\|WOX14_ARATH	3.9e-32	37.14	WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana OX=3702 GN=WOX14 PE=1 SV=1	[more]
sp\|Q9LM83\|WOX10_ARATH	2.5e-26	40.00	Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana OX=3702 GN=WOX10 PE...	[more]
sp\|A3B6V0\|WOX12_ORYSJ	3.8e-11	48.39	WUSCHEL-related homeobox 12 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX12 PE...	[more]

BLAST of CsaV3_4G037370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5X4\|A0A0A0L5X4_CUCSA	6.0e-118	83.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663700 PE=4 SV=1	[more]
tr\|A0A1S3BUJ7\|A0A1S3BUJ7_CUCME	1.1e-111	80.81	WUSCHEL-related homeobox 8-like OS=Cucumis melo OX=3656 GN=LOC103493822 PE=4 SV=...	[more]
tr\|D7UDB5\|D7UDB5_VITVI	7.1e-71	59.64	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g01140 PE=4 SV=...	[more]
tr\|A5C8U8\|A5C8U8_VITVI	4.3e-68	60.42	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018997 PE=4 SV=1	[more]
tr\|A0A2P4HU27\|A0A2P4HU27_QUESU	1.1e-66	57.96	Wuschel-related homeobox 13 OS=Quercus suber OX=58331 GN=CFP56_19172 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001356	Homeobox_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G037370	CsaV3_4G037370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G037370.1.exon1	CsaV3_4G037370.1.exon1	exon
CsaV3_4G037370.1.exon2	CsaV3_4G037370.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G037370.1.cds1	CsaV3_4G037370.1.cds1	CDS
CsaV3_4G037370.1.cds2	CsaV3_4G037370.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G037370.1	CsaV3_4G037370.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 142..214 e-value: 3.7E-18 score: 66.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..233
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 30..75 coord: 119..259
None	No IPR available	PANTHER	PTHR24326:SF340	WUSCHEL-RELATED HOMEOBOX 10-RELATED	coord: 30..75 coord: 119..259
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 142..209 e-value: 4.6E-12 score: 56.1
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 144..204 e-value: 1.1E-18 score: 66.6
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 140..205 score: 14.495
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 144..206 e-value: 7.12724E-13 score: 61.4904
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 143..206