CsaV3_4G030590.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G030590.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGolgi apparatus membrane protein TVP23
Locationchr4 : 20544500 .. 20549041 (+)
Sequence length552
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAATAAAAAATTTATGTTCGATGTTCTAGGTTGACCTAAAATTTACGGAAATAAAAGTTTTTGATTTTGTTACCCGCACCATAAATATTATTTATGGTGTTTTATTATATCTAAAAAGAAAAGTCATAAATAGTTTGATGTGGAAAAATGAGTCGAAACCAAATCAAATAAAATGAAGGTGTGAAATATTTACTTGATTCTGGTGGTGCTACAATTTCCCTCGGCGAGCGCATAGCGACGGAGGGGGTGGCGGTTTCGCTTCATTTCTTCAACAGATAACCCAAATTCTACACTTACCCACAATTTACTTCGTGCAAATTCTCTCCAATTTCCAGATCATGGATCCCAACCAGGTAAATTTCACTACTTTCAAACTTCTTTTTGACCTTCCCCATCTTTTTATTTCTACAATTATCATCTTTTCGTGCTTAGACATGCTGTTAATCTTCTGCGTTAGGCATTTTCGTCTCCTTATCCTTGTTGATTGCTAGATCCAATCGGAAACTAGGGCCGACGGTTGGGATGCGGTGTAGAAGTAAACGTTCATATCTGTTAACGAACAAAATCCGTGATTAATGTAAGATCTGAGCTGATGATGGGCAGATTATGGTGGATTTTCAGATTAGCTACAGTTGAATTTCAATTGGTTTAGATTTTAGAACCTTCGCACATTTCGTTCTTGAAGCATAGGATTGAGCGCATTATTGTGTATTAGTATGTGATGCATTTATGAAATTGGGGTTCCATTGGGATTCTAGATTTGGAAGGTTTTTTTTTAGAGAGTTATTGCTATTGTTTGACTCATACGATCCCTCTTTTGCAGCCACCTGTGGAAAATTATGCTAACCCGAAGACTTGTTTCTTTCATGTTCTTTTTAAGGTAAGATTATGTTACTATGATATTAATAGACTTCATTCTTGAATGACCTCTGGGCTTTCTGGGATTTATGTGATTGTGCTTCTTCTTTTTCAGGCTGGAGCATTGGCCTTTTACATTCTTTCCTCTCTCTTTTTCAATAGTTTTGTTATCATTTTTGTGGTGACTGTTTTTCTTGCTGCTCTTGACTTTTGGGTCGTGAAGAATGTGAGTGGGCGTATATTGGTTGGTTTAAGGTGGTGGAATGAAATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGGTGAGTGCTTAGTTCTTTCATTTTCAGAATTTTCTTCTCAATTATGTTATCAGGAAAATATTTAAATGCTTATTTCTTGCTTCTAATGCTCTTGGATCCTTGGTTGTTTTCTAGTCATTGTCTCGGATGAATAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGTAAGAAAGTATTGTGATCCCAAATATCGTGATAATTTGATTATGTGTTTCCAATGGGTTATCAAACAAGTGATGGTTTTTGAAAAATATATTTTATCATACAGATACGAATGAATGTCAGCAGGTATGATTCCTGAAGGAGAATAATATTTGATATACATGTCTAAAGCTTAATAATCTGGAGGCAGGCCAGTCTCTTTGTTTTTATGTTTTCTTTTGTTGGATGTTGGGGGGGAACTTGAAGAAATTACTTATCCCTGATTATTTGAGTGCTTTGAAGAACCAATTTTTTGTTTTTGGTTTTCCTTCAAAGGATGTTGTGGATTTTAGTTATTATTTTCTTAAGCAATGCTATTGCTTGCTAAACATGGACCATGGCCTTAGAAAGTAGGGAAAAAAACAAAACAAAGTAAAATAGTTGGATTCAACAAGATTTAATATTTTGAGCCGTTTCTTTCTTGATAATAACTTCTAAAAAAAAAAATTTATTGAGAAAATAATTTTGTGTCTTGGAATTTACTTTTATTCTAAGAAGCAAACATAGTGGTTAGACACTTACCTTAGAACTGATAGATTTGAATAAATGTTGTAGGGTCATTACTCATTACCTTGAAATTCTCATAAATATATATGCTTTATGCCATGCAAGGGATGTTTGCATTTCCATATTAAAAGCTAATATACGGGAAAACAAGAGAGAACAAGAGAAAAAAGCAAAAAAGCAAAGAGAAGAAAGAAGGGGAAAAAGAAAAAAAATCAAGGATGGGGGATTGTGCTTTGGTCATTATGGTTTATTGCTAATCTAAATGGGTTTTCCTTTGGTCACTATGGTTAGATTGGAACTCCTGTATCTTCACAGGAAAAGATCGGTGTTCTGATTCCATTATTTTTTTGGCTCATCGATGGTTTATAAATTGTCCTTTTTGTAGTTTCATCATTATCTTATTACCCATTGGAAAAGTTTTTTCTGTAGAACCCCTGGATAGTTACTCTACTCAAGAGTGGATCTACTTTATTTTGCAATTTCATTTAAGCATTTCTTATATATATATACAGAAAATTATGATCTTCATTATTCATATGTGCTCATGCTTCTGAACTTATGAAAAACAGGCAGTTGCATGGACTGTGCTGGGCATATTCTCGTTGATAAAGTTTCAAGCTGATTATCTCCTTGTCGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATCATTGGCTTTACCAAATGTCGTAAAGGTAAGCAATAAGTTCCTTGAGCTATCAAAATTCTACAGGGTTTGTACGGCACTGAAATGCCTGATTTGTTGTTGCTTTCTCCCTGTTTGCAATAGCTTTGGAATTTTTTTCCATGAAAAACTTCTGAATTCTTTTGAAGGTTTTAGAAATATGTTTTAAACCTCAAGGGATAGACCATTGTGAAACCCTGCCTGCTGTTTGTTAAGTTTGGTTTCTATTTTTAAATCATTGTTAGAAGAGATTGAGTTTAGTGGGGAAGTCTTCGTATACCAGCATGTGAGGATATGATTAGATAAACATTTCTGTTTTGTTTGTCATTTTAACCTTTTTGCTGCTTGTGTACCATAGTAACTTGTAGTATAGCCCTTAGATACATACACATGGATATGGATACGAATAGCTGGTATATATGGTTGGAGCCTCATATCTCCAATACATCAACTTTATCAATGAATCCTTTAATAATTATATTTTCGATAAGGAAACTAAGGAGTTGCATGGACATAACAACTATTTAAAATGAGGTAAAATTAAATCAAGTCAAAAGTGTATGATTAAAAGACAAGAATCTGATGATTACAAAGAAATTTAGACAAGGAACTTTATGAGGAAGCCACAAAAATAGTAAAGTTATATATATTCCCTAAGAAATCTCCAAATCCAGATACTTCCTCAAAAATATTTTAAATCCCATATAGCCATAGAACTTTTCTGTCCTTGAACACTAGAGAGACAAAAACCAGCCAAAAGATGAACATCTCCTTAGCACGTCTCAGCCTTGCAGCTTAAAGAAAATGCCAAAAGACCCTCCATCCTCGATTAACTCTTTCATTCATACTTTTTCTCATATTACACTGGGGCAAAGAACGTAAGTTATGCCTGTCTTTAGTATTATTTGGCAATTGCAATGGATATCACCCGTAGGGCTAATAATTAAGTGTATAGTAACATTTTCAAAGAACAACAAACATAGCAAAATCTATCATCAAGGACTCTCACTAATAGACTCTATTGCAGATAGAATTCCTACTGCTTATATAGTCTATCATTGATAAACTTGGAGGGTTGAATTTAAATTTTGCTACATTTGCAAATTCTTTTGCATTGTTCTATATATACTTATACTTTGGGCCTAATTACTATATTTTGAACGAGTGAGTGAACAACTTTCAAACAAGACAATCTTTGGCATCAGGAAGTTTATAGGGGTATTTTCTTAGACTAGTCATCACCATGATTGGAGTCATAAGAGGACTCATGGGTTACTAACGGTAGTCATTGTATGATCTTTCTATGCGATTCAATTTATTCTAGTGCTTATGCATTTTACTACTTTATTATCCCCTTTCTTTACATTTTACTTCAAAGACTGTTTAGGGTTGGAGAGGTTATTCCCATGTACTTGACTAAATTTGTGCAATTGTTGTACTACTTTCAGATGCCAAGAAGCAGTTTCAGCAATTTGCCACTCAGACCATTGCTTCTCAGTTCTCCTCTACATTACAATCAGCTTTCAGTGTTGTTTGAAGCATCCTCCAAGCAATGTGAAAGAAAGCAGATGAAAGAAGAGCAATGGCACAAGAGATGTGTTGAGCAGCAGCTCTAAGGGCATGTAAATGTGCATTATTGTAGGTATTACTGGGTTGGATTGGATTTGATTGGTTGGTTGGTTGGTTCTAAACTTTTCTTTTTTCTTCTTTCTTTTTGGATATACAAAGAAAAATATTAAATAATTTTGTACAACTCCCCTTTTCCCAAAGTTTTGTGTTTGTGAAAATCCAATGAAGTGAATCATAGGGAAAAAAACAATACATTAATTTTGGTTTATCCATGTAGTTATAGTTTAAGGCACATGCAATGGAAGAAACATTTTATGCTCATGTTTTATCATCACCTTCATTTGTTTATTTATTTGTTTTTATTTCTTTAGATAAAGGCAATCTCTTTT

mRNA sequence

ATGGATCCCAACCAGCCACCTGTGGAAAATTATGCTAACCCGAAGACTTGTTTCTTTCATGTTCTTTTTAAGGCTGGAGCATTGGCCTTTTACATTCTTTCCTCTCTCTTTTTCAATAGTTTTGTTATCATTTTTGTGGTGACTGTTTTTCTTGCTGCTCTTGACTTTTGGGTCGTGAAGAATGTGAGTGGGCGTATATTGGTTGGTTTAAGGTGGTGGAATGAAATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGTCATTGTCTCGGATGAATAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGCAGTTGCATGGACTGTGCTGGGCATATTCTCGTTGATAAAGTTTCAAGCTGATTATCTCCTTGTCGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATCATTGGCTTTACCAAATGTCGTAAAGATGCCAAGAAGCAGTTTCAGCAATTTGCCACTCAGACCATTGCTTCTCAGTTCTCCTCTACATTACAATCAGCTTTCAGTGTTGTTTGA

Coding sequence (CDS)

ATGGATCCCAACCAGCCACCTGTGGAAAATTATGCTAACCCGAAGACTTGTTTCTTTCATGTTCTTTTTAAGGCTGGAGCATTGGCCTTTTACATTCTTTCCTCTCTCTTTTTCAATAGTTTTGTTATCATTTTTGTGGTGACTGTTTTTCTTGCTGCTCTTGACTTTTGGGTCGTGAAGAATGTGAGTGGGCGTATATTGGTTGGTTTAAGGTGGTGGAATGAAATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGTCATTGTCTCGGATGAATAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGCAGTTGCATGGACTGTGCTGGGCATATTCTCGTTGATAAAGTTTCAAGCTGATTATCTCCTTGTCGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATCATTGGCTTTACCAAATGTCGTAAAGATGCCAAGAAGCAGTTTCAGCAATTTGCCACTCAGACCATTGCTTCTCAGTTCTCCTCTACATTACAATCAGCTTTCAGTGTTGTTTGA

Protein sequence

MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSVV
Homology
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BLAST of CsaV3_4G030590.1 vs. NCBI nr
Match: XP_004151115.1 (PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Cucumis sativus] >XP_008442125.1 PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA isoform X2 [Cucumis melo] >KGN54797.1 hypothetical protein Csa_4G499830 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 2.5e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SVV 184
           SVV
Sbjct: 181 SVV 183

[Close]
BLAST of CsaV3_4G030590.1 vs. NCBI nr
Match: XP_022159687.1 (Golgi apparatus membrane protein-like protein ECHIDNA [Momordica charantia])

HSP 1 Score: 356.7 bits (914), Expect = 4.8e-95
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTA AWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAAAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLS+ANIIGFTKCRKDAKKQ QQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSVANIIGFTKCRKDAKKQLQQFATQTIASQFSSTLQSAF 180

Query: 181 SVV 184
           SVV
Sbjct: 181 SVV 183

[Close]
BLAST of CsaV3_4G030590.1 vs. NCBI nr
Match: XP_022968800.1 (Golgi apparatus membrane protein-like protein ECHIDNA [Cucurbita maxima])

HSP 1 Score: 352.4 bits (903), Expect = 9.0e-94
Identity = 177/183 (96.72%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHV FKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESL+RMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SVV 184
           SVV
Sbjct: 181 SVV 183

[Close]
BLAST of CsaV3_4G030590.1 vs. NCBI nr
Match: XP_016899529.1 (PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA isoform X1 [Cucumis melo])

HSP 1 Score: 351.7 bits (901), Expect = 1.5e-93
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 

Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG 64
           QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG
Sbjct: 6   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG 65

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSL 124
           RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSL
Sbjct: 66  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSL 125

Query: 125 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSVV 184
           IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSVV
Sbjct: 126 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSVV 184

[Close]
BLAST of CsaV3_4G030590.1 vs. NCBI nr
Match: XP_022961589.1 (Golgi apparatus membrane protein-like protein ECHIDNA isoform X2 [Cucurbita moschata] >XP_023515688.1 Golgi apparatus membrane protein-like protein ECHIDNA [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 2.6e-93
Identity = 176/182 (96.70%), Postives = 181/182 (99.45%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHV FKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESL+RMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of CsaV3_4G030590.1 vs. TAIR10
Match: AT1G09330.1 (unknown protein)

HSP 1 Score: 320.1 bits (819), Expect = 9.0e-88
Identity = 159/186 (85.48%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 1   MDPN---QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFW 60
           MDPN   Q PVENYANP+TC FHVLFK  ALAFYILS+LFFNSFVIIFVVTV LAALDFW
Sbjct: 1   MDPNNQIQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFW 60

Query: 61  VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWT 120
           VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLYL A AW 
Sbjct: 61  VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWF 120

Query: 121 VLGIFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQ 180
           +LG+FSLI+FQADYLLVVGVCL+L++ANIIGFTKC+KDAKKQFQQFA+QTIAS+F ST+Q
Sbjct: 121 ILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQ 180

Query: 181 SAFSVV 184
           SAF++V
Sbjct: 181 SAFTLV 186

[Close]
BLAST of CsaV3_4G030590.1 vs. Swiss-Prot
Match: sp|Q8LEK2|TVP23_ARATH (Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana OX=3702 GN=ECH PE=1 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.6e-86
Identity = 159/186 (85.48%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 1   MDPN---QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFW 60
           MDPN   Q PVENYANP+TC FHVLFK  ALAFYILS+LFFNSFVIIFVVTV LAALDFW
Sbjct: 1   MDPNNQIQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFW 60

Query: 61  VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWT 120
           VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLYL A AW 
Sbjct: 61  VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWF 120

Query: 121 VLGIFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQ 180
           +LG+FSLI+FQADYLLVVGVCL+L++ANIIGFTKC+KDAKKQFQQFA+QTIAS+F ST+Q
Sbjct: 121 ILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQ 180

Query: 181 SAFSVV 184
           SAF++V
Sbjct: 181 SAFTLV 186

[Close]
BLAST of CsaV3_4G030590.1 vs. Swiss-Prot
Match: sp|Q8IQC1|TVP23_DROME (Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS=Drosophila melanogaster OX=7227 GN=CG5021 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29
Identity = 67/165 (40.61%), Postives = 97/165 (58.79%), Query Frame = 0 

Query: 9   ENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSGRILV 68
           + Y +P   FFH+ F+  A+  Y+    F +SF+  FV  V   + DFW VKN+SGR+LV
Sbjct: 33  QKYTHPYVTFFHLFFRGAAILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLV 92

Query: 69  GLRWWNEINDLGESVWKFESLDQESL-SRMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKF 128
           GLRWWN ++D G S W FES + ES  SR+NK +  +FW  L L  V W +  +F+L   
Sbjct: 93  GLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGL 152

Query: 129 QADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQF 173
           +  +LL+V + + L+ AN+ G+ KC   A K     AT  + +QF
Sbjct: 153 KFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQF 197

[Close]
BLAST of CsaV3_4G030590.1 vs. Swiss-Prot
Match: sp|Q9Y7K7|TVP23_SCHPO (Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tvp23 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-27
Identity = 69/167 (41.32%), Postives = 100/167 (59.88%), Query Frame = 0 

Query: 12  ANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSGRILVGLR 71
           ++P   FF +LF+ GA+  YIL   F +SF+++F+V   L A+D W VKNVSGR+LVGLR
Sbjct: 46  SHPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLR 105

Query: 72  WWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKFQADY 131
           W NE    GES+W FES D       N  D   FW+ LYL    W +LGI ++I+F+  +
Sbjct: 106 WRNETGVDGESIWIFESADPS--RPRNAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLW 165

Query: 132 LLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQS 179
           L +V V + L+  N   +++C KDAK+++      + +S F S   S
Sbjct: 166 LALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLS 210

[Close]
BLAST of CsaV3_4G030590.1 vs. Swiss-Prot
Match: sp|Q86I95|TV23A_DICDI (Uncharacterized Golgi apparatus membrane protein-like protein 1 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0276319 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-27
Identity = 70/172 (40.70%), Postives = 101/172 (58.72%), Query Frame = 0 

Query: 4   NQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVS 63
           +QP      +P + FFH+ FK  A+A +ILSS     FV+ F++    +A DFWV KNV+
Sbjct: 24  SQPQSNAPKHPISVFFHLFFKIVAVAIFILSSFVNIGFVLTFIIVTLSSAFDFWVTKNVT 83

Query: 64  GRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFS 123
           GR LVGLRWWN+I + G + W FES+  +  S++N  +S +FW  +     AW V  I S
Sbjct: 84  GRKLVGLRWWNQIKEDGTNNWVFESVQDK--SQVNPAESLMFWVPVLAFTAAWFVFSIIS 143

Query: 124 LIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQF----QQFATQTIASQ 172
           L      +L+V  VC  L+ AN++G+ KC KDA+K+     Q +   TI +Q
Sbjct: 144 LFGLSFLWLVVEIVCFLLAGANLLGYIKCAKDARKKVKGMAQSYIVGTIVNQ 193

[Close]
BLAST of CsaV3_4G030590.1 vs. Swiss-Prot
Match: sp|Q29S14|TV23B_BOVIN (Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus OX=9913 GN=TVP23B PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-25
Identity = 61/171 (35.67%), Postives = 95/171 (55.56%), Query Frame = 0 

Query: 4   NQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVS 63
           N+P      +P   FFH+ F+  A+  Y+L  LF +SF+   V  + L + DFW VKNV+
Sbjct: 24  NRPKKSRIRHPVASFFHLFFRVSAIIVYLLCELFSSSFIACMVTIILLLSCDFWAVKNVT 83

Query: 64  GRILVGLRWWNEINDLGESVWKFES--LDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGI 123
           GR++VGLRWWN I++ G+S W FES     +    +++ +S +FW  L    V W V   
Sbjct: 84  GRLMVGLRWWNHIDEDGKSHWVFESRKASPQEGKTVSEAESRIFWLGLVACPVLWVVFAF 143

Query: 124 FSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQF 173
            +L  F+  +L VV + + L  AN+ G+ +C+  ++K     AT  +  QF
Sbjct: 144 SALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATTYLGRQF 194

[Close]
BLAST of CsaV3_4G030590.1 vs. TrEMBL
Match: tr|A0A1S3B4J1|A0A1S3B4J1_CUCME (Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.7e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SVV 184
           SVV
Sbjct: 181 SVV 183

[Close]
BLAST of CsaV3_4G030590.1 vs. TrEMBL
Match: tr|A0A0A0L2G2|A0A0A0L2G2_CUCSA (Golgi apparatus membrane protein TVP23 OS=Cucumis sativus OX=3659 GN=Csa_4G499830 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.7e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SVV 184
           SVV
Sbjct: 181 SVV 183

[Close]
BLAST of CsaV3_4G030590.1 vs. TrEMBL
Match: tr|A0A1S4DU76|A0A1S4DU76_CUCME (Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.0e-93
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 

Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG 64
           QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG
Sbjct: 6   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG 65

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSL 124
           RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSL
Sbjct: 66  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSL 125

Query: 125 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSVV 184
           IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSVV
Sbjct: 126 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSVV 184

[Close]
BLAST of CsaV3_4G030590.1 vs. TrEMBL
Match: tr|B9N466|B9N466_POPTR (Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa OX=3694 GN=POPTR_005G010400v3 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.2e-89
Identity = 168/183 (91.80%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDP+QPP ENYANPKTCFFHVLFKAGALAFYILS+LFFNSFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDPSQPPGENYANPKTCFFHVLFKAGALAFYILSALFFNSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLY+TAVAW VLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYITAVAWIVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLI+FQADY L+VGVCLTLSIANI+GFTKCRKDAKKQFQQFA+QTIAS+ SST+QSAF
Sbjct: 121 IFSLIRFQADYCLIVGVCLTLSIANIVGFTKCRKDAKKQFQQFASQTIASRVSSTIQSAF 180

Query: 181 SVV 184
           SVV
Sbjct: 181 SVV 183

[Close]
BLAST of CsaV3_4G030590.1 vs. TrEMBL
Match: tr|A9PJZ6|A9PJZ6_9ROSI (Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 9.9e-89
Identity = 167/183 (91.26%), Postives = 175/183 (95.63%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60
           MDP QPPVENYANPKTCFFHVLFKAGALAFYILS+LFFNSFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDPIQPPVENYANPKTCFFHVLFKAGALAFYILSTLFFNSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLYL A AW VLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWIVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLI+F+ DY L+VGVCLTLSIANI+GFTKCRKDAKKQFQQFATQTIAS+ SST+QSAF
Sbjct: 121 IFSLIRFEPDYCLIVGVCLTLSIANIVGFTKCRKDAKKQFQQFATQTIASRVSSTIQSAF 180

Query: 181 SVV 184
           SVV
Sbjct: 181 SVV 183

The following BLAST results are available for this feature:
BLAST of CsaV3_4G030590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151115.12.5e-96100.00PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Cucumis sativu... [more]
XP_022159687.14.8e-9598.36Golgi apparatus membrane protein-like protein ECHIDNA [Momordica charantia][more]
XP_022968800.19.0e-9496.72Golgi apparatus membrane protein-like protein ECHIDNA [Cucurbita maxima][more]
XP_016899529.11.5e-93100.00PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA isoform X1 [Cuc... [more]
XP_022961589.12.6e-9396.70Golgi apparatus membrane protein-like protein ECHIDNA isoform X2 [Cucurbita mosc... [more]
BLAST of CsaV3_4G030590.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09330.19.0e-8885.48unknown protein[more]
BLAST of CsaV3_4G030590.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LEK2|TVP23_ARATH1.6e-8685.48Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana OX... [more]
sp|Q8IQC1|TVP23_DROME1.8e-2940.61Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS=Drosophi... [more]
sp|Q9Y7K7|TVP23_SCHPO2.2e-2741.32Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe (strain 972 ... [more]
sp|Q86I95|TV23A_DICDI6.5e-2740.70Uncharacterized Golgi apparatus membrane protein-like protein 1 OS=Dictyostelium... [more]
sp|Q29S14|TV23B_BOVIN2.7e-2535.67Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus OX=9913 GN=TVP23B... [more]
BLAST of CsaV3_4G030590.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4J1|A0A1S3B4J1_CUCME1.7e-96100.00Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 P... [more]
tr|A0A0A0L2G2|A0A0A0L2G2_CUCSA1.7e-96100.00Golgi apparatus membrane protein TVP23 OS=Cucumis sativus OX=3659 GN=Csa_4G49983... [more]
tr|A0A1S4DU76|A0A1S4DU76_CUCME1.0e-93100.00Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 P... [more]
tr|B9N466|B9N466_POPTR1.2e-8991.80Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa OX=3694 GN=POPTR_0... [more]
tr|A9PJZ6|A9PJZ6_9ROSI9.9e-8991.26Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa x Populus deltoide... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR008564TVP23-like
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G030590CsaV3_4G030590gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G030590.1CsaV3_4G030590.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G030590.1.exon1CsaV3_4G030590.1.exon1exon
CsaV3_4G030590.1.exon2CsaV3_4G030590.1.exon2exon
CsaV3_4G030590.1.exon3CsaV3_4G030590.1.exon3exon
CsaV3_4G030590.1.exon4CsaV3_4G030590.1.exon4exon
CsaV3_4G030590.1.exon5CsaV3_4G030590.1.exon5exon
CsaV3_4G030590.1.exon6CsaV3_4G030590.1.exon6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G030590.1.cds1CsaV3_4G030590.1.cds1CDS
CsaV3_4G030590.1.cds2CsaV3_4G030590.1.cds2CDS
CsaV3_4G030590.1.cds3CsaV3_4G030590.1.cds3CDS
CsaV3_4G030590.1.cds4CsaV3_4G030590.1.cds4CDS
CsaV3_4G030590.1.cds5CsaV3_4G030590.1.cds5CDS
CsaV3_4G030590.1.cds6CsaV3_4G030590.1.cds6CDS


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008564Golgi apparatus membrane protein TVP23-likePFAMPF05832DUF846coord: 13..152
e-value: 4.3E-48
score: 162.8
IPR008564Golgi apparatus membrane protein TVP23-likePANTHERPTHR13019UNCHARACTERIZEDcoord: 1..182
NoneNo IPR availablePANTHERPTHR13019:SF14SUBFAMILY NOT NAMEDcoord: 1..182