CsaV3_4G029760.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029760.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 19418632 .. 19419148 (-)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAATATATAATTATTTACTAATTTTGTTGTTCATTTTTCATTTAATTTAAATCAAATTGGAATCAAACAGAAACTACAATCGAAACAAGAGATTAAAAATAATAAAAAAAACGTCAAATTATTATTTACTAATTTTGTTGTTCACTCGTCGGGTAATAGGTCTTCCTGTGATGCATACAAGATGGTGTCAGAGATAGTTTGCACGACGCAACATTAGAAAAAACCTTCTTCCGACGTTTACTCGAAGTCGGGAGAGTCATCTAGGCTCCCCCGACACCATGATGTCGTCGACATAATGAACGTCAAGGAAAGGACAGTCCCGACGAATCTTCTGTATTATGTCGGGAATGATTCTCCCGACATGAATTTTCGAACGTCCTTCCCAACGTTGAAGAGAACGTCGAGAAACCTTGTCCCGACGCGTTTTGTAACCATCCCTGACGTTGCACTACATCAGGAAACATCCGACTTCTTGTAGCGTAATGTGTAAAAGTATAATCACGAAACAAATATT

mRNA sequence

ATGAACGTCAAGGAAAGGACAGTCCCGACGAATCTTCTGTATTATGTCGGGAATGATTCTCCCGACATGAATTTTCGAACGTCCTTCCCAACGTTGAAGAGAACGTCGAGAAACCTTGTCCCGACGCGTTTTGTAACCATCCCTGACGTTGCACTACATCAGGAAACATCCGACTTCTTGTAG

Coding sequence (CDS)

ATGAACGTCAAGGAAAGGACAGTCCCGACGAATCTTCTGTATTATGTCGGGAATGATTCTCCCGACATGAATTTTCGAACGTCCTTCCCAACGTTGAAGAGAACGTCGAGAAACCTTGTCCCGACGCGTTTTGTAACCATCCCTGACGTTGCACTACATCAGGAAACATCCGACTTCTTGTAG

Protein sequence

MNVKERTVPTNLLYYVGNDSPDMNFRTSFPTLKRTSRNLVPTRFVTIPDVALHQETSDFL
Homology
[Close]
BLAST of CsaV3_4G029760.1 vs. NCBI nr
Match: KGN54726.1 (hypothetical protein Csa_4G435980 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MNVKERTVPTNLLYYVGNDSPDMNFRTSFPTLKRTSRNLVPTRFVTIPDVALHQETSDFL 60
          MNVKERTVPTNLLYYVGNDSPDMNFRTSFPTLKRTSRNLVPTRFVTIPDVALHQETSDFL
Sbjct: 1  MNVKERTVPTNLLYYVGNDSPDMNFRTSFPTLKRTSRNLVPTRFVTIPDVALHQETSDFL 60

[Close]
BLAST of CsaV3_4G029760.1 vs. TrEMBL
Match: tr|A0A0A0L3K8|A0A0A0L3K8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G435980 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MNVKERTVPTNLLYYVGNDSPDMNFRTSFPTLKRTSRNLVPTRFVTIPDVALHQETSDFL 60
          MNVKERTVPTNLLYYVGNDSPDMNFRTSFPTLKRTSRNLVPTRFVTIPDVALHQETSDFL
Sbjct: 1  MNVKERTVPTNLLYYVGNDSPDMNFRTSFPTLKRTSRNLVPTRFVTIPDVALHQETSDFL 60

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54726.14.6e-26100.00hypothetical protein Csa_4G435980 [Cucumis sativus][more]
BLAST of CsaV3_4G029760.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029760.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029760.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3K8|A0A0A0L3K8_CUCSA3.0e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G435980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G029760CsaV3_4G029760gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G029760.1.cds1CsaV3_4G029760.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G029760.1.exon1CsaV3_4G029760.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G029760.1CsaV3_4G029760.1-proteinpolypeptide