CsaV3_4G037310.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G037310.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 26179818 .. 26180503 (+)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGCTTTGTGGTCAAGAAGGATCATGTAAGTGTTTTTAGGATCAATTAATTCTAATGCAGAAGCTCACAAGGTGGCCTAGACACTCATAGATATATATGTACTGTTAAGTTTGTCATGCGTCCTTGTTGGCCACAGCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTGTAGGCTTAAATTTGTTTTCTTTTGTTTTGCTAAAAGGATATGTGGAAGTACCACCTATTTCAAATGTTCTTTGGGGTTTCAAAATTTCCTTCTTTGAGATTTATCGTGATACTCCAGCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTGTTTTTTGGTGGTTCTTGAATAATTTACAGGTTTGAATTTTGTCTGAAATGTCTTTTTTCTTTATGTGCAGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTGTAAGCTACCTTCGTTTCTGTTTTATTGACTCCGAATTGTTCTCTCTGCTTTCTTTCACGATTGTTGATTTTTTTCGTTAGTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

mRNA sequence

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Coding sequence (CDS)

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Protein sequence

MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWDGILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Homology
[Close]
BLAST of CsaV3_4G037310.1 vs. NCBI nr
Match: KGN55505.1 (hypothetical protein Csa_4G663640 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 4.7e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

[Close]
BLAST of CsaV3_4G037310.1 vs. TrEMBL
Match: tr|A0A0A0L0R3|A0A0A0L0R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663640 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

The following BLAST results are available for this feature:
BLAST of CsaV3_4G037310.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55505.14.7e-52100.00hypothetical protein Csa_4G663640 [Cucumis sativus][more]
BLAST of CsaV3_4G037310.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037310.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037310.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0R3|A0A0A0L0R3_CUCSA3.1e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G037310CsaV3_4G037310gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G037310.1CsaV3_4G037310.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G037310.1.exon1CsaV3_4G037310.1.exon1exon
CsaV3_4G037310.1.exon2CsaV3_4G037310.1.exon2exon
CsaV3_4G037310.1.exon3CsaV3_4G037310.1.exon3exon
CsaV3_4G037310.1.exon4CsaV3_4G037310.1.exon4exon
CsaV3_4G037310.1.exon5CsaV3_4G037310.1.exon5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G037310.1.cds1CsaV3_4G037310.1.cds1CDS
CsaV3_4G037310.1.cds2CsaV3_4G037310.1.cds2CDS
CsaV3_4G037310.1.cds3CsaV3_4G037310.1.cds3CDS
CsaV3_4G037310.1.cds4CsaV3_4G037310.1.cds4CDS
CsaV3_4G037310.1.cds5CsaV3_4G037310.1.cds5CDS