CsaV3_4G028030.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G028030.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DNA topoisomerase 2-binding protein 1
Location	chr4 : 17422137 .. 17435718 (+)
Sequence length	1107

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAATCCTTGAGTGCTTAATGTTATACTGGAGACTCTCAAAACCAATTTTTAGAAGAAGTTATTCTACCTTAAAAATGTATAAAGTTATATTGGGGACTTTCTAAACCAATTTTTATAAACTTAGAGACTAAAAAGGTGCATGACCAAATGGGTCTATTTTTCTAAACCTGGAGACTAAAAATGTACATTTTTAAAACTCAAGAACCAAACACACGTGTTCTTCAAAACTTGGGGAGTAATTTTCCTAAAAAATTTAAGATAGTGCCAAATGTCATTTAGCATGTGAAATAATTACGATTTTCATTTTTCATTTGAGGAATATGCCTTCAAATTTTTTTTACATTTTATTTTTGAACACTAACAAACATGCATCAACTTTTGACTTCCATAATCCCAAATATTTTTTATGTATATTTTGAGATCATATTTGAAATTCTCCTACTAGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGCGAGGTTGTTGAAGATCACATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTCATCGGGTTCGATCATGTTTAGAGGTAAGCGATAATTAATTGTCTTATTTGTGATTTCCGTTTTAGAGCTCTACTATTTTTTGTTTGTGTTTCCCTTTTTGGACATAAAAGTCCACACAAGGTTGAATAGCATATTTTGTTTCATTTAGCCACTGCAAGTTTGGATTGTGTTTGGGTTGGAGCTTTGAATTTTGAGGGACTTTAGTTTTGTGTTGAGCCACGCTCTTATAATATGAAGGATGGATACTGTTTTTTCCAAAACCAAACGCACATCAGTTTTCTAAGATTACAACAACTGTCCTCCCAGTGTAAAAAAAGGTATCCTCAAACCAACCAAAAGAAGGGGAATATGTGAGCAAGATTTATAGTTAATAAATCATCAAAAGTAAATTAGAGTTGGACTCGAGAACTCTTGCTGATGTATAGGAAAAGCAGACAAGGTATGGGAATATAAATTAAAACAGCCTTTAGATGAAAAGGGCTGCTACAACTGATCCTACCTCAAATGGCGGTACCAAAATATAGGACTTGAACCTCAGTCTTCTCCCTCGCCCGTTGTTCTTGGCAATGTTAAAGTATCTCAATTCGTACACATTCATCTCCTTGTTTGAAGCAATAACTCAAAGCCAATCTCTAATGTTGTGTTTCTTGAAATTCTTCTTAGCCAAGTATTTAAGATTCCTCTTGGAGAAGTAGCTATTGGAGTTGATGTTGATCTTGTTCTTGTCCTGAGTGATAGTGTCTGAGTTATCAAGTGTCTCTGCCACCCCAGCTTTGTTGGTCTGATGAGGTGATCGCCGTGATCTTGTCCTCAACTGGCATCACACAATCAAATGGTCACATCCTTATTTTTTCCCTTCGGGCCACCAGATGCGGCTGGTCCATGTAGAAAATATGTTTCAACCTGACAATAGGAACTGTTCTAGTTCAAATTGTTTTTAATAATATGAAAAAGTGTGTAAAAAATGTAAAATACTAAATTGATTTGAAATGACTCTCGAACCGATGGTATTGGGAGGCGTTTGGTCAGAAAACCGTAAAGAAATGCTTAGATGTCTCAAACTGATGCAAATATGAGCGTGTGTGAAAACGTTACTGATATTGCTGTTAAATATAATAAACCAAATGAGAGCGAAATTTGCTCTGCTACTTGTTTCTCTAACTCTGCATCTGTATAGAACAATTGGCATAAATGGTGGATACTATTAAATTGGAAAATGGAGATTCAATCAGTTCTATCATTTTGACCTTTTGATGTTTAGGGGAAGGTGGTAACATAAATTTACCTTCTCAGACTATCCATTAAGGTTGGTCTGAAAAGAAAAGGGTGGTCTATCTTGGAAAACATATTTGGTTGTTCTCTTTTTTTCTTCACTCTGTCTACATTTTGGAAATATGAGTGCTATCATTGTGTGAGAGGTTTCTTTATTGACAAAATTAATTGGAGTTCAACATTTGAAGAAGTCTTTCTATGACTGTCCCTTGAACTCCAAAGGTTTGCACTCCATCCCTGTGCCAAACAAATAGATGCTTCTTATATATTTTTCTGGTGTAATTGAGAAAGTATTGATGCACACTTCTGTTAAATGCGTTAAATTACGGCTTTGAAGCCAATTTTGAATGGATAGCTGGCGTAGAAACTGCCATTATTGATGAAATTTGATACTACTGATGTTTTTTAATTTTAATTTTATATTATTATTAATTTCGTAACCTAATTATGTTCAATATCTTAAACTGATATTTGAAATGAGAATTGAATATTTATCTTGTTTTTATTTGTTTACTGACTATTTCAAATAAATTCGTTATGAAGGATGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAGGTACCTTTGCGATTTTGTTGCTTTTCAATTATATATGTTCACGTACATGCATATCCTGATAGAATTCTAGACCCATTGTGTTTATATTTCTTCTCTTAGATATGGAATGATTTTGTTTGAATACAAAACTTTCAGAGAAAGATTGTCTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCAGGCTTATGCACTGTCAGCCAATTTCCTACTCAAGCTGCCCCAATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTACCATTCCGAGAGACCAATCAGCTGGAACTAACAGTAGCTTTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAAAAAGCGCAAGTTCTTTGACGAAGCCATACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATTGAGGACTTATTGGAGCAGACAACTAAGGTAAAATCTGGTTTGAGCTACAATTCCTTTTACTTCATTCCATTTTTATTTTATTTTTTTCCTTCAAATCCTTTTGTTTTCCTTTCTTTTTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGATAAAAGTGTATCCTTCTATTAGGATTGATGTTTTTTATGTTTAAACTTTTGGTTTCGTTTGCATTTGGTTTAATCCTTAATGGTACCAGATTTTCCCGCCAGACTGTTCGCTTGTTGGTCAAGACCATTCAGAAACTTCTCCAATTGGTGCTTTATCTAACCAGTGGTCAAAAAGGTAATTTTTGCCGTTGTCTCCTTGATCTTCTTATGGAAAGACCATGCTGAATTGAAGTGTTTAACAAGAACGGTCGCTGACTGGAAATATAGTGAGACCATTCAACAAAGTCATTATGAAAGTCAGTTTATTTTCACTATAAGAGAAATATTTTTTTATATTCTTTTAGTCTCTACTGATGAATTGCTTCCTAGAACAATATAATTTATAATTTCTTCCTAGAACAATATAATTTATAATTTCTTTCAAAATAGGTTCGTTTGAGTAATAGTATTAATTATAAAACTCAAATCACACCGTTTGCAATGCTTGAAAACCAGTATTCACAAATAAATGCTATCCTTGAGCATTAACTTTTTTCATGGGACACTTGCAAAAATGGTAAAACAAGTTATAACTTTATTATTTGTGAAAATGATCAAATAAAGTTCAGCCCACCCATATAAAAGCCTGGATTTGATTATTTTTGCTATATTTTCAAAATCACAAACCTTTAAGACATTTTTGCAAAATCCCTAAACTAATTTGCCTCCCAATACAATTTTCCTTTTTCATTTTAGAAAAACCAGGTTTGGAAATAAATGCAGTAGGTTATTTCTTTATAAACTAGCCATTAAATATCCCTGTATTCTAAGTGGATCTTAGCATAATGCAAGCTTTAGTGTTTTTTCCAGAAAGACTATTATGTTCGAACGCAATTCAATTTTGCCTTTGTAACTCGGTTTTTGAGACCTTTGTGTCTTGTATTTTCTCAGAGCTGAAAGAAAAGAAGATGTCGGCAATTCTACTACTGAAGATGGGACTGTGGGCATATGTGATGGCTTTAGTGAAACACAAACGGAGTCTCAGGTGTGTGGCCATTTTTCTTTTTGCCAACTATAACTCTATCAATTATAGTAAATTTTTTTTTAAATTGCCACCATTTTCGTCAACTTGATTACAAGAGGACTAAAGAACGAACTATAACTCATAAGATTTTTTATGGAGTAGGAATTAGGGTATTATGGTCAAATTCTTAATATATTAGGATTATGATTAGTTTCTTTTATTAATTAGAACTAGGATTAGTTTGATTTGAATAGAGTACTTGTCTTCTTGTATTCACAAATTTAAATATTAATAAAATTCTCTCATTTGGTCTACACTAAATTGTTATCGGTATTAGAGCAACCGTTTGGACCAACTTTGATTGCCATCGGTGGAAAATTGGAAAATTTTTCGTGATGCTGATCAGAAGAGGGAGCCTTGTGAGTTGTTCGCATTGCTAAACAACACACATCTAACTGGGCGAACCCTTAAAATTAAAAAAGAAAAGAAGAATGAAATTCATCCTAATTTTGCATGGATGCATTAGTACACGTCAAGGAAGACAGAGGTGAAGAAAAAATATACTAGTTGGCTAGTTGGTATAGGCAAGAAAGTCAAATTTCCTCCCAAATGAAGAATTGGAATTCTGATTCAAGTGATTCAAAAGAAGAATTCTAACACAATAATTTTGCTCGTGCTTGATTTTCTCAAAGAACCTATCATTATCCACATTTGAAATTTGGTTATAGTGATTCTAGCGATTTCATCAAAGATTCTAATGCAGTTTGGAACAAAATAACAAGGATGGACGGTGGTAAAAATATCAAGACAGATGGAACTTGTCTTGATGAACCTTTCTTAATGAGACGAGGAAAACTGAGAACATGAACGGACCTACCAAATAGTGGCAGGAAGAGGTTTTAGAGAAAAAATCAAGAGGCAATTGGAACTCACAGAAGACGGATCACAACATAGTTTTTCGAACTCCAAGATTCCAAGAATCCATCCAAGAAGTTCAAGACTCGGGAAATTTTCCATTCAAAAGGGAAGGCGATAGACCAACCCGAGTAGGAAGGCAATATTTTCAGAAAAATTATGACCAAGTTCAAGAAGAAAGACAAGAAGATAAATTCCACATACCTTCATTCCTTGGCAATTCATACTTCAAAACTTCTCTTGATTGAAAGGGAGACAAACAAACACACAACTTTACGTGGAAATTCGATTACTGGGAGAAAAACCACGATATTTTTCTTATTATTTTTTGATAAATGATACAATAGATATAAGGAGAATAAGTAGAATATACAAGGAATAAAAAAAGGAAAAAATTTAGGAATTAAGGAAAATATTCCCATAATCTTTTCATAAATATTTTAAGATTCTAACACTCCCCCTCAAGCTGGGATATAAATATCAATGAGACCTAACTTGCTAACACAAAAGTCGAAGTTTGGTTTGAGAAGCCCCTTGGTAAGAACATCAGCAACTTGTTGACTCGAAGGGATGTATGGAGTGCATATGCTCCCTCTGTCATCCCCGATCAATCTCAACATGTTTAGTTCTATCATGTTGAATATGATTGTTAGCAATACTAATAACGACTTCATTATCACAACAAAACTTCAATGGTATCTCACATTCGTGATGAAGATTCGACAGGACTTTCTAGAGCCATTTTTCCTCACATATTCCCAAATTCAACTTTATATTCAGCCTCAGCGCTGCTCCTTACCACAACACTTTGCTTCTTACTCCTTCAAGTTACAAGATTGCCCCAAACGAAGGTACAATAACTGGAGATAGACTTTCTGTCAACAACAGATCTTGCCTAATCCGAGTCAGTATATGCGTCAATGGTCTTTCTATCTATTTTTTTAAACATCAATCTTTTACCATGTGTTGTTTTCAAGTATGAATTTTGTTGACAGCTTCCATGTGTTTCTCATAAGGAGCGTGCATAAACTGGCAGACAACACTCACAACAAAGGAAATATTAGGACGAGTATGGAATAAGTAAATCAATTTACCCACGAGGTGTTGGTATTGTTCTTTATCAACTGGAACTTGATCATCAGAGTTTCCTAGTTTATAGTTAAATTCAATAGGAGAGTTTCCTAGTTTATAGTTAAATTCAATAGGAGCGTCAGCAGGACAACATCCCAACATACTTGTCTTGGTTAGCAAATCAATGGTGCATTTTCTCTGGGACACGGAGATCCCTGCTTTAGATCTGGCCACCTCCATTCCAAAGAAATATTTAGATTTTCCAAATCCTTGATTTCAAATTAATTACCCATTCTCTACTTAAGTTGACTAATTTCAGCCTGATTATCTCCAGACAAAACAATATCATCCACATAAACTATTAAGATTGCAATCTTCCTTGTCTTGGAAACCTTTGTAAATAAAGTATGATCGGAGTGATCCTGATTGTATCCTTGGGACTTGACAAATGTAATGAATCTGTCAAACCATGCTCTGGGTGACTGTTTTAGACCATATAAGGATTTCTGGAGTTTACAAACCTACTAACCAAACTGTGCTTCAAAGCCAGGCGGGGGGCTCATTTAGACCTCCTCTACTAGGTCTCCGTTCAGGAAAGCATTCTTCATTTAGCTGATATAGAGGCCAATCTTTGTTTACAGCAACGGATAGGACTCTGACAGTATTTAACTTAGCAATAGGAGAAAAAGTTTTTGAATAATCAACATCATAGGCTTGAGGAAACCCTTTTGCAACTAACGTTGTCTTATGTCTGTCAAATGTTCCATCTGCTTTGTATTTGAGAGTGAACACCCATTTGCATTCTACAAGCTTGTGTCCATTAGGTAGAGCACAAATCTCCCAAATGTTATTCTTTTCAAGAGCTTTCATTTCTTCCATGACAACATTCTTGTATTCAGGACACTCTAAAGGAGTGAAAGCTCTGAACTGTGGTGAGAGATTCTTGTATGACACATAATTACATATGGAGTGCTTTGTGCAGAACCTTGTACCTTTCCTCGGTGCAATAGGAAGATCAAGAAATGGATCATACCTGCTACTATTTCCATAATGGTTTGACTTAGTTTTTTTTTCAGTATGTTCAACAACAACCTCGTTCTCAATAATCCTATCCTCTCTGTCTACAATGGCCTCATCAATACCGCGCTACTCACTTATATCTTTCATAATACTTGTCTCGTACCTATCATTCCTACTCATTCTATTATTACTATGTGAGTTAATTGAATCAGTCATAATCTCTTATTGGTTCAAAATCCTGGATTGAAACCATCTGAACAACAGGAAACTCAACTTCCTTTATGAGATTCATTCTATAGTAGGTTTTCCAAGGAACTTGATTTGTTGGTAGGACTGTACTGTGAGAGATAGGGTCAGGTAAGGTAACCACAGTAGGATAAGAAGACTCTAAGGGAAGCATATAGTTAGACTTCAATCACATTCTCCCCCTGAAGTAGGCTAACGGGAAAAAAATGACGATCTTCAATAAAGGTGGCATCCATGGTAACAAAGTACTTATGTGAAGATGGATGGAAGCATTTATAGCCTCGTTGGTGTAGAGGATATCCAACAAACAGCAAGCCTGAGCCCTAGGGGTAAATTTAGTTTGGTTAGGACCATGGCTACGGACATAGGTAGTGCAGCCGAACACTCGAAGGGGAACATCAGGGATGAGAAGAGTGGAGGGATAGGATTCTTTGAGGCAATCTAACGGTGTCTAGAAGTGAAGGACATGGGAAGGCATGCGGTTGATGAGATGAGCGGCAATGAGAATGGTATCACCCCAAAGATAGGAAGGAAGAGAAGTGGGCAACATAAGGAAACGAGCAACTTCCAAAAGGTGACGATATTTTCATTCGACAACCCCATTTTGTTGAGGGTGTAAACACAAGAATTTTGGTGAACAGTTTCTTTAGAGGATAAGAACTCGTTAAGAGAGTGGTTTTGAAACTCACGACCACTAGAGGGACATCATCATCAAACAAGTAAAGATCTCTATTGTGTCAGGCAGTGCCAATCATACTCCTCGAGCTCAAGTCCTGAAAAGAAATAGAATCAGGTAAGAATGTTGTTTTACAGTTTAGTTCATGAGTAATCTTGCTAATCGACAGAAGATTATATGAAATTCACGACACATGCAACCATTGTGTAATGAGAACCCGTCAAAAAGAGAAATTTGCCCTTTTCTGGCAATGGAAGCCAAGGAGCCATCATATATTCTTATTTTCTCATTCCCAGCACACGAAATGTAGGACACAAAGTGTTTAGAGGAATCGGTTAAATGTTCTGTGACACCAGAGTCTAGGATCTGAGGATTCTTACCATCAATACTAATTAGACTAAATGTCCCACTAAATCACACTGACTAAATCTCTATGTGATTTCCATCAATGGTTGTGTTGTTTAGGGTTTGTTCAATGTCCCGCTTTGATACCATATTGAAAGGGAGACAAACAAACACACAACTTTACGTGAAAACCCAAGTATCGGAAGAAAAATCACGATATTTTTCTTCTTATTATTTTATGATAAATGATACAATAGGTACGAGGGAGAATAAGTAAAATTAGATTCTTATCATTATGAACAGATTCTTTATCAACAAAATCAGAAAAATATGCAAAAGAATCGGACAATGGCTAACTTTACTGAGAGAATAGAAAAATGTCTGCAAAACTGAGGGAAACCACATGGGAAAAACCTTCAACGACTATCCACAAAAAAATACGTAGGCTAGAAAACAATCTCAAATTGACAGCACATCGGGGACAAAAAGTGAATAAGATGAGCGGAGTAAAGAAGGTAAAATGTGCGAGGAAGAGCCAATTTTGGAAGAAAGAAAAAAAATTAAAGAAAAAGAATATAAAGCTATTTTCAAAATGGGAAGGGCACAGTCTAATTTGGAAGAAAAATCAAGAAACCCCTACAAACTTACATTTGGGTACTTAGGCGAAATTGTTGACAAAGCAGAGGTGATAGGAAATAAGCACCGGATGTAAAAGGAAGATCACGCGGTTGAAGAAGAGAATAGAGCAGAAATTAACCTTGACCACAATTACCAAAATAGACAACAAGAGAATCAACACCTATTGTAATTGGTATGAAAAAAATGTGCAAGATTTACCAACAATCGTTCAAGTACAACCAAAGATCAAGGTTATATCAAAATCATTTTCCTCCCACCTATGGTAATTGGTATGAAAAAAATGTGCAAGATTTACCAACAATCGTTCAAGTACAACCAAAGATCAAGGTTATATCAAAATCATTTTCCTCCCTTCCTTGAGTAGTCTGCATATATTTTAACAACAAAGGATTGTTTAAACAACATAATTCCTGGATTAATTCATGGTGATTTTGCTAAAAGATTCATTCCATTTCAAAAGGCAAATCTTGACTCGACTTGTGAAATTTGATTGTTGTTGATATTAGTTTTTCAGAGTTGTTTTCGTTCAAGTGGTTTATCTTTTTATTTTTACCTTCATTTTCATTTTAAAACTCGATGATGAGTTTTTTAGAGGGATAAAATGATGTAGTAAGAATTTGGGTATTATGGTCAAATCCTTACTCTATTAGGATTAGGATTAATTTCTTTTATTAATTAGGCTTAAGATTAGTTTCTTATTCGGATTAGGATTAGTTTCTTTTATTAATTAGGATTAGGATTAGTTTGATTTTCAATTATAAATAGAGTATTTGTTTTCTTGTATTTACAATTTTTAAACATTAATAAAATTTTCATCAATTTTAGAATCATCAATAAGGTTGAAATTGATACTAAGAACAAATTAACAAATTAATTATTGAGACACTATTTGGTAACTATTTTGCTTTTTGTTTTTTCGTTTTTGAAATTTAAAGCCAAGCACCTTTCAACCTCTAAGGGGCCAATTGGGGCACCAACTATAAGTTGGGGTGGTGAGTTATTATAGCTCACCCCTTTTTTGGCCACCAAATATAATAATGGAGTGTGCAACTATTTATAACCAACAATGAAGTAGTAAACACTATTCCAAAATCCTCTTAGCTACAATATTTACTATTTTCACTCATTCTTTTTTGCTCTTTGCTAGAGTATTTACTATTCCTCATCCAAAGAAAAATAATTAGCACCCGAAACACAAATTATTTTAACCTAAACTAAAATAGTTTGCATCCCAAACATTATTATAACTCATCGATTATAATAAACACTAACTATAATAATCAACTTATTTTGCTTTGTTATTTACTTTTTACCGACATTTTCAACTCTTTTTACTTATGCTTTGTTTGGTGTATGGATTTGGATAGAAATTATTTTAATTAAATTTCAGGATTTTAAGAAAATGAAACGATTTCAAATTCTTATTGGCATTTGAGGCCAAAAAGATTTTAAATGATTGAAATTAACATTTCTTGTCTGAATGCTCACTAGAAATGAAAGGAAAGTATAACGATTTGCTTTTAGGTCCTCATAATTTTATTTATTTATTTTAGTTTGTTCATTTTCCAAACACAAGGAAGTTTCTTTCATCTTTTTCGAACCCAAAACTCTATTTTTTCATGAAAAAAACATATAAAGAAACAAAAAACAAATCTTTTTGAAAAGATAAAAAAACCATGACAAGAAATTGAGAGAAGATAAACTTAAATACTCCTACTTCTACATTTCTTGATTTGTTTTCTAATTTCTATTAATGTTTTAAAACTGGGACAATTTTTAAAACTAAAAAAAAACATTTTTTTTTTTATTTTTTGAAATTTAGCTAAGAATTCAATTCTTATACTTATGAAAGACACAAATTATCTTAGGAAATTCAGAGAAAAACTAATTTTCAAAATAAAAATAAAACGGTTACTGAACATGGCCTTAGTTGTCAGTTCTTGCTTGATAACAACTAAATATTTGTAGGTTGTGGGTTATGAGGAGGATTTGTCAGGAAGGCAAATGCTCTTGGACAAAGTTCGAACCCGGAGTAGCATGACTTGAAGTTACATCCTGCCCTTGTAAATACGACGCCTTAAAGATAGTGGTAGGACTTGGTGCTGGATTGTGAAGGTTTGATTAGAACTCATTTTCCTTAGAGTTTAATGTTATTCAAGCACTATTTTCATTTAGAAGTTGTAGAAAACGTTTGAACCTTGATTGATTGTATAGTCAACCAAAATGATTTAAAAGAAAAGTTATTGAAGATGGGGATTACATGGGGATTTTATCTATTGTCTTGTGATTCAATGACATCTTGGCACTTGTAAGCTGGAAATTAACCAATATTAGTTCGATTTGCAAGTAACACAGAAGATTTTTGGAGATTTTTGACTAGCTGATGGATGGATATTATACTGCCCCCTAAAAAAAGGTAATACCTACTAATTTTCTTGAATCTCCCATTTTCCAATTACGATAAGCGTGGAAACTTTTTATTTTGTTATTTACTACAAATTCAAGTATTTAAGCCCTACACTATAAATTCAAAAGTAAAATAGGAAAAGTGAAAGATGAGGAAATTGATGCTGATATATTATTTATTTTATTTATTTTTAATCATATGATTGTATCTATTGAACTAACATTGATAAATACTCCGTTGACTATATAAGTAATCAATTGTAATATAAGCTTGATGAGAAGGTTAATAGCATGTACACTTGCTATTCAAAGTTTTAAAGATAATGACAAAGCGAGCTTAGTTTGGCAATGGTTGGCATGCAATTTCACCCTTAGATTTGATTTCCCATTTCTTTGTTCAAAATTTCCTTAAATATAACATTTGGTAGATAGTTTTTAATTTCTTTGTGAAAATGACAATTAAATGTCTATGGGTATTTAGATTGCATGTTTTTTATGACAGATTGTGAATATCTATTTGGTAGCTAATTATAAGATTTAAATATGCATGTTGGATATGGAAGAAAATTAAATGTCAAGCCAATAATTTTAATTAATTTAATGATAAACAATGTTCTGTATGTTAAAAAATTAATAATAAAGTGAACGAATAAAAAACTCTGATCTTGCAAGTCCAAAATACAATGTTGAATAACAATACCCAATACTGAATATTATTAGTCTTACGAACACATTCCATAACATACAACAATTAATGGAGAAACAACATCAAATTCACTAAAGCAAACACACACAAACCCTGAAGGGAAAGTGGTTCCTTTTTTTGTTCTTTCTTTTTGTGGGGGGGAGGGGAAAGAAGTAGCATTATTCAAATCTTGTCACTACTATATGAAAACCCTTGAATGAAAGGCCATCGGGAGAGTGAAATTTAACACCAACTCCTTTTGATTTATGCTCCTCACATTGCCCTGACAGCTTGAAACCTAGGTTCCTTTGGGAGGAACTTCTGCTCAGCATAAACTGACATATAGTCTCCAAACACAAACTTGGGATATCCTTCTTCCACTTCCTGGTTTGCTTTATCCACCAGCTGTGCTGCAGGAGCTATGGTGGCTTCCATTGATGGATTGTAAAATGAAGCAATTGATCTCCTGTTCCCATTCGGTGAGGCTAAAACCCGATGCCAAACACTCTTGTATCTCCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTGGGAAATGGCTGCACATCAATCCACTGCCCATCTTTCAAGATTTGAAGGCCTCCCACCTGATCGTCTTGGAAGAGCAAGATGACACCGCCGGCATCGGTGTGGGCACGGAGGCCATTCACTAGCTCTGGGTGTGGACATGGTGGGTAATGGCTGATTTTGGTTCCAAAGAAGGCCTTTTCCAGCCCTTCGCCACCATTGAAGGCAGCCTTTATGTATCCTTCAGGTAAACCTAAGTTCTCATCCATTACTGCCATCACCTTTTCAGCTAGTTTTCTCAGCTCCGATCTGTACTCTCTCATGGTTTCCCTGCCATAATTGGATTCATATACATATATTATTTCCTGTTTTTAAGAAGAATCTGATTTCAATGCCCTATTTTCACTGAATTTTCATGAAAGTTGAATGCTTACTTAAATCCAGGAAGGTTGGAGGGCCATTCGTTGTCATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCACCACTCTTGTTCTCAAGCAAATCATTCAGGAGCTTCACAGGTTTTGAACTCTTGAAACTTTCTTCTCTTTCCACCTTGTAGCACTCTGAAGAAACCTTCTTCACCCTCTCTAGGAGCTCTTCAGGAATCCCATGGTTCACCAGCT

mRNA sequence

ATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTCATCGGGTTCGATCATGTTTAGAGGATGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAGAGAAAGATTGTCTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCAGGCTTATGCACTGTCAGCCAATTTCCTACTCAAGCTGCCCCAATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTACCATTCCGAGAGACCAATCAGCTGGAACTAACAGTAGCTTTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAAAAAGCGCAAGTTCTTTGACGAAGCCATACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATTGAGGACTTATTGGAGCAGACAACTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGATAAAAGTATTTTCCCGCCAGACTGTTCGCTTGTTGGTCAAGACCATTCAGAAACTTCTCCAATTGGTGCTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGATGTCGGCAATTCTACTACTGAAGATGGGACTGTGGGCATATGTGATGGCTTTAGTGAAACACAAACGGAGTCTCAGGTTGTGGGTTATGAGGAGGATTTGTCAGGAAGGCAAATGCTCTTGGACAAAGTTCGAACCCGGAGTAGCATGACTTGA

Coding sequence (CDS)

ATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTCATCGGGTTCGATCATGTTTAGAGGATGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAGAGAAAGATTGTCTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCAGGCTTATGCACTGTCAGCCAATTTCCTACTCAAGCTGCCCCAATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTACCATTCCGAGAGACCAATCAGCTGGAACTAACAGTAGCTTTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAAAAAGCGCAAGTTCTTTGACGAAGCCATACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATTGAGGACTTATTGGAGCAGACAACTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGATAAAAGTATTTTCCCGCCAGACTGTTCGCTTGTTGGTCAAGACCATTCAGAAACTTCTCCAATTGGTGCTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGATGTCGGCAATTCTACTACTGAAGATGGGACTGTGGGCATATGTGATGGCTTTAGTGAAACACAAACGGAGTCTCAGGTTGTGGGTTATGAGGAGGATTTGTCAGGAAGGCAAATGCTCTTGGACAAAGTTCGAACCCGGAGTAGCATGACTTGA

Protein sequence

MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPIHSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGRQMLLDKVRTRSSMT

Homology

[Close]

BLAST of CsaV3_4G028030.1 vs. NCBI nr
Match: XP_016899871.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_016899872.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 701.4 bits (1809), Expect = 1.6e-198
Identity = 347/368 (94.29%), Postives = 353/368 (95.92%), Query Frame = 0


Query: 1   MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPG 60
           MKQKVHFTVECHGGIPRSTDVHSTYVSSH VRSCLEDGCLW TNGHILYSPLPCCVPL G
Sbjct: 603 MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWATNGHILYSPLPCCVPLSG 662

Query: 61  FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQ 120
           FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG Q
Sbjct: 663 FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGIQ 722

Query: 121 CITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPI 180
           CITAEWIYECVRQ KIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANES+SQFPI
Sbjct: 723 CITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESISQFPI 782

Query: 181 HSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQ 240
           HSTIPRDQSAGTN+S I A E+ISSTKKKRK FDEAIQKR LF+GNSSTQSDCNLNSTKQ
Sbjct: 783 HSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSSTQSDCNLNSTKQ 842

Query: 241 TTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 300
           TTSKSSVVT+HVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS
Sbjct: 843 TTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 902

Query: 301 PIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGRQMLLDK 360
            IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQVVGYEEDLSGRQMLLDK
Sbjct: 903 QIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDGFSETQTESQVVGYEEDLSGRQMLLDK 962

Query: 361 VRTRSSMT 369
           VRTRSSMT
Sbjct: 963 VRTRSSMT 970

[Close]

BLAST of CsaV3_4G028030.1 vs. NCBI nr
Match: XP_016899869.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_016899870.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 654.4 bits (1687), Expect = 2.2e-184
Identity = 322/344 (93.60%), Postives = 329/344 (95.64%), Query Frame = 0


Query: 1   MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPG 60
           MKQKVHFTVECHGGIPRSTDVHSTYVSSH VRSCLEDGCLW TNGHILYSPLPCCVPL G
Sbjct: 603 MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWATNGHILYSPLPCCVPLSG 662

Query: 61  FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQ 120
           FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG Q
Sbjct: 663 FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGIQ 722

Query: 121 CITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPI 180
           CITAEWIYECVRQ KIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANES+SQFPI
Sbjct: 723 CITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESISQFPI 782

Query: 181 HSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQ 240
           HSTIPRDQSAGTN+S I A E+ISSTKKKRK FDEAIQKR LF+GNSSTQSDCNLNSTKQ
Sbjct: 783 HSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSSTQSDCNLNSTKQ 842

Query: 241 TTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 300
           TTSKSSVVT+HVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS
Sbjct: 843 TTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 902

Query: 301 PIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQV 345
            IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ+
Sbjct: 903 QIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDGFSETQTESQL 946

[Close]

BLAST of CsaV3_4G028030.1 vs. NCBI nr
Match: XP_008444202.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo])

HSP 1 Score: 654.4 bits (1687), Expect = 2.2e-184
Identity = 322/344 (93.60%), Postives = 329/344 (95.64%), Query Frame = 0


Query: 1   MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPG 60
           MKQKVHFTVECHGGIPRSTDVHSTYVSSH VRSCLEDGCLW TNGHILYSPLPCCVPL G
Sbjct: 551 MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWATNGHILYSPLPCCVPLSG 610

Query: 61  FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQ 120
           FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG Q
Sbjct: 611 FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGIQ 670

Query: 121 CITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPI 180
           CITAEWIYECVRQ KIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANES+SQFPI
Sbjct: 671 CITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESISQFPI 730

Query: 181 HSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQ 240
           HSTIPRDQSAGTN+S I A E+ISSTKKKRK FDEAIQKR LF+GNSSTQSDCNLNSTKQ
Sbjct: 731 HSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSSTQSDCNLNSTKQ 790

Query: 241 TTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 300
           TTSKSSVVT+HVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS
Sbjct: 791 TTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 850

Query: 301 PIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQV 345
            IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ+
Sbjct: 851 QIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDGFSETQTESQL 894

[Close]

BLAST of CsaV3_4G028030.1 vs. NCBI nr
Match: XP_022936988.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata])

HSP 1 Score: 618.2 bits (1593), Expect = 1.8e-173
Identity = 304/366 (83.06%), Postives = 322/366 (87.98%), Query Frame = 0


Query: 2   KQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPGF 61
           KQKVHFTV CHG IPRSTDVH+TYVSSH VRSCLEDGCL DTN HILYSPLPCCVPLPGF
Sbjct: 604 KQKVHFTVGCHGVIPRSTDVHTTYVSSHWVRSCLEDGCLSDTNEHILYSPLPCCVPLPGF 663

Query: 62  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQC 121
           E IRFCVSQY+DKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKF+DG KYEAACKWG   
Sbjct: 664 ERIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHS 723

Query: 122 ITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPIH 181
           +TAEWIYECVRQ K+VSLDLYRPKEVTAQDR AGLCTVSQFPTQA  MIA E  SQFP H
Sbjct: 724 VTAEWIYECVRQSKLVSLDLYRPKEVTAQDREAGLCTVSQFPTQAGQMIAGEGESQFPTH 783

Query: 182 STIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQT 241
           S I RDQSAGTNSS +G  E+IS T KKRKF DE IQKR +FVGNS T  DCNLNST++T
Sbjct: 784 SAILRDQSAGTNSSSVGEVEQISFTNKKRKFLDEPIQKRPIFVGNSLTHFDCNLNSTRET 843

Query: 242 TSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETSP 301
           TSKSSVVTSHVPDVA+AIEDLLEQT+KI DQKSPGKTGCDKSIFPPDCS++GQDHSE  P
Sbjct: 844 TSKSSVVTSHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPP 903

Query: 302 IGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGRQMLLDKV 361
           +G  SNQW KRAERKEDV + TT DG  G  DGFSETQTESQVVGYEEDLSGRQML+D+V
Sbjct: 904 VGGSSNQWLKRAERKEDVSDPTTGDGCAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRV 963

Query: 362 RTRSSM 368
           RTRSSM
Sbjct: 964 RTRSSM 969

[Close]

BLAST of CsaV3_4G028030.1 vs. NCBI nr
Match: XP_022936987.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 618.2 bits (1593), Expect = 1.8e-173
Identity = 304/366 (83.06%), Postives = 322/366 (87.98%), Query Frame = 0


Query: 2   KQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPGF 61
           KQKVHFTV CHG IPRSTDVH+TYVSSH VRSCLEDGCL DTN HILYSPLPCCVPLPGF
Sbjct: 607 KQKVHFTVGCHGVIPRSTDVHTTYVSSHWVRSCLEDGCLSDTNEHILYSPLPCCVPLPGF 666

Query: 62  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQC 121
           E IRFCVSQY+DKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKF+DG KYEAACKWG   
Sbjct: 667 ERIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHS 726

Query: 122 ITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPIH 181
           +TAEWIYECVRQ K+VSLDLYRPKEVTAQDR AGLCTVSQFPTQA  MIA E  SQFP H
Sbjct: 727 VTAEWIYECVRQSKLVSLDLYRPKEVTAQDREAGLCTVSQFPTQAGQMIAGEGESQFPTH 786

Query: 182 STIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQT 241
           S I RDQSAGTNSS +G  E+IS T KKRKF DE IQKR +FVGNS T  DCNLNST++T
Sbjct: 787 SAILRDQSAGTNSSSVGEVEQISFTNKKRKFLDEPIQKRPIFVGNSLTHFDCNLNSTRET 846

Query: 242 TSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETSP 301
           TSKSSVVTSHVPDVA+AIEDLLEQT+KI DQKSPGKTGCDKSIFPPDCS++GQDHSE  P
Sbjct: 847 TSKSSVVTSHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPP 906

Query: 302 IGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGRQMLLDKV 361
           +G  SNQW KRAERKEDV + TT DG  G  DGFSETQTESQVVGYEEDLSGRQML+D+V
Sbjct: 907 VGGSSNQWLKRAERKEDVSDPTTGDGCAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRV 966

Query: 362 RTRSSM 368
           RTRSSM
Sbjct: 967 RTRSSM 972

[Close]

BLAST of CsaV3_4G028030.1 vs. TAIR10
Match: AT1G77320.1 (transcription coactivators)

HSP 1 Score: 295.8 bits (756), Expect = 3.6e-80
Identity = 177/376 (47.07%), Postives = 225/376 (59.84%), Query Frame = 0


Query: 6   HFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIR 65
           HFT+ECHGG   +    + YVSSH VR+CL+ GCL   + HILYSPLPC  PLPGFE++ 
Sbjct: 609 HFTIECHGGFQSTETTQTIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLC 668

Query: 66  FCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAE 125
            C SQ+++K+  LLRNL  VLGA FVE+LT+KVTHLIC F  G KY  A KWG   +T +
Sbjct: 669 ICSSQHNEKNVELLRNLSVVLGADFVERLTRKVTHLICNFAKGDKYVRASKWGIISVTPD 728

Query: 126 WIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPIHSTIP 185
           W+YECVRQ ++V  D + P+E+T QDR AG    SQF TQ  PM + +S+S    HS   
Sbjct: 729 WLYECVRQNQVVCTDNFHPRELTTQDREAG----SQFHTQFVPMASRDSMSLPVSHSEDR 788

Query: 186 RDQSAGTNSSFIGAAE---RISSTKKKRKFFDEAIQKRSLFVGNSS---TQSDCNLNSTK 245
               +    S  G  E   R+    K++ F   + + + L  G  S      +   N  +
Sbjct: 789 EKIQSFAGKSGCGKGEVYNRLGEIGKEQTF--PSKKAKLLRDGQESDVFPVRELPSNCDR 848

Query: 246 QTTSKSSVVTSH-------VPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLV 305
            + S   +VT +       VPDVA  IEDLLEQT+KIQDQKSPG+   +K+ F       
Sbjct: 849 PSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSKIQDQKSPGRI-LEKTHFSTSEQYN 908

Query: 306 GQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLS 365
             +HS T     LS  W  R  + +D+G S   D T      FSETQTESQVVGYEEDLS
Sbjct: 909 TGNHSVT----GLSRHWINRVHKNDDMG-SPPGDATTDTYGNFSETQTESQVVGYEEDLS 968

Query: 366 GRQMLLDKVRTRSSMT 369
           GRQML+D+VRTRSS+T
Sbjct: 969 GRQMLIDRVRTRSSLT 972

[Close]

BLAST of CsaV3_4G028030.1 vs. TAIR10
Match: AT1G67180.1 (zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 62  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQC 121
           EN+   VS Y   DR  L  L    GA +V  +++ +THL+C   +G KY+ A K+G   
Sbjct: 2   ENVVATVSGYHGSDRFKLIKLISHSGASYVGAMSRSITHLVCWKFEGKKYDLAKKFGTVV 61

Query: 122 ITAEWIYECVRQRKIVS 139
           +   W+ ECV++ + VS
Sbjct: 62  VNHRWVEECVKEGRRVS 78

[Close]

BLAST of CsaV3_4G028030.1 vs. TAIR10
Match: AT4G02110.1 (transcription coactivators)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-07
Identity = 29/98 (29.59%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 42  DTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL-TKKVTH 101
           D    ILY PL     +PG + +  C++ Y   DR  +  +  ++G +F + L   +VTH
Sbjct: 90  DNANSILYRPLRDLNGIPGSKALVVCLTGYQGHDREDIMRMVELMGGQFSKPLVANRVTH 149

Query: 102 LICKFTDGTKYEAACKWGK-QCITAEWIYECVRQRKIV 138
           LIC   +G KYE A +  + + +   W+ +C++  K++
Sbjct: 150 LICYKFEGEKYELAKRIKRIKLVNHRWLEDCLKNWKLL 187

[Close]

BLAST of CsaV3_4G028030.1 vs. TAIR10
Match: AT1G80420.1 (BRCT domain-containing DNA repair protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 47/210 (22.38%), Postives = 85/210 (40.48%), Query Frame = 0


Query: 62  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQC 121
           E + F +S + + +R  LR+    +GA +        T LIC F +  K+      G   
Sbjct: 64  EGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQVETNGGTI 123

Query: 122 ITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPIH 181
           I+ EWI EC  Q+K+V ++ Y           AG         Q A     E +S+ P  
Sbjct: 124 ISKEWITECYAQKKLVDIEQYL--------MHAGKPWRKSSSPQDANREKREHLSKKPEK 183

Query: 182 STIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQT 241
               + ++ GT S+   +  R +    K  FF   ++K   +  +  +Q+   L S ++ 
Sbjct: 184 QVEKKTETRGTPST--SSKNRSACNLVKEPFFVTEVKK---WARDDLSQTISWLESQEEK 243

Query: 242 TSKSSVVTSHVPDVASAIEDLLEQTTKIQD 272
                +       V + ++D ++   + QD
Sbjct: 244 PEPGEIKRIAAEGVLTCLQDAIDSLEQKQD 260

[Close]

BLAST of CsaV3_4G028030.1 vs. Swiss-Prot
Match: sp|Q800K6|TOB1A_XENLA (DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis OX=8355 GN=topbp1-A PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-10
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 0


Query: 34  CLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKF 93
           C+E   L D + + L++P+P    L G   +R C   VSQ+   +R  L  L  +LGAK 
Sbjct: 607 CIEQEKLLDPHSNALFTPVPF---LEGSTPLRECVLSVSQFMGAERDSLVYLAGLLGAKV 666

Query: 94  VEKLTKKV---------THLICKFTDGTKYEAACKWGKQCITAEWIYECVRQRKIVSLDL 153
            E   +K          THL+ K  +G+KYEAA KW    +T  W+ +C R  +    D 
Sbjct: 667 QEFFVRKANPKKGMFASTHLVLKDAEGSKYEAAKKWNLPAVTMNWLLQCARTGRKADEDS 726

[Close]

BLAST of CsaV3_4G028030.1 vs. Swiss-Prot
Match: sp|Q7ZZY3|TOB1B_XENLA (DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis OX=8355 GN=topbp1-B PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.5e-10
Identity = 43/131 (32.82%), Postives = 62/131 (47.33%), Query Frame = 0


Query: 34  CLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKF 93
           C+E   L D + + L++P+P    L G   +R C   VSQ+   +R  L  L  +LGAK 
Sbjct: 607 CIEQEKLLDPHSNALFTPVPF---LEGSTPLRECVLSVSQFMGAERDSLVYLAGLLGAKV 666

Query: 94  VEKLTKKV---------THLICKFTDGTKYEAACKWGKQCITAEWIYECVRQRKIVSLDL 153
            E   +K          +HL  K  +G+KYEAA KW    +T  W+ +C R  K    D 
Sbjct: 667 QEFFVRKANPKKGMFARSHLDLKDAEGSKYEAAKKWNLPAVTMNWLLQCARTGKKADEDS 726

[Close]

BLAST of CsaV3_4G028030.1 vs. Swiss-Prot
Match: sp|Q92547|TOPB1_HUMAN (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=3)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-07
Identity = 36/130 (27.69%), Postives = 58/130 (44.62%), Query Frame = 0


Query: 33  SCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVE 92
           +C++   L+D   + L++P+P    +   E+     SQ    ++  L  L  +LGA   E
Sbjct: 618 TCIDYQTLFDPKSNPLFTPVPVMTGMTPLEDCVISFSQCAGAEKESLTFLANLLGASVQE 677

Query: 93  KLTKK---------VTHLICKFTDGTKYEAACKWGKQCITAEWIYECVRQRKIVSLDLYR 152
              +K          THLI K   G+KYEAA KW    +T  W+ E  R  K      + 
Sbjct: 678 YFVRKSNAKKGMFASTHLILKERGGSKYEAAKKWNLPAVTIAWLLETARTGKRADESHFL 737

Query: 153 PKEVTAQDRA 154
            +  T ++R+
Sbjct: 738 IENSTKEERS 747

[Close]

BLAST of CsaV3_4G028030.1 vs. Swiss-Prot
Match: sp|O04251|Y4211_ARATH (BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g02110 PE=4 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-06
Identity = 29/98 (29.59%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 42  DTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL-TKKVTH 101
           D    ILY PL     +PG + +  C++ Y   DR  +  +  ++G +F + L   +VTH
Sbjct: 90  DNANSILYRPLRDLNGIPGSKALVVCLTGYQGHDREDIMRMVELMGGQFSKPLVANRVTH 149

Query: 102 LICKFTDGTKYEAACKWGK-QCITAEWIYECVRQRKIV 138
           LIC   +G KYE A +  + + +   W+ +C++  K++
Sbjct: 150 LICYKFEGEKYELAKRIKRIKLVNHRWLEDCLKNWKLL 187

[Close]

BLAST of CsaV3_4G028030.1 vs. Swiss-Prot
Match: sp|Q6NZQ4|PAXI1_MOUSE (PAX-interacting protein 1 OS=Mus musculus OX=10090 GN=Paxip1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.8e-05
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 68  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWI 127
           V+ + D DR  L+ + ++ GAK+   L +  T LICK   G KYE A +W   C+ A+W+
Sbjct: 700 VTGFVDNDRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQWL 759

Query: 128 -------YECVRQ 134
                  +E +RQ
Sbjct: 760 GDILLGNFEALRQ 772

[Close]

BLAST of CsaV3_4G028030.1 vs. TrEMBL
Match: tr|A0A1S4DV59|A0A1S4DV59_CUCME (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 701.4 bits (1809), Expect = 1.1e-198
Identity = 347/368 (94.29%), Postives = 353/368 (95.92%), Query Frame = 0


Query: 1   MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPG 60
           MKQKVHFTVECHGGIPRSTDVHSTYVSSH VRSCLEDGCLW TNGHILYSPLPCCVPL G
Sbjct: 603 MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWATNGHILYSPLPCCVPLSG 662

Query: 61  FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQ 120
           FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG Q
Sbjct: 663 FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGIQ 722

Query: 121 CITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPI 180
           CITAEWIYECVRQ KIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANES+SQFPI
Sbjct: 723 CITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESISQFPI 782

Query: 181 HSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQ 240
           HSTIPRDQSAGTN+S I A E+ISSTKKKRK FDEAIQKR LF+GNSSTQSDCNLNSTKQ
Sbjct: 783 HSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSSTQSDCNLNSTKQ 842

Query: 241 TTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 300
           TTSKSSVVT+HVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS
Sbjct: 843 TTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 902

Query: 301 PIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGRQMLLDK 360
            IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQVVGYEEDLSGRQMLLDK
Sbjct: 903 QIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDGFSETQTESQVVGYEEDLSGRQMLLDK 962

Query: 361 VRTRSSMT 369
           VRTRSSMT
Sbjct: 963 VRTRSSMT 970

[Close]

BLAST of CsaV3_4G028030.1 vs. TrEMBL
Match: tr|A0A1S4DV57|A0A1S4DV57_CUCME (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 1.5e-184
Identity = 322/344 (93.60%), Postives = 329/344 (95.64%), Query Frame = 0


Query: 1   MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPG 60
           MKQKVHFTVECHGGIPRSTDVHSTYVSSH VRSCLEDGCLW TNGHILYSPLPCCVPL G
Sbjct: 603 MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWATNGHILYSPLPCCVPLSG 662

Query: 61  FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQ 120
           FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG Q
Sbjct: 663 FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGIQ 722

Query: 121 CITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPI 180
           CITAEWIYECVRQ KIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANES+SQFPI
Sbjct: 723 CITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESISQFPI 782

Query: 181 HSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQ 240
           HSTIPRDQSAGTN+S I A E+ISSTKKKRK FDEAIQKR LF+GNSSTQSDCNLNSTKQ
Sbjct: 783 HSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSSTQSDCNLNSTKQ 842

Query: 241 TTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 300
           TTSKSSVVT+HVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS
Sbjct: 843 TTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 902

Query: 301 PIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQV 345
            IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ+
Sbjct: 903 QIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDGFSETQTESQL 946

[Close]

BLAST of CsaV3_4G028030.1 vs. TrEMBL
Match: tr|A0A1S3BAL1|A0A1S3BAL1_CUCME (DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 1.5e-184
Identity = 322/344 (93.60%), Postives = 329/344 (95.64%), Query Frame = 0


Query: 1   MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPG 60
           MKQKVHFTVECHGGIPRSTDVHSTYVSSH VRSCLEDGCLW TNGHILYSPLPCCVPL G
Sbjct: 551 MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWATNGHILYSPLPCCVPLSG 610

Query: 61  FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQ 120
           FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG Q
Sbjct: 611 FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGIQ 670

Query: 121 CITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPI 180
           CITAEWIYECVRQ KIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANES+SQFPI
Sbjct: 671 CITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESISQFPI 730

Query: 181 HSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQ 240
           HSTIPRDQSAGTN+S I A E+ISSTKKKRK FDEAIQKR LF+GNSSTQSDCNLNSTKQ
Sbjct: 731 HSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSSTQSDCNLNSTKQ 790

Query: 241 TTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 300
           TTSKSSVVT+HVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS
Sbjct: 791 TTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETS 850

Query: 301 PIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQV 345
            IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ+
Sbjct: 851 QIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDGFSETQTESQL 894

[Close]

BLAST of CsaV3_4G028030.1 vs. TrEMBL
Match: tr|A0A2P5F185|A0A2P5F185_9ROSA (BRCT domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_125930 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.1e-118
Identity = 225/373 (60.32%), Postives = 273/373 (73.19%), Query Frame = 0


Query: 1   MKQKVHFTVECHGGIPRSTDVH-STYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLP 60
           +KQ  +FTVECHG  P+S D   +TYVSSH +RSCLEDGCL D N HILYSPL C +P P
Sbjct: 331 LKQSANFTVECHGITPKSVDAPLTTYVSSHWIRSCLEDGCLLDVNAHILYSPLRCWIPFP 390

Query: 61  GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGK 120
           GFEN RFCVSQY++KDR+LLRNLCFVLGAK VEKLTKKVTHL+CKF  G KYEAACKWG 
Sbjct: 391 GFENFRFCVSQYEEKDRLLLRNLCFVLGAKLVEKLTKKVTHLLCKFASGPKYEAACKWGI 450

Query: 121 QCITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFP 180
             IT+EWIY CV+Q K+V LD + PKE+TAQD+  GLCT+SQFPTQAA M++ ++ SQF 
Sbjct: 451 HSITSEWIYACVKQNKLVPLDRFAPKEITAQDQEGGLCTMSQFPTQAARMMSGDNPSQFS 510

Query: 181 IHSTIPRDQSAG----TNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNL 240
             S   R    G       SF+G A+  S   KK +  ++  QK  L  G   + S  N 
Sbjct: 511 SQSEDVRTSLTGIVGCRTESFMGGAKHSSVVSKKARLLEDDDQKCLLSSGVRPSVSIRNA 570

Query: 241 NSTKQTTSKSSVVTSH-VPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQ 300
           NS +++ ++     SH VPDVA+AIEDLLEQT+KI DQKSPG+TGCD+S+F  +CS + Q
Sbjct: 571 NSIRESMAEDIDEASHVVPDVAAAIEDLLEQTSKIHDQKSPGRTGCDESLFSSNCSTLVQ 630

Query: 301 DHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGR 360
           DHS+T  I  LS  W  R  +K+DV NS + DG +G+ DGFSETQT+SQVVGYEEDLSGR
Sbjct: 631 DHSDTHSIVGLSKHWLNRTGKKDDVYNS-SGDGNMGMYDGFSETQTDSQVVGYEEDLSGR 690

Query: 361 QMLLDKVRTRSSM 368
           QML+D+VRTRSSM
Sbjct: 691 QMLIDRVRTRSSM 702

[Close]

BLAST of CsaV3_4G028030.1 vs. TrEMBL
Match: tr|A0A2P5CGJ4|A0A2P5CGJ4_PARAD (BRCT domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_154730 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.2e-115
Identity = 222/372 (59.68%), Postives = 268/372 (72.04%), Query Frame = 0


Query: 2   KQKVHFTVECHGGIPRSTDVH-STYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPG 61
           KQ  +FTVECHG  P+S D   +TYVSSH +RSCLEDGCL D N HILYSPLPC +P PG
Sbjct: 332 KQSANFTVECHGITPKSVDAPLTTYVSSHWIRSCLEDGCLLDVNAHILYSPLPCWIPFPG 391

Query: 62  FENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQ 121
           FEN RFCVSQY++KDR+LLRNLCFVLGAK VEKL+KKVTHL+CKF  G KYEAA KWG  
Sbjct: 392 FENFRFCVSQYEEKDRLLLRNLCFVLGAKLVEKLSKKVTHLLCKFASGPKYEAASKWGIH 451

Query: 122 CITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPI 181
            IT+EWIY CV+Q K+V LD + PKE+TAQD+ AGLCT+SQFPTQAA M++ ++ SQF  
Sbjct: 452 SITSEWIYACVKQNKLVPLDRFSPKEITAQDQEAGLCTMSQFPTQAARMMSGDNPSQFSS 511

Query: 182 HSTIPRDQSAG----TNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLN 241
            S   R    G       SF   A+  S   KK +  ++  QK  L  G   + S  N N
Sbjct: 512 QSEDIRTSLTGIVGCRTESFRSGAKHSSMVSKKARLLEDDDQKGLLSSGVHPSVSISNAN 571

Query: 242 STKQTTSKSSVVTSH-VPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQD 301
           S  ++ ++     SH VPDVA+AIEDLLEQT+KI DQKSPG+TGCD+S+F  + S + QD
Sbjct: 572 SIGESVAEDIDEASHVVPDVAAAIEDLLEQTSKIHDQKSPGRTGCDESLFSSNYSTLVQD 631

Query: 302 HSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGRQ 361
           HS+T  I  LS  W  R  +K+DV NS + DG +G+ DGFSETQT+SQVVGYEEDLSGRQ
Sbjct: 632 HSDTHSIIGLSKHWLNRTGKKDDVYNS-SGDGNMGMYDGFSETQTDSQVVGYEEDLSGRQ 691

Query: 362 MLLDKVRTRSSM 368
           ML+D+VRTR SM
Sbjct: 692 MLIDRVRTRGSM 702

The following BLAST results are available for this feature:

BLAST of CsaV3_4G028030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899871.1	1.6e-198	94.29	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_0...	[more]
XP_016899869.1	2.2e-184	93.60	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_0...	[more]
XP_008444202.1	2.2e-184	93.60	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo]	[more]
XP_022936988.1	1.8e-173	83.06	DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata]	[more]
XP_022936987.1	1.8e-173	83.06	DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata]	[more]

BLAST of CsaV3_4G028030.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77320.1	3.6e-80	47.07	transcription coactivators	[more]
AT1G67180.1	1.3e-08	36.36	zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing pro...	[more]
AT4G02110.1	2.4e-07	29.59	transcription coactivators	[more]
AT1G80420.1	1.9e-04	22.38	BRCT domain-containing DNA repair protein	[more]

BLAST of CsaV3_4G028030.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q800K6\|TOB1A_XENLA	1.3e-10	32.82	DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis OX=8355 GN=topbp1-A PE...	[more]
sp\|Q7ZZY3\|TOB1B_XENLA	8.5e-10	32.82	DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis OX=8355 GN=topbp1-B PE...	[more]
sp\|Q92547\|TOPB1_HUMAN	2.3e-07	27.69	DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=...	[more]
sp\|O04251\|Y4211_ARATH	4.4e-06	29.59	BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g...	[more]
sp\|Q6NZQ4\|PAXI1_MOUSE	4.8e-05	35.62	PAX-interacting protein 1 OS=Mus musculus OX=10090 GN=Paxip1 PE=1 SV=1	[more]

BLAST of CsaV3_4G028030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DV59\|A0A1S4DV59_CUCME	1.1e-198	94.29	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S4DV57\|A0A1S4DV57_CUCME	1.5e-184	93.60	DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3BAL1\|A0A1S3BAL1_CUCME	1.5e-184	93.60	DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2P5F185\|A0A2P5F185_9ROSA	1.1e-118	60.32	BRCT domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_125930...	[more]
tr\|A0A2P5CGJ4\|A0A2P5CGJ4_PARAD	3.2e-115	59.68	BRCT domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_15...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR036420	BRCT_dom_sf
IPR001357	BRCT_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G028030	CsaV3_4G028030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G028030.1	CsaV3_4G028030.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G028030.1.exon1	CsaV3_4G028030.1.exon1	exon
CsaV3_4G028030.1.exon2	CsaV3_4G028030.1.exon2	exon
CsaV3_4G028030.1.exon3	CsaV3_4G028030.1.exon3	exon
CsaV3_4G028030.1.exon4	CsaV3_4G028030.1.exon4	exon
CsaV3_4G028030.1.exon5	CsaV3_4G028030.1.exon5	exon
CsaV3_4G028030.1.exon6	CsaV3_4G028030.1.exon6	exon
CsaV3_4G028030.1.exon7	CsaV3_4G028030.1.exon7	exon
CsaV3_4G028030.1.exon8	CsaV3_4G028030.1.exon8	exon
CsaV3_4G028030.1.exon9	CsaV3_4G028030.1.exon9	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G028030.1.cds1	CsaV3_4G028030.1.cds1	CDS
CsaV3_4G028030.1.cds2	CsaV3_4G028030.1.cds2	CDS
CsaV3_4G028030.1.cds3	CsaV3_4G028030.1.cds3	CDS
CsaV3_4G028030.1.cds4	CsaV3_4G028030.1.cds4	CDS
CsaV3_4G028030.1.cds5	CsaV3_4G028030.1.cds5	CDS
CsaV3_4G028030.1.cds6	CsaV3_4G028030.1.cds6	CDS
CsaV3_4G028030.1.cds7	CsaV3_4G028030.1.cds7	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 58..134 e-value: 1.6E-12 score: 57.6
IPR001357	BRCT domain	PFAM	PF12738	PTCB-BRCT	coord: 64..126 e-value: 2.3E-22 score: 78.6
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 61..144 score: 15.676
IPR001357	BRCT domain	CDD	cd00027	BRCT	coord: 63..132 e-value: 2.77148E-9 score: 52.3239
IPR036420	BRCT domain superfamily	GENE3D	G3DSA:3.40.50.10190		coord: 59..151 e-value: 7.6E-23 score: 82.8
IPR036420	BRCT domain superfamily	SUPERFAMILY	SSF52113	BRCT domain	coord: 26..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 310..331
None	No IPR available	PANTHER	PTHR13561:SF20	DNA TOPOISOMERASE 2-BINDING PROTEIN 1	coord: 19..294
None	No IPR available	PANTHER	PTHR13561	DNA REPLICATION REGULATOR DPB11-RELATED	coord: 19..294