CsaV3_4G031390.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031390.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 21837736 .. 21838588 (+)
Sequence length483
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATGTTGTCCAAAAAGAAAAGTGTCTCTCAAGATGCTACTTTCTCTATTCCATCCAAAGATAAAGACTATGAAGAGATAACTTATTACGATTTTGATGATTCAACTACTGGTACTTTCAAGGATGATTCTGAAAATATTAACAAAGAAAATGTGAATGACCAAGATGAGAATGTCTACAGTGAGTTAGAAAAATATTGGGGCTTTGTTGAAGAACCTAATGAGGAAGGTCACGTGTCCAAGGTTCTGCCACTCGAGCCTCTGCTAAAAATTCCAAGAATAAGCCTTCCACTGTGTCGGTTCCATCCATTCCATTGGATGAAGTTTCCTTCCATTATGAAAAAGTACAATAACCCTTTGGAAGTATGTTTAGTGAAAAATCTTTCCAGAAAAGGAGTTGTCTGAGAAACCTCATGTCTGCTTGGAGGTCATGGAGCTGCATGTGAAAAATCGATATGATGAGGTCTGTGACTAACTTTGGTTCCTGTTGCCCTAAATTTGTAAGGGAGTTTGTTGTTTAATTTATCTCCATTTTTTTATGATGCCAACTCTTCTAATTATCGAAAAGTCCATGTTCGTGGTCACAATAGCTTTGTTTTCACAATGTCATCATCAACAAGTTTCTGGATATAAATGTGCCTCAGGGAATGCATAGACTAATAACCTCTTGAAGGACCTTGTGTCTGAATTGGCAGATGGTCTGCGAGAAAATTTGCTTAAATCTGGGTTACTTGCAACCATTGATCTAAGTGCCAAATATGATATCTTGTTTCACATTAGTTGTGGCAAACTGATGGCCTTCATCTCACCATACAAGGGTGTCACTTTATATGGCTACTTTGATTCTTAA

mRNA sequence

ATGGACATGTTGTCCAAAAAGAAAAGTGTCTCTCAAGATGCTACTTTCTCTATTCCATCCAAAGATAAAGACTATGAAGAGATAACTTATTACGATTTTGATGATTCAACTACTGGTACTTTCAAGGATGATTCTGAAAATATTAACAAAGAAAATGTGAATGACCAAGATGAGAATGTCTACAGTGAGTTAGAAAAATATTGGGGCTTTGTTGAAGAACCTAATGAGGAAGAAAAGGAGTTGTCTGAGAAACCTCATGTCTGCTTGGAGGTCATGGAGCTGCATGTGAAAAATCGATATGATGAGGACCTTGTGTCTGAATTGGCAGATGGTCTGCGAGAAAATTTGCTTAAATCTGGGTTACTTGCAACCATTGATCTAAGTGCCAAATATGATATCTTGTTTCACATTAGTTGTGGCAAACTGATGGCCTTCATCTCACCATACAAGGGTGTCACTTTATATGGCTACTTTGATTCTTAA

Coding sequence (CDS)

ATGGACATGTTGTCCAAAAAGAAAAGTGTCTCTCAAGATGCTACTTTCTCTATTCCATCCAAAGATAAAGACTATGAAGAGATAACTTATTACGATTTTGATGATTCAACTACTGGTACTTTCAAGGATGATTCTGAAAATATTAACAAAGAAAATGTGAATGACCAAGATGAGAATGTCTACAGTGAGTTAGAAAAATATTGGGGCTTTGTTGAAGAACCTAATGAGGAAGAAAAGGAGTTGTCTGAGAAACCTCATGTCTGCTTGGAGGTCATGGAGCTGCATGTGAAAAATCGATATGATGAGGACCTTGTGTCTGAATTGGCAGATGGTCTGCGAGAAAATTTGCTTAAATCTGGGTTACTTGCAACCATTGATCTAAGTGCCAAATATGATATCTTGTTTCACATTAGTTGTGGCAAACTGATGGCCTTCATCTCACCATACAAGGGTGTCACTTTATATGGCTACTTTGATTCTTAA

Protein sequence

MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENVYSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSGLLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS
Homology
[Close]
BLAST of CsaV3_4G031390.1 vs. NCBI nr
Match: KGN54877.1 (hypothetical protein Csa_4G571730 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 1.1e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60
           MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV
Sbjct: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60

Query: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120
           YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG
Sbjct: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120

Query: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 161
           LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS
Sbjct: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 160

[Close]
BLAST of CsaV3_4G031390.1 vs. TrEMBL
Match: tr|A0A0A0L2P5|A0A0A0L2P5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571730 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 7.1e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60
           MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV
Sbjct: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60

Query: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120
           YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG
Sbjct: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120

Query: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 161
           LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS
Sbjct: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 160

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54877.11.1e-82100.00hypothetical protein Csa_4G571730 [Cucumis sativus][more]
BLAST of CsaV3_4G031390.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031390.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G031390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2P5|A0A0A0L2P5_CUCSA7.1e-83100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571730 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G031390CsaV3_4G031390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G031390.1CsaV3_4G031390.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G031390.1.exon1CsaV3_4G031390.1.exon1exon
CsaV3_4G031390.1.exon2CsaV3_4G031390.1.exon2exon
CsaV3_4G031390.1.exon3CsaV3_4G031390.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G031390.1.cds1CsaV3_4G031390.1.cds1CDS
CsaV3_4G031390.1.cds2CsaV3_4G031390.1.cds2CDS
CsaV3_4G031390.1.cds3CsaV3_4G031390.1.cds3CDS