CsaV3_4G030360.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G030360.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProteinase inhibitor I25, cystatin
Locationchr4 : 20188795 .. 20192341 (-)
Sequence length396
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGCATCAATAGTTTGACTAAGATGGTAGAATAATCTTTTGTCTCCAAACAAATGAATTGATTCGAAACTATCCCCTAATCCATCCATTGGGAGTTTACATAGATGTGGATTAGATTCTATGTTATCAATGATGTGATGTTGAAAACAACAGTTATATAGAAATACCAAACTTGATCTCAATATTAATATCATATTGAGATCAATGAAGGGTTAGAAAATGTTTAGCCACCAAAGGTATTGTATAATGAGTGTTGAAGAAGCATATCACACTTCGAAACCTATCGAGGATATAAATGATGATCTGCAAGTGCAGTCAATCATAGGACAGTTGGCTGTTGAAGACCATAACAAGAAAACAGGAGACAATTTGGAGCTTGTGGATGTGGTGAATGGTTTGAGAAGTGGAATTTTTGTTCAACCTGGGAGTACTCATGAAGGAATATTATATCATCTTTTGGTGGAGGCTAAAACCATAGAAGGAATTAATTGGACATATGTGGCCAAGTTGTTAGAGCTTTACGTAGGCTGCCGAATAAGGTATGAATTCAAATCTTTTGAACCTCTTCTCCCATACTACAACCCCTAATCTAATATTTTACCCTCATCTCTCTACCCTACTTCTCACTCACATTCTAATTAAATAAATTGTATCTTTGTATATCAAAAATGTTCCTACCATATATATAAAAAAAAAGTAGTATTGAATATATTTATATTTTTAGTTTTGGGTAAATTACAAAAACCATATTTAAACATTTGAATTCAGCTTGTAATAATGATACGATTTATACACTTATCTAAGTTTGAGAATCCAATTTTAAAATTTGAATATATTTGAAAGTTTAATGTATTGTGCATATATGTATGTACGTGTCATTCCTAACTATTATTTGTGCGTATTCATGTGTGTGATCTCCGATTATCATTGTGCCTATAAGCACCGACAAATTTAGTATAGGCCTAGGAGGATCGAGTTCTCCCTCAACTTTATTATCTTTATAATATATGTATAAACAAAACTAATTAATGTTTAATATTTATTGATAGTTTAGTGGTAACTATGCTTGTCAATCTCTCTTTCGATCAGAGATCAAGTCCCTATAAGTGATGTGTATCAAAACCGAAAACACCTTAATTCCCACAACTCATAAGAACATTATAATCTCTTTTTTATTTTTTATTTTTTTCAATTTAACTCAAATTAATTCAATTTATTTTTATCATTTTTTTGGGTTCATTTGTATCAACCAATATCTACTGCTTTCTATCCTAAAACTAAATGATGACAAATAGTTAATCCAAGAAGGAAAATTGAGGAAGTTTGATATTAATAAAATTAGAGGCACTTGCATTCATCCAAAAATATAAAATTAAAATTAAGCTCATGATCCAACATTTTAAAATTTGGAAGAATGACAAATTAATTGCTACAATCCAATTGGTTTGATTATCAATAATATCGATTTGTCTGTTCTTTGACTACTGTCCGATTGTTATTTGATGTTCATTGTTATATGATTGTTAATGATACCGATTTATCATCTCCTTGTTATTTAATTTAATATTAATTTTTATTTAATTACAAATGATACTAATTGCTATATATGATTTTACTTTTTTTTTTATATAATTACTATGTAGGATTATATGATATAATCATCTCATCACCTTCCAGTTTTTTTTTTTTTTTTTTTGTTAATTATTAAGTAGTTTCTATCACACCCTCTCCTGAAGCCTTTCTCTAACTCCTAACCTTGGCCCCAAAAGAGGGTGTGAGGGTTGACAAGGATTGCCATAGTTTGACAACACTTACTAACCATTTAACCTAACCGACCCAACCAAAAGTCACAAAATAACTTAAGAAAACAATATAAGCTATATGTTTTGCAAATAACTCGAACTACTAGCTACAACCTTAAAGTGTTATTAAAGCATTTTAGTGTAAATTTTGCTTTGATGTTAGTTTTAAACTGACATTATAGATGCCCTACAATGTTAATGTCTTCTGCATCGGTTTGTCACAAATTTTATTCAATAATTACCATATTGTCCAATCCATTTTTAACGACGATCAAATACTTAAAAATCGACATCAAATGTATCGGTATATATTGTTTACGCATGTGCAAATAAATAATCTTTTTTTTTTCAAGAAGCAATAATATCTCTTCTATTGTATACAACATAACTCTCAACAACACAAAATTTATCTCATTCACAACAAAGAAAGTGACAAATCGCTTAACTAAGTAACCTATTAGCAAATTACATTGATCAATATATACCCAAAGCTTTCAAAGTATAACGAACGAGGGAGTTGTCTAATATGAAGGATCATAGAGTTGTTGTCCCAAAAATATCTCAGTAAGGAAGATATGCTCACTTTAAGTACATAAAACAAATAATTAAAAATAAATTATTAATACCAAAAGAAATTTTTTTTTAAAAAAAGTACAAAACTTATATTTAATTTATACAAACTATTAAACCATGGAAGACTTAAAATCATATAACTTTAGACAACCAGCATATATTAAATTCCTAGAATTAAAACAATCTAACTTTCAAAAGTTATAAGGAGAATTATGGAGGGAGATATCATTTACAAAATAATATCTAAAATTAAGTACCCAATAATAAATCAAATATCAATTAAAAATGTTTCCATTATTTATCTTCATTTCTTTTTCTTTCAAATACCCAGTTGTCGCCCCCTCTTCACAGTGCTCTGTCCGGCCACAACTTCCATCATCGAACCCACCTCCATTCGACAAAGGTAGCCGCGAGCCAAAGCTTCCTCTTCGCTCCATCATGTCTTGATTCGTGAAGTCGAGTTGAGCCGCTTCGTCATCGAGCTCCCTGCGCAGGATTTTCAAAGTCAAACCAAGTGTCAGCCTTGAGTTGTCGTCCTTGACGCTTTTCGTTGCTCGTTGATGCTCTCTGTAGCTGCTACTCAAGTTTTGGTTAAGATGGTGATTTTGGTAGGTGTTCTTTTTTAGGCTTTATTGGGGATTTCTAATAGGAAACTTGCGGTGGGTAGCATTTTGAAAATATGACAATATAGCAAATATTGTTTTAGAATTTTGCAAATACGACAAAATTCTCACGTCTGAAAATATTTTTCATCTAAAATTTGTTATTATTTCCAAATTACCATTCAATAACTTATTTCTTCTTCTCTTTTTAATGCCTTAATCATCCCTTATTTCTTCTTCCATTTTTTAAGGCTTTGATCATCTTTTTTTTATACGGGATAAAAATAATTTGTGCTTTCTGTCTTAATCTTGATTTTAGAATATCAATGGTACATTAATTGCAATATGAAATATAATAGTTATTGATCAGAGTAATCTAACTTCGTTTTTGAATTTTCTCTACTTTTCTTGATGTGTATTTTGAGTTAAATCTGATTTTAAATGATTTTGTTTTGTTTTTCTACATTGGTTTTGTTTTGGTTTTACTTAATTTGTATAAGTCGTTTTGTATATTAGTGTTCTGATGAACTTATATTATGTATTAGTTGGTTGATATACTTACTACGTG

mRNA sequence

ATGTTTAGCCACCAAAGGTATTGTATAATGAGTGTTGAAGAAGCATATCACACTTCGAAACCTATCGAGGATATAAATGATGATCTGCAAGTGCAGTCAATCATAGGACAGTTGGCTGTTGAAGACCATAACAAGAAAACAGGAGACAATTTGGAGCTTGTGGATGTGGTGAATGGTTTGAGAAGTGGAATTTTTGTTCAACCTGGGAGTACTCATGAAGGAATATTATATCATCTTTTGGTGGAGGCTAAAACCATAGAAGGAATTAATTGGACATATGTGGCCAAGTTGTTAGAGCTTTACGTAGGCTGCCGAATAAGTTGTCGCCCCCTCTTCACAGTGCTCTGTCCGGCCACAACTTCCATCATCGAACCCACCTCCATTCGACAAAGGTAG

Coding sequence (CDS)

ATGTTTAGCCACCAAAGGTATTGTATAATGAGTGTTGAAGAAGCATATCACACTTCGAAACCTATCGAGGATATAAATGATGATCTGCAAGTGCAGTCAATCATAGGACAGTTGGCTGTTGAAGACCATAACAAGAAAACAGGAGACAATTTGGAGCTTGTGGATGTGGTGAATGGTTTGAGAAGTGGAATTTTTGTTCAACCTGGGAGTACTCATGAAGGAATATTATATCATCTTTTGGTGGAGGCTAAAACCATAGAAGGAATTAATTGGACATATGTGGCCAAGTTGTTAGAGCTTTACGTAGGCTGCCGAATAAGTTGTCGCCCCCTCTTCACAGTGCTCTGTCCGGCCACAACTTCCATCATCGAACCCACCTCCATTCGACAAAGGTAG

Protein sequence

MFSHQRYCIMSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGLRSGIFVQPGSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRISCRPLFTVLCPATTSIIEPTSIRQR
Homology
[Close]
BLAST of CsaV3_4G030360.1 vs. NCBI nr
Match: KGN54821.1 (Proteinase inhibitor I25, cystatin [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MFSHQRYCIMSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGL 60
           MFSHQRYCIMSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGL
Sbjct: 1   MFSHQRYCIMSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGL 60

Query: 61  RSGIFVQPGSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI 107
           RSGIFVQPGSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI
Sbjct: 61  RSGIFVQPGSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI 106

[Close]
BLAST of CsaV3_4G030360.1 vs. NCBI nr
Match: KGN54824.1 (hypothetical protein Csa_4G508520 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 10  MSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNK-KTGDNLELVDVVNGLRSGIFVQP 69
           MS+EE +H  KPI DIND   VQ IIG+LAVEDH+    G+ L+ V VVNGL+S  ++ P
Sbjct: 1   MSIEEIHHRLKPIIDINDP-HVQ-IIGKLAVEDHDSHNPGEKLKFVRVVNGLKSDKYIGP 60

Query: 70  GSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI 107
           G T E ILYHL++EAKT E INWTY  KL ++Y GC I
Sbjct: 61  GFT-EVILYHLVLEAKTNEEINWTYATKLEKVYSGCLI 95

[Close]
BLAST of CsaV3_4G030360.1 vs. NCBI nr
Match: KGN54823.1 (hypothetical protein Csa_4G508510 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 0 

Query: 10  MSVEEAYHTSKPIEDINDDLQVQSIIGQLAVED-HNKKTGDNLELVDVVNGLRSGIFVQP 69
           MS+EE+ H  KPI DIND   VQ+ +G+LAVE+ ++K +G+ L+ V VVNGL+S  ++ P
Sbjct: 1   MSIEESRHRLKPIIDINDP-HVQA-LGELAVENLYSKNSGEKLKFVRVVNGLKSDKYIGP 60

Query: 70  GSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVG 104
           G T E ILYHL++EAKT E INWTY  KL E+  G
Sbjct: 61  GFT-EVILYHLVLEAKTNEEINWTYATKLEEVSGG 92

[Close]
BLAST of CsaV3_4G030360.1 vs. NCBI nr
Match: XP_008442277.1 (PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 10 MSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGLRSGIFVQPG 69
          MS+  A+   KPIEDIND+L+VQ  +G L V+DHNKKTG+NL+ V VVNGL +  F  P 
Sbjct: 1  MSIMSAF---KPIEDINDNLEVQD-LGNLTVDDHNKKTGENLKFVRVVNGLAAS-FSDPI 60

Query: 70 STHEGILYHLLVEAKTIEGINWTYVAKL 98
          S   G+LY L++EA T   INWTY A++
Sbjct: 61 SPLGGVLYELVLEAITTSKINWTYKARV 83

[Close]
BLAST of CsaV3_4G030360.1 vs. TrEMBL
Match: tr|A0A0A0L3W1|A0A0A0L3W1_CUCSA (Proteinase inhibitor I25, cystatin OS=Cucumis sativus OX=3659 GN=Csa_4G508490 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 7.4e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MFSHQRYCIMSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGL 60
           MFSHQRYCIMSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGL
Sbjct: 1   MFSHQRYCIMSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGL 60

Query: 61  RSGIFVQPGSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI 107
           RSGIFVQPGSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI
Sbjct: 61  RSGIFVQPGSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI 106

[Close]
BLAST of CsaV3_4G030360.1 vs. TrEMBL
Match: tr|A0A0A0L191|A0A0A0L191_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508520 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-18
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 10  MSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNK-KTGDNLELVDVVNGLRSGIFVQP 69
           MS+EE +H  KPI DIND   VQ IIG+LAVEDH+    G+ L+ V VVNGL+S  ++ P
Sbjct: 1   MSIEEIHHRLKPIIDINDP-HVQ-IIGKLAVEDHDSHNPGEKLKFVRVVNGLKSDKYIGP 60

Query: 70  GSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVGCRI 107
           G T E ILYHL++EAKT E INWTY  KL ++Y GC I
Sbjct: 61  GFT-EVILYHLVLEAKTNEEINWTYATKLEKVYSGCLI 95

[Close]
BLAST of CsaV3_4G030360.1 vs. TrEMBL
Match: tr|A0A0A0KZ98|A0A0A0KZ98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508510 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-15
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 0 

Query: 10  MSVEEAYHTSKPIEDINDDLQVQSIIGQLAVED-HNKKTGDNLELVDVVNGLRSGIFVQP 69
           MS+EE+ H  KPI DIND   VQ+ +G+LAVE+ ++K +G+ L+ V VVNGL+S  ++ P
Sbjct: 1   MSIEESRHRLKPIIDINDP-HVQA-LGELAVENLYSKNSGEKLKFVRVVNGLKSDKYIGP 60

Query: 70  GSTHEGILYHLLVEAKTIEGINWTYVAKLLELYVG 104
           G T E ILYHL++EAKT E INWTY  KL E+  G
Sbjct: 61  GFT-EVILYHLVLEAKTNEEINWTYATKLEEVSGG 92

[Close]
BLAST of CsaV3_4G030360.1 vs. TrEMBL
Match: tr|A0A1S3B5B9|A0A1S3B5B9_CUCME (Cysteine proteinase inhibitor OS=Cucumis melo OX=3656 GN=LOC103486185 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 10 MSVEEAYHTSKPIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGLRSGIFVQPG 69
          MS+  A+   KPIEDIND+L+VQ  +G L V+DHNKKTG+NL+ V VVNGL +  F  P 
Sbjct: 1  MSIMSAF---KPIEDINDNLEVQD-LGNLTVDDHNKKTGENLKFVRVVNGLAAS-FSDPI 60

Query: 70 STHEGILYHLLVEAKTIEGINWTYVAKL 98
          S   G+LY L++EA T   INWTY A++
Sbjct: 61 SPLGGVLYELVLEAITTSKINWTYKARV 83

[Close]
BLAST of CsaV3_4G030360.1 vs. TrEMBL
Match: tr|A0A0A0KNL2|A0A0A0KNL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 0 

Query: 21 PIEDINDDLQVQSIIGQLAVEDHNK-KTGDNLELVDVVNGLRSGIFVQPGSTHEGILYHL 80
          PI+D+ D  ++Q  IG +AV  HN+  TG+NLE V V+NGL      + G     I+Y L
Sbjct: 22 PIKDV-DSEEIQG-IGGMAVRMHNETSTGENLEFVKVINGL------EKGRRGFQIVYTL 81

Query: 81 LVEAKTIEGINWTYVAKLL 99
          ++ AK   GI WTY AK++
Sbjct: 82 VLSAKNSLGIVWTYKAKVI 92

The following BLAST results are available for this feature:
BLAST of CsaV3_4G030360.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54821.11.1e-53100.00Proteinase inhibitor I25, cystatin [Cucumis sativus][more]
KGN54824.19.9e-1858.16hypothetical protein Csa_4G508520 [Cucumis sativus][more]
KGN54823.11.3e-1454.74hypothetical protein Csa_4G508510 [Cucumis sativus][more]
XP_008442277.12.3e-1454.55PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo][more]
BLAST of CsaV3_4G030360.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G030360.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G030360.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3W1|A0A0A0L3W1_CUCSA7.4e-54100.00Proteinase inhibitor I25, cystatin OS=Cucumis sativus OX=3659 GN=Csa_4G508490 PE... [more]
tr|A0A0A0L191|A0A0A0L191_CUCSA6.5e-1858.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508520 PE=4 SV=1[more]
tr|A0A0A0KZ98|A0A0A0KZ98_CUCSA8.8e-1554.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508510 PE=4 SV=1[more]
tr|A0A1S3B5B9|A0A1S3B5B9_CUCME1.5e-1454.55Cysteine proteinase inhibitor OS=Cucumis melo OX=3656 GN=LOC103486185 PE=3 SV=1[more]
tr|A0A0A0KNL2|A0A0A0KNL2_CUCSA7.0e-0443.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G030360CsaV3_4G030360gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G030360.1.cds2CsaV3_4G030360.1.cds2CDS
CsaV3_4G030360.1.cds1CsaV3_4G030360.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G030360.1.exon2CsaV3_4G030360.1.exon2exon
CsaV3_4G030360.1.exon1CsaV3_4G030360.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G030360.1CsaV3_4G030360.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 16..103
e-value: 9.0E-9
score: 37.2
NoneNo IPR availableSUPERFAMILYSSF54403Cystatin/monellincoord: 22..99