CsaV3_4G035690.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTTTAACAGTAATTTTAAAAAAGAAAATTATAAAAAATAAAATATTTTAAATATTTGGTCTTTTGAGCAAGGAAATGGGGCTTTTTTCTTTTTTGGTTTTGTTCTGAAAGTTTCTTTGGTTTTAGGCTTTTAGCAGGAGGCAGCAAGAAAGTTTGTTGAAAAACATTCAAGAAGGCCAGTGGGTACAAGGTTTTCTTTTTGTTGCTAAATTCCCCCACCTTCATAAATTTTCATTTTTTGTATTTAATTTTACTGTCTCTTCACATGCATATATACCAAACCTCCCCTTTCATTTTTTTATAAAAAAATTATGAAGGAGATCTTAAATTAAATCTATGAAACTTGATATTCATGGATAATTAATATTCCTCTCCCAAGTTTTTGGTTTTTATGTTTTATTCTGAATTAGGGTTTTTTTTTTCAGATCTATCTCTCTCAAGATAGAGTTCTTTGATTTCACTATACGTTTCTCATTTATAAAGGGGTTTTGCAGTTGGAATTTAATGAAGTGAAAGAGGATATTGATGATGATGATGATGAAAAGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCTTCTGGAGAAACAATGACAAGAACTGAAATTTCCACTACTACCCCTATGTATTCTCATCAATCATCTTCTTCCATAAATCAACCAACACCACCGCTTCCACCGCTACCGCCGCCACCACCGTCAAAAAAGAAGCGAAATCTTCCAGGCAATCCAGGTATTGTTTTTGTTGAGAATACATGAATAGATGTTATGATTTATATCTTGTGTTTTCATACTTCTGTAATATTAAAAAAGAAGAAAGTTTGAATTTTGAATCAGACCCAGAAGCGGAAGTGATAGCCTTATCGCCAAAATCACTTCTGGCGACCAATAGATTCATATGCGAGATCTGTAAGAAGGGGTTTCAAAGAGATCAGAATTTGCAACTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAACTGACATGTGTACATCATCATCCATCGAGGGCTCTGGGCGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAAAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCCAGGTAAATTACTTAATGTGAATATGCAATTCAATATAAGTTTCAAACTCAAATCAACGAGAACTATTATTTAATCATTTCCAAATTTAAATTCCTATGATTTTAAAAATGTTAAAGTCTAGTCCATAGATGCGTGATTTGGTAAAAGACTAATTATTATAAATGGTTTTATAAAGATTATACATGTATGAATAAATTTTATCAAACATATACCATAAAAATCAATTGAGTTTTTTCTAAACCATAGAAACCAAATAAAAGGACAGTTTTTAAAAAAAAAACAAAAACAAAAATGAACCAAATTTTGTAATTAAGCATAATAAATGATTATTTATGGGTTATTGTTTAAAATGTCTCAACTGTTGAAGTATGGTAGAAGAATATAAAAACATTATTATTGTTGTTACATTTTGTGAAAAGTGGGAGAGAGAGAGAAGTAGGGGATAATAATGTGGGAGTATTTTTGAGTATGTAGTACAGAGAAAATTTATGGGGCAGTGATAAAAATTTGTTTGTTTATGTGTTGTATTGTTTTGAACTTTGGCAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAGTAACCCAACTCCTAAAATTACATCCCACCTTTTCCCATCTATTAATTTCCCTCTTAAATTTGAACACCAAGACCCTTTTTTCCCTCCTCCTCCTCCTCCTCCTCCACCACCTTCTCATCAAAACCCTAATAACCCTACTTCTTCAATCGGGTTCGGATTACCCGGTCTCGGTCCGGGTCATCTTTTTGCGTCTTCTTGCCCTGCATGGGAAGTTAATAACAACAACAATAATTCATGTTCAGCTGAAATTGCTCCATTTTTTCATCACATGGTGGGTTTTGAAGAGGCGGCCTCATTTGAAGAAGCACTTAATGGGATATTGATGAGTAACAGTAATAGAGGCAATAAAAATGGTGGCAAAGGTGGCGGTGCTGCCGGAGAAATAACGAGGGATTTTCTGGGGGGGCTGAGACCTGTGGATTCTTCTATGTTTCAGAATCATGATCATCAGATGATAAATAACGACATGTCGAATTTGGATTCTCCTTCGACGTTTGGAGTGCACGGCCAGAACCAGAATACGACATGTTGGCGTCAAAATTAGTTTTTTGTTTTTCTTTTTTGAATCCAAAATGAGTTTTTGGATCAAACGGAGGAATGAGCGGTGAAAAAAATGTATGTATTTATTTATTATTTTTTTTCTTGAGGAATTTTCATGTAACAATTTTCGCTTTGCTCTTAAATTCTCTCTCTCTCTCTCTGGATTACCTTTTTTGTTCACAATAAATTTCAAAAGGGTCATTAATTATGACAGTCTTAAATGATAAATTTATGGGTAATAATTAATAACTTTTAAC ATGATGATGATGATGAAAAGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCTTCTGGAGAAACAATGACAAGAACTGAAATTTCCACTACTACCCCTATGTATTCTCATCAATCATCTTCTTCCATAAATCAACCAACACCACCGCTTCCACCGCTACCGCCGCCACCACCGTCAAAAAAGAAGCGAAATCTTCCAGGCAATCCAGACCCAGAAGCGGAAGTGATAGCCTTATCGCCAAAATCACTTCTGGCGACCAATAGATTCATATGCGAGATCTGTAAGAAGGGGTTTCAAAGAGATCAGAATTTGCAACTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAACTGACATGTGTACATCATCATCCATCGAGGGCTCTGGGCGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAAAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCCAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAGTAACCCAACTCCTAAAATTACATCCCACCTTTTCCCATCTATTAATTTCCCTCTTAAATTTGAACACCAAGACCCTTTTTTCCCTCCTCCTCCTCCTCCTCCTCCACCACCTTCTCATCAAAACCCTAATAACCCTACTTCTTCAATCGGGTTCGGATTACCCGGTCTCGGTCCGGGTCATCTTTTTGCGTCTTCTTGCCCTGCATGGGAAGTTAATAACAACAACAATAATTCATGTTCAGCTGAAATTGCTCCATTTTTTCATCACATGGTGGGTTTTGAAGAGGCGGCCTCATTTGAAGAAGCACTTAATGGGATATTGATGAGTAACAGTAATAGAGGCAATAAAAATGGTGGCAAAGGTGGCGGTGCTGCCGGAGAAATAACGAGGGATTTTCTGGGGGGGCTGAGACCTGTGGATTCTTCTATGTTTCAGAATCATGATCATCAGATGATAAATAACGACATGTCGAATTTGGATTCTCCTTCGACGTTTGGAGTGCACGGCCAGAACCAGAATACGACATGTTGGCGTCAAAATTAG ATGATGATGATGATGAAAAGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCTTCTGGAGAAACAATGACAAGAACTGAAATTTCCACTACTACCCCTATGTATTCTCATCAATCATCTTCTTCCATAAATCAACCAACACCACCGCTTCCACCGCTACCGCCGCCACCACCGTCAAAAAAGAAGCGAAATCTTCCAGGCAATCCAGACCCAGAAGCGGAAGTGATAGCCTTATCGCCAAAATCACTTCTGGCGACCAATAGATTCATATGCGAGATCTGTAAGAAGGGGTTTCAAAGAGATCAGAATTTGCAACTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAACTGACATGTGTACATCATCATCCATCGAGGGCTCTGGGCGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAAAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCCAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAGTAACCCAACTCCTAAAATTACATCCCACCTTTTCCCATCTATTAATTTCCCTCTTAAATTTGAACACCAAGACCCTTTTTTCCCTCCTCCTCCTCCTCCTCCTCCACCACCTTCTCATCAAAACCCTAATAACCCTACTTCTTCAATCGGGTTCGGATTACCCGGTCTCGGTCCGGGTCATCTTTTTGCGTCTTCTTGCCCTGCATGGGAAGTTAATAACAACAACAATAATTCATGTTCAGCTGAAATTGCTCCATTTTTTCATCACATGGTGGGTTTTGAAGAGGCGGCCTCATTTGAAGAAGCACTTAATGGGATATTGATGAGTAACAGTAATAGAGGCAATAAAAATGGTGGCAAAGGTGGCGGTGCTGCCGGAGAAATAACGAGGGATTTTCTGGGGGGGCTGAGACCTGTGGATTCTTCTATGTTTCAGAATCATGATCATCAGATGATAAATAACGACATGTCGAATTTGGATTCTCCTTCGACGTTTGGAGTGCACGGCCAGAACCAGAATACGACATGTTGGCGTCAAAATTAG MMMMMKSNLMVDENLSVLTCASGETMTRTEISTTTPMYSHQSSSSINQPTPPLPPLPPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNSNPTPKITSHLFPSINFPLKFEHQDPFFPPPPPPPPPPSHQNPNNPTSSIGFGLPGLGPGHLFASSCPAWEVNNNNNNSCSAEIAPFFHHMVGFEEAASFEEALNGILMSNSNRGNKNGGKGGGAAGEITRDFLGGLRPVDSSMFQNHDHQMINNDMSNLDSPSTFGVHGQNQNTTCWRQN
BLAST of CsaV3_4G035690.1 vs. NCBI nr
Match: XP_011654179.1 (PREDICTED: zinc finger protein MAGPIE-like [Cucumis sativus] >XP_004141426.2 PREDICTED: zinc finger protein MAGPIE-like [Cucumis sativus] >KGN55339.1 hypothetical protein Csa_4G646130 [Cucumis sativus]) HSP 1 Score: 680.6 bits (1755), Expect = 3.2e-192 Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. NCBI nr
Match: XP_008452730.1 (PREDICTED: protein indeterminate-domain 7-like [Cucumis melo] >XP_008452731.1 PREDICTED: protein indeterminate-domain 7-like [Cucumis melo] >XP_016901351.1 PREDICTED: protein indeterminate-domain 7-like [Cucumis melo]) HSP 1 Score: 458.0 bits (1177), Expect = 3.4e-125 Identity = 247/255 (96.86%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. NCBI nr
Match: XP_022133502.1 (protein indeterminate-domain 7-like [Momordica charantia] >XP_022133578.1 protein indeterminate-domain 7-like [Momordica charantia] >XP_022133649.1 protein indeterminate-domain 7-like [Momordica charantia] >XP_022133725.1 protein indeterminate-domain 7-like [Momordica charantia] >XP_022133810.1 protein indeterminate-domain 7-like [Momordica charantia] >XP_022133893.1 protein indeterminate-domain 7-like [Momordica charantia] >XP_022133973.1 protein indeterminate-domain 7-like [Momordica charantia] >XP_022134060.1 protein indeterminate-domain 7-like [Momordica charantia]) HSP 1 Score: 395.2 bits (1014), Expect = 2.7e-106 Identity = 265/447 (59.28%), Postives = 288/447 (64.43%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. NCBI nr
Match: XP_022941083.1 (zinc finger protein MAGPIE-like [Cucurbita moschata] >XP_022941084.1 zinc finger protein MAGPIE-like [Cucurbita moschata] >XP_022941085.1 zinc finger protein MAGPIE-like [Cucurbita moschata]) HSP 1 Score: 389.4 bits (999), Expect = 1.5e-104 Identity = 231/356 (64.89%), Postives = 250/356 (70.22%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. NCBI nr
Match: XP_022982381.1 (zinc finger protein MAGPIE-like [Cucurbita maxima] >XP_022982382.1 zinc finger protein MAGPIE-like [Cucurbita maxima] >XP_022982383.1 zinc finger protein MAGPIE-like [Cucurbita maxima]) HSP 1 Score: 388.3 bits (996), Expect = 3.3e-104 Identity = 228/357 (63.87%), Postives = 242/357 (67.79%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TAIR10
Match: AT1G03840.1 (C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 318.5 bits (815), Expect = 5.8e-87 Identity = 142/162 (87.65%), Postives = 155/162 (95.68%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TAIR10
Match: AT5G44160.1 (C2H2-like zinc finger protein) HSP 1 Score: 313.2 bits (801), Expect = 2.4e-85 Identity = 140/162 (86.42%), Postives = 152/162 (93.83%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TAIR10
Match: AT3G50700.1 (indeterminate(ID)-domain 2) HSP 1 Score: 312.8 bits (800), Expect = 3.2e-85 Identity = 139/167 (83.23%), Postives = 157/167 (94.01%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TAIR10
Match: AT4G02670.1 (indeterminate(ID)-domain 12) HSP 1 Score: 309.7 bits (792), Expect = 2.7e-84 Identity = 143/180 (79.44%), Postives = 155/180 (86.11%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TAIR10
Match: AT5G66730.1 (C2H2-like zinc finger protein) HSP 1 Score: 308.9 bits (790), Expect = 4.6e-84 Identity = 139/157 (88.54%), Postives = 149/157 (94.90%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. Swiss-Prot
Match: sp|Q9ZWA6|IDD3_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana OX=3702 GN=MGP PE=1 SV=1) HSP 1 Score: 318.5 bits (815), Expect = 1.1e-85 Identity = 142/162 (87.65%), Postives = 155/162 (95.68%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. Swiss-Prot
Match: sp|Q9FFH3|IDD8_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana OX=3702 GN=NUC PE=2 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 4.4e-84 Identity = 140/162 (86.42%), Postives = 152/162 (93.83%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. Swiss-Prot
Match: sp|Q9SCQ6|IDD2_ARATH (Protein indeterminate-domain 2 OS=Arabidopsis thaliana OX=3702 GN=IDD2 PE=1 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 5.8e-84 Identity = 139/167 (83.23%), Postives = 157/167 (94.01%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. Swiss-Prot
Match: sp|O22759|IDD12_ARATH (Protein indeterminate-domain 12 OS=Arabidopsis thaliana OX=3702 GN=IDD12 PE=2 SV=2) HSP 1 Score: 309.7 bits (792), Expect = 4.9e-83 Identity = 143/180 (79.44%), Postives = 155/180 (86.11%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. Swiss-Prot
Match: sp|Q9LVQ7|IDD1_ARATH (Protein indeterminate-domain 1 OS=Arabidopsis thaliana OX=3702 GN=IDD1 PE=1 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 8.3e-83 Identity = 139/157 (88.54%), Postives = 149/157 (94.90%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TrEMBL
Match: tr|A0A0A0L2R7|A0A0A0L2R7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646130 PE=4 SV=1) HSP 1 Score: 680.6 bits (1755), Expect = 2.1e-192 Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TrEMBL
Match: tr|A0A1S3BVB6|A0A1S3BVB6_CUCME (protein indeterminate-domain 7-like OS=Cucumis melo OX=3656 GN=LOC103493664 PE=4 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 2.2e-125 Identity = 247/255 (96.86%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TrEMBL
Match: tr|A0A1S3XT33|A0A1S3XT33_TOBAC (protein indeterminate-domain 12-like OS=Nicotiana tabacum OX=4097 GN=LOC107768423 PE=4 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 1.1e-87 Identity = 161/193 (83.42%), Postives = 169/193 (87.56%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TrEMBL
Match: tr|A0A067KGF2|A0A067KGF2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07659 PE=4 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 2.4e-87 Identity = 189/236 (80.08%), Postives = 200/236 (84.75%), Query Frame = 0
BLAST of CsaV3_4G035690.1 vs. TrEMBL
Match: tr|A0A1S3YNL0|A0A1S3YNL0_TOBAC (protein indeterminate-domain 7-like OS=Nicotiana tabacum OX=4097 GN=LOC107777946 PE=4 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 2.4e-87 Identity = 161/190 (84.74%), Postives = 168/190 (88.42%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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