CsaV3_4G035530.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GAGCTCAGTGAATTTATAACCGGAAAACCATCCTAGGTTCGGGTTGGTTTGATGATAATTTTGGCCTCAAACCAAATATGATCGCAATTAGCCCACATACCAGAACTGATATACATCATTCAGTTTTCCCATAATTGATGCACTGCACAAATTCACGTTTTAATGTTCGGTACCTAGTACCGAGTCTGAGGAGTTTACTATGACGAGTAGTTGAATTAGTCTGCTGTAGGATGGGTTAATTGTTCAGACTCCACTAAGACGACAATACCAGATTAGTAGTAGATTAATCAGTTTAGGTTTATTAGTTACAGTCTTCCAGTTCATGTTGCATTGGGACGCATGGCATAAGTCTAGTGACGTTATGTTCCAGTTCTATTTTCTTAGAAACTATGTTCTGTACTCTTTGAGTTTTTTCCCTCTAAATGTATAATTTTGTTCTCAATTTAGAATGAGTTTATTGGTTGTTTTTAGCTGGGATCCCAAGATAAAGTTTATTTAATTTTTCAATTATACTTTGAGGTTTTCAATTTCAAGCGTCATGCATGCACTGATGCACATATTGTAGATCAGGTCTTAGACATATTGTAGATCAGATCTTAGAAAGTTGCGTCATGACCGGTGCTCTAGGATTAGTTCTAAGATTTTGAACCCTTCGTGCAGCTGATCTTATTGTATAAATGCCAAAGAAGAAATCTTCTAAAACGCCTAAAAAGATCCCAGAGAATGCCTCTACGAAACAGGAGAAGTCCAATGCCGTGGTAAAAGGTGAAAATCCCAATTCCGTAGTGAAAGAGGAAAAGCCCCCATCAGTAAAGAAACACAGTGAGATCGATGAAATTTTTGCTGGGAAGAAGAGGAAAAAGCCCGAAGTTGGGAAGACCGAGGAGCCAAAACTAGATGCACAAGACAGACCGAAAAAGACAAAGAACAAGAAAAAGGATGAAGCTCAATCCAGAAATGGATTTGCAGACCCACAATCGCGGCGAAGAAAGAAAACTGGGGATGGGCTTACAATTTACACCGAAGAGGAACTGGGTTTTGGCAATGCAGATGCTGGAGGCACCCCGCTCTGCCCATTTGACTGTAATTGTTGCTTCTAAACATCCTCAATGTTCGATTTTGATCAAGAGGTCGTTTCTCTATCTAGTAAAACATCTGTTACATCTTCCATTTCTGTGAATCAATTTTTCCAATTTTATTGAGCAGTTTATTTGTTTCCATAACGGCTGTGCATTGGAGGCGATCATCATTTTAGATTATATAATTATGAAGCACAGAAAAGTATAAAATTTTGAAGGTCTTGATGGAATTGTTGTTGACACGACAGTACAGACCATTCTGTTATTTGGTTTCTTAAGACCTGTTCAACAACATAAAGTCGATTGCACCTT ATGCCAAAGAAGAAATCTTCTAAAACGCCTAAAAAGATCCCAGAGAATGCCTCTACGAAACAGGAGAAGTCCAATGCCGTGGTAAAAGGTGAAAATCCCAATTCCGTAGTGAAAGAGGAAAAGCCCCCATCAGTAAAGAAACACAGTGAGATCGATGAAATTTTTGCTGGGAAGAAGAGGAAAAAGCCCGAAGTTGGGAAGACCGAGGAGCCAAAACTAGATGCACAAGACAGACCGAAAAAGACAAAGAACAAGAAAAAGGATGAAGCTCAATCCAGAAATGGATTTGCAGACCCACAATCGCGGCGAAGAAAGAAAACTGGGGATGGGCTTACAATTTACACCGAAGAGGAACTGGGTTTTGGCAATGCAGATGCTGGAGGCACCCCGCTCTGCCCATTTGACTGTAATTGTTGCTTCTAA ATGCCAAAGAAGAAATCTTCTAAAACGCCTAAAAAGATCCCAGAGAATGCCTCTACGAAACAGGAGAAGTCCAATGCCGTGGTAAAAGGTGAAAATCCCAATTCCGTAGTGAAAGAGGAAAAGCCCCCATCAGTAAAGAAACACAGTGAGATCGATGAAATTTTTGCTGGGAAGAAGAGGAAAAAGCCCGAAGTTGGGAAGACCGAGGAGCCAAAACTAGATGCACAAGACAGACCGAAAAAGACAAAGAACAAGAAAAAGGATGAAGCTCAATCCAGAAATGGATTTGCAGACCCACAATCGCGGCGAAGAAAGAAAACTGGGGATGGGCTTACAATTTACACCGAAGAGGAACTGGGTTTTGGCAATGCAGATGCTGGAGGCACCCCGCTCTGCCCATTTGACTGTAATTGTTGCTTCTAA MPKKKSSKTPKKIPENASTKQEKSNAVVKGENPNSVVKEEKPPSVKKHSEIDEIFAGKKRKKPEVGKTEEPKLDAQDRPKKTKNKKKDEAQSRNGFADPQSRRRKKTGDGLTIYTEEELGFGNADAGGTPLCPFDCNCCF
BLAST of CsaV3_4G035530.1 vs. NCBI nr
Match: XP_022940022.1 (uncharacterized protein C6G9.01c [Cucurbita moschata]) HSP 1 Score: 149.4 bits (376), Expect = 8.9e-33 Identity = 112/140 (80.00%), Postives = 121/140 (86.43%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. NCBI nr
Match: XP_022982421.1 (uncharacterized protein C6G9.01c [Cucurbita maxima]) HSP 1 Score: 146.7 bits (369), Expect = 5.8e-32 Identity = 110/140 (78.57%), Postives = 120/140 (85.71%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. NCBI nr
Match: XP_023524420.1 (uncharacterized protein C6G9.01c [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30 Identity = 109/140 (77.86%), Postives = 118/140 (84.29%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. NCBI nr
Match: XP_022142164.1 (uncharacterized protein C6G9.01c [Momordica charantia]) HSP 1 Score: 110.9 bits (276), Expect = 3.5e-21 Identity = 95/140 (67.86%), Postives = 103/140 (73.57%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. NCBI nr
Match: GAV61388.1 (DUF1764 domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 110.2 bits (274), Expect = 6.0e-21 Identity = 65/140 (46.43%), Postives = 74/140 (52.86%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. TAIR10
Match: AT5G11760.1 (unknown protein) HSP 1 Score: 62.4 bits (150), Expect = 2.6e-10 Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. Swiss-Prot
Match: sp|Q92346|YDH1_SCHPO (Uncharacterized protein C6G9.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC6G9.01c PE=4 SV=2) HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06 Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. TrEMBL
Match: tr|A0A1Q3B091|A0A1Q3B091_CEPFO (DUF1764 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04915 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 4.0e-21 Identity = 65/140 (46.43%), Postives = 74/140 (52.86%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. TrEMBL
Match: tr|A0A2R6PHE9|A0A2R6PHE9_ACTCH (Uncharacterized protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28647 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19 Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. TrEMBL
Match: tr|A0A2H5PZB7|A0A2H5PZB7_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_181380 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18 Identity = 66/143 (46.15%), Postives = 78/143 (54.55%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. TrEMBL
Match: tr|A0A067GMW2|A0A067GMW2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033117mg PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18 Identity = 66/143 (46.15%), Postives = 78/143 (54.55%), Query Frame = 0
BLAST of CsaV3_4G035530.1 vs. TrEMBL
Match: tr|A0A072UNS8|A0A072UNS8_MEDTR (DUF1764 domain protein OS=Medicago truncatula OX=3880 GN=25493126 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17 Identity = 65/142 (45.77%), Postives = 75/142 (52.82%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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