CsaV3_4G022020.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTCTTCTTCCTTCCAACAACCAATCCTTCTTTAATGTTCATAACCAAAGAGCTCAAACCGCTCTCCAATGGCCCTCTCTTTATCCCTACAACAACTCATTCGCTTCCCTCCCCATCCTCTCACCTCGCCTCTCTCTCCCGCTTCTTCCCATCTCCATGCCTTTCCTCTTTCGCTCCGTCCCCAGACTATGCCGTCAAGTTATCTTCCAGAACAAAGTGTTTCTCCATGTCCACTGAGGAGGACAAGTGGAGTGAATCTGATGCGTTTGTCTCCGATGTCGACGAAGGGGGTGATCTTGAGGATGACATTGATATTAGTGTTCGGGAAGACAGCCCTGTGGCCACTGCTGCTTCTGCGCAGAGGATTTCTTCTTCACCCAGTGATTATCTCTCGCTTGCGATTCCTGAGCAGGTTTATGAGGTCTGTTTCTTTTATGCATTTTTCTATTTTTAGTTCATTTTGGATGTGTTTGCTGCTACTTTGAATTGCGTTCGATTGAAGTGGGGAATTTGACTCTCAAACCGGAAATTTTCAATCAAGTTCAGATAGCCTGTTCAAATGCCTAACTAATTATTTGATTCTTGAGGGAAATTAGCTGAGCAGTGTTGTGTCTACCAATGCCTAATCGTCCTTAGTTGCTAACTGGGGTCTTTTTTCTTTTTGTTGATGTTGAAGAACGTTTAAACGGGTATTAATAGTAACTAACTGTAAGGTTCCTCGCATATGATGCTATGTTATAAAAGGTTTAGTATTAAAATTTTAAACGGTTGTAAGTGCTTCTAATCTTGTAGTAATTTAATGTTTCCTTCATTGATTTTTGAACATAAAAAACATTGGCACCATACAACTTTATTTTTTTTTTTATTTTTTTTATTTTAAAGGAGGACAGATTCAAACCTCTTATCTTTAGAGCGAAGAAATGATGTAAATTTATGACATTATATTGTTTTTTTTGGATGAAAATAACACCTTTAATTGGAAAAGAATAAAAGAATACAAGTACATACAAAAAAATACCAACCCAACAAAACACTTCATTAAAAAATAACCAAGTAAAATGTTGCCTATGCAATAATTATAGAAGCTCCTTGAAATCAAAGCTCAAGGGGACATGTGAAATCTAAGCAAACAAATCTCACTAAGCCCTCTCTCCCTACCCTGAAAAACTCGATCGTTTCTCTCCTCCAAATGTCCCAAATAACAGCGCACACCCCGGCGAGCCATAAGAAACCCCTTTGTCTCTTTGGTGACCATACGTACATTTGATTAGTTTAGAGAATAAATCATATAAAATAATCACTACACCCATCAAAGAAATAATACAAAGTAATTACTTTTGAGGGGTTCTACTTTTGCACTCTTCTTTGAAGTCACTATTTTTTTGGATATGAAAAAAGGTTCTGTTTGAAGGGCGGAACATTTAAATTTTTTTAGCTCAAGTTAAGACCTTGTGCTGTAATCCTTCCACCGGTTGGAGTTAATGGTTTGGAGGTAGGCTAGTTATAGTTTTGATTCCAAGATCAAATCTTTTCCTGTTAGAGATATATTTATGGGTTTCTTTCTTTGATAAAGGGAAGTTCTTACAGATGTTCATCTTTATTGACCACCTAGGTGTTAGAGGTTAAAGCTGATGGAACCGTATCCACCAGGAAGGTTAACAGACGGCAGCTGTTGAAGTCAAGTGGTGGGTAGATATTTCCAGAAAGTTCAGCTTCACATTTCAATGCTTAGTTTCTGGATTTATGCTGTTGAAAACTTTTAGCCTGCATTGACTTATGAATACTTTCTTTTTTGGAATATCAATTACTACTGGATGATCACTGTTGTTTTTTCTGGATTCACACTGATAGATAACCTGGGATGACAAATAATATTACGACCTACTTTTTGTCAAGAAAATATATCTTGTCGTTTCATTATTTTCCTCTTGCTGATATATGTATTTTCTAATTGTCAGGGCTTCGTCCTCGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTACATTAATTTTCATCTTTTTTAATTTGTGGTCTTCTTTTTATGTTGAAGAATTAGCATATGGGATAAACATATGAAATTAAGAAATTGGAGTCTATAAATAATACTCAGCAACAATTATATTTGTGGTTCACATCCCAGGTACGTGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCCATGCAGGATTGTGTCCTCATATTCGATCATAACCGGTATCCATCTGACTTGAAAATGGTGCCATGTTTATTTCTCATACAAAATTTCGATATTGCATTTCTTTTTGCATGATGGTGATCATCTTCAGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGGGTGCCAGCAATGCCATTTGAACTCGAGGTTAGTGATTCTTGTTAATATAATGCGTCTTTACATCATATAAATAGAGTTGGCAGATGAAAGCAAAATTATCTTACAAACTGTACTTCTGTAGCTCTCTACATCTAACAATAAGATGTTTCCTGGTTGGAATTTGGTCCTCGATAAGCTTACCCCTCAAAGCAAAGAAAAATTACCTCTAACTGCCCTTCAGCATTCTTATGTCATTCTATGTGTTGATTTTATGGAATAAATCTATATTTCATTTTAATAGAGATACAAGCCTATATATAACCATAGAGAAATACACTTAAGGAAATAATATCAAATAATATCTCCAGAATAATATCTCCAGAATAATATCTCCAGAATAATATCTCCTAAGAATAATCTAATTATATTAATACCCTCCCTCAAACTCAAGGTTGAAATCACAAACTTGAGTTTGCTAAGAACTAAGAAAAGAAACAATATATCTAGAATAGAATAAAAAACCCGAAGAACAAACACACAAAGAACTTCTAGGCTAAAACAAACCCACGAAGAGCGAAACGAAGAACTTCTGGGATAGAAACATAGATCCTCGTATAGAGATCTATAACAGAACCTAGGAAGAACGAAACAAGAACTCCGGGGGCAAAATGAAAGAGCAAAACTGAAGCAAAGTAGAATCAAATCATGATGAAAACGTGGTCTGAATTGGGCAGGAGCGTTTCGTCATCAGAATGGAACTGAACGAACTAAACTAAAGCAAGTCAGAATCAAATTGAACAGGAAATCTGGGTGAACAGAACGAAAACTGAAGAGAGCTGAGAGGTTGAGTAGATAGAGAGCTTTGCAGCGTTCTTCGCAAAAAGAGAAGATGCGTTTCATGACGGCGAGCTTCACAAATGGAGAGCGGACAAAGCCGAACCCGTGCGTCGTCGACTGTGAGTGGAGCGGAGCGGTGGATCATGGATCTGAACAAAGATTCACCCTCTTCAGGATCGGGAGTCTTCAATCGAAAGAGATTGTCTGGTACGAGTAAAGGGCGGCGGCGGCAGGTCGGTCTGATCTGGAACAGTATGATTCGAAGGCGAAAGATGAAATAAAACACGGATTTGGAAGTCGAAGACACAAACAGAGATGCACGAACAAATTGGTGCTTGCAATGTGCGCACAAGTAGATCTAAGTGAGGACGAATGGAGAGCGGATATGGGTCGAGAGTGCGACGAACTGTGTGGATGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCAGAAGGAGTAGTGGCGGCGGCGGCAGAATCAGAGACGAGGATTTTGATCTAGGAGGCAGAGCGAATTACTTGGAGACATGATGTGTATTGATTACTGATGGGTATGGCTCTGCCTCCGTCGACGAATCAACGGAGGCAGACGTGCAGGGATGTGACGGCTAGAATACAAGGAGACTTAAAACCCTATAGCTCTGATACCATGTTGATTTTATGGAATAAATCTATATTTCATTAATTACTTAATAGAGATACAAGCCTATATATAACCATAGAGAAATACACTTAAGGAAATAATATCAAATAATATCTCCAGAATAATATCTCCTAAGAATAATCTAATTATATTAATACTGTGAATCCCAATGGAAATTGCTGAGAAGATCAGATGATTATTCTAAGAAGCAGGGACACGGATACGAGACACGAATACGACACAGAGACTGCGACATGCCATATTTTAACAATCTAGAATACGACACGTGAAGGGCGCGTTTTCTAAAATATTCATTTTAAAAATATATATAATTTTTATAGTAAAAGAAAATTCATAGTAAATGAATTGATGCATTTATATGCTTAAAAGACTTAGCTTAATGTATTCGACACTGAAAAATGAGAATATGTGTCTTTTTAGTCTACTCAACGAGTGTTCTATGCATGTCTAATACATTTGTTGCACTAACAAACGTTTGAAAGGCGTCTACCGAGTGTCAAAATGTCCAAGTGTTCAACTCATGTCGGATATGGGCACGCTAGCCAAACTAAAGTGTCCGTGCTTCTTAGATTATTGTTAGCAGATAAGTGGAGATCAGCTTTTGGATTGGGATTTGTTCATATATTCTGACCTCAAAGGTTTTCAAATTAAAATCTGGCCTTGAGAGGTCAGTGAAGGTTCCAACCAATTCTGTAACTTACATTGAATAATTTCTATGATGGAGGCCAGCCAATAAAATTTTATTAGATAACTGTTGAGGGGAAGACCTGAAAAAGCAGTGGGCCATTGTTCAATGTCACAACCTGCTACGGAGGCTGAACTTTTGCACTACCAGATCATCTCTCGGCTCCTAATATCATTCTCATTCTCAGATTATTCTTCAGACCTGAGAAAGTCTAAAAAGCTTGATGATATTGAAGAGATTAACAAACTCATCTTCAAGAGCAATTGGAGAACAATGGTACAAAATTTCATACAACCCTTGATCCAACCTTGGTTTTACATAAGTAATAATGGTCTTTTAATCTTCTGGTCTTAGCTCGTCATTGGCTTCTTCACTTCCACGATAGCGTTTACAGAATCTAAATAAACTACAACAAAGGCCTTTTCCAGGTCCAGTTTAACGTCTGCACCCTTCTTCTTCCTTATTCAAACATCAAGGAGTGCTGGACAAGAATCAATAATTTGTTTCTACCGGAAAAAGCTTACTGGTGTTCTATACTTGTATATCATATAATCTTTTAGACATTTTAATAAAAACTTAGTGGGTAAGGCCACTCAGTTTGAACTAATGGCCATTTTTGCATTGCACTTCATTAGATTAAGGAAACTGCACATCTCATTAATGCTCGTTGCTCATGTCATTAATGTCGTTTTAGATAAGTCCGTGGAACAATTTCATTAACTTTTGCAGAAGAATGTTCACCCTTTTCTGAAGAATGCTGCTGTTAAACAGTCTAGCCGCTAGGGGTCTACACAAAAGCTTTGCAAATCTTTCAAGATCTCACCTTAGTAAAACTGCTTCCTGCAACTTCCTTTGGTAATCACTGATCTGAGAGAGTTCAAATCAAGATTAGATTGGAAAACCTTGCCGTTGTACTGGGGAATGTAAGAAGTTAAAGAACTTCCTTAACCTGCCACTCTTTTATTGAGGTTTGGGAATGCAACTAAAGTTCCATATTGGTTACACAAGGGGAAGATCATAATTCAGGACTGTATAAGCGAGAGACAAGATCTCCATTGATAGGTGGAGGGTTTCTGTTTTTGGTCTACTAGATCTGTGAAAACATTGGGTGAGAGGTTTTGTAGCTATGGGGAAGTCTACTTCCTGCTTTATGATTATCGCGTGCAGTGGTGATTCCAGCGACAAGATGATATTGATATTCCTGAGGCATGTATGTATCTAATTGGCTCTTACTTCCGAGTTTTGCCTTTTTCATTTGTTTTCTCTTCTTTTTATTTTCATTTTAGTTTTTTGATCTTTTTTTTTTAATGTTGAACTAGCCTTTATTACTCCAAATTAGTCTCTAATTACTGGAAGTGAGCAATGTACTTTCTCCTCGAGTTTACTTTGTAAGAAATGTTTGTTTTTTTGTGAATTTGTGTTATTTAATGATCTACTTTGTTTCTCGCTTATCAAAAGAATTGGAATTAGAAGAAGATTTGTTTAGCATTTTATGAGAACGGTGATGCATTAAAGATTCGATTTTATTGAAATCTTGTTCCTTTTAATAAAGATTTAGCACTTCTTTTCACATGCTATTTTTCAATGCTCATCATATATTAATTTCTAACTCGCACATCCTATAACTTGTAAATTGATGCATATGTT ATGTTCATAACCAAAGAGCTCAAACCGCTCTCCAATGGCCCTCTCTTTATCCCTACAACAACTCATTCGCTTCCCTCCCCATCCTCTCACCTCGCCTCTCTCTCCCGCTTCTTCCCATCTCCATGCCTTTCCTCTTTCGCTCCGTCCCCAGACTATGCCGTCAAGTTATCTTCCAGAACAAAGTGTTTCTCCATGTCCACTGAGGAGGACAAGTGGAGTGAATCTGATGCGTTTGTCTCCGATGTCGACGAAGGGGGTGATCTTGAGGATGACATTGATATTAGTGTTCGGGAAGACAGCCCTGTGGCCACTGCTGCTTCTGCGCAGAGGATTTCTTCTTCACCCAGTGATTATCTCTCGCTTGCGATTCCTGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGCTGATGGAACCGTATCCACCAGGAAGGTTAACAGACGGCAGCTGTTGAAGTCAAGTGGGCTTCGTCCTCGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTACGTGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCCATGCAGGATTGTGTCCTCATATTCGATCATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGGGTGCCAGCAATGCCATTTGAACTCGAGTCTAGCCGCTAG ATGTTCATAACCAAAGAGCTCAAACCGCTCTCCAATGGCCCTCTCTTTATCCCTACAACAACTCATTCGCTTCCCTCCCCATCCTCTCACCTCGCCTCTCTCTCCCGCTTCTTCCCATCTCCATGCCTTTCCTCTTTCGCTCCGTCCCCAGACTATGCCGTCAAGTTATCTTCCAGAACAAAGTGTTTCTCCATGTCCACTGAGGAGGACAAGTGGAGTGAATCTGATGCGTTTGTCTCCGATGTCGACGAAGGGGGTGATCTTGAGGATGACATTGATATTAGTGTTCGGGAAGACAGCCCTGTGGCCACTGCTGCTTCTGCGCAGAGGATTTCTTCTTCACCCAGTGATTATCTCTCGCTTGCGATTCCTGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGCTGATGGAACCGTATCCACCAGGAAGGTTAACAGACGGCAGCTGTTGAAGTCAAGTGGGCTTCGTCCTCGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTACGTGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCCATGCAGGATTGTGTCCTCATATTCGATCATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGGGTGCCAGCAATGCCATTTGAACTCGAGTCTAGCCGCTAG MFITKELKPLSNGPLFIPTTTHSLPSPSSHLASLSRFFPSPCLSSFAPSPDYAVKLSSRTKCFSMSTEEDKWSESDAFVSDVDEGGDLEDDIDISVREDSPVATAASAQRISSSPSDYLSLAIPEQVYEVLEVKADGTVSTRKVNRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDHNRPGGQAFIESLLPRLNPKNMNGVPAMPFELESSR
BLAST of CsaV3_4G022020.1 vs. NCBI nr
Match: XP_008462287.1 (PREDICTED: LOW QUALITY PROTEIN: magnesium transporter MRS2-11, chloroplastic [Cucumis melo]) HSP 1 Score: 330.9 bits (847), Expect = 3.7e-87 Identity = 180/212 (84.91%), Postives = 187/212 (88.21%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. NCBI nr
Match: XP_022964732.1 (magnesium transporter MRS2-11, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 313.5 bits (802), Expect = 6.1e-82 Identity = 172/209 (82.30%), Postives = 186/209 (89.00%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. NCBI nr
Match: XP_022964826.1 (magnesium transporter MRS2-11, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 313.5 bits (802), Expect = 6.1e-82 Identity = 172/209 (82.30%), Postives = 186/209 (89.00%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. NCBI nr
Match: XP_023519709.1 (magnesium transporter MRS2-11, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 313.5 bits (802), Expect = 6.1e-82 Identity = 172/209 (82.30%), Postives = 186/209 (89.00%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. NCBI nr
Match: XP_022970311.1 (magnesium transporter MRS2-11, chloroplastic-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 310.8 bits (795), Expect = 3.9e-81 Identity = 174/220 (79.09%), Postives = 189/220 (85.91%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TAIR10
Match: AT5G22830.1 (magnesium (Mg) transporter 10) HSP 1 Score: 183.0 bits (463), Expect = 2.2e-46 Identity = 121/240 (50.42%), Postives = 151/240 (62.92%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TAIR10
Match: AT3G19640.1 (magnesium transporter 4) HSP 1 Score: 45.4 bits (106), Expect = 5.6e-05 Identity = 27/90 (30.00%), Postives = 48/90 (53.33%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TAIR10
Match: AT5G09720.1 (Magnesium transporter CorA-like family protein) HSP 1 Score: 41.6 bits (96), Expect = 8.1e-04 Identity = 29/101 (28.71%), Postives = 51/101 (50.50%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. Swiss-Prot
Match: sp|Q058N4|MRS2B_ARATH (Magnesium transporter MRS2-11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MRS2-11 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 4.0e-45 Identity = 121/240 (50.42%), Postives = 151/240 (62.92%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. Swiss-Prot
Match: sp|B8APK3|MRS2A_ORYSI (Magnesium transporter MRS2-A, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=MRS2-A PE=3 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 5.8e-44 Identity = 88/121 (72.73%), Postives = 109/121 (90.08%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. Swiss-Prot
Match: sp|Q9AUK4|MRS2A_ORYSJ (Magnesium transporter MRS2-A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MRS2-A PE=2 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 5.8e-44 Identity = 88/121 (72.73%), Postives = 109/121 (90.08%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. Swiss-Prot
Match: sp|Q7SFQ9|MRS2_NEUCR (Mitochondrial inner membrane magnesium transporter mrs2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrs2 PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07 Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. Swiss-Prot
Match: sp|Q6C8H7|LPE10_YARLI (Mitochondrial inner membrane magnesium transporter LPE10 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=LPE10 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.7e-06 Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TrEMBL
Match: tr|A0A1S3CI47|A0A1S3CI47_CUCME (LOW QUALITY PROTEIN: magnesium transporter MRS2-11, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500679 PE=4 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 2.4e-87 Identity = 180/212 (84.91%), Postives = 187/212 (88.21%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TrEMBL
Match: tr|A0A2K1Z8A4|A0A2K1Z8A4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G151400v3 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 9.3e-55 Identity = 132/219 (60.27%), Postives = 155/219 (70.78%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TrEMBL
Match: tr|A0A2K1Z882|A0A2K1Z882_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G151400v3 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 9.3e-55 Identity = 132/219 (60.27%), Postives = 155/219 (70.78%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TrEMBL
Match: tr|A0A2K1Z886|A0A2K1Z886_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G151400v3 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 9.3e-55 Identity = 132/219 (60.27%), Postives = 155/219 (70.78%), Query Frame = 0
BLAST of CsaV3_4G022020.1 vs. TrEMBL
Match: tr|A0A2K1Z896|A0A2K1Z896_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G151400v3 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 9.3e-55 Identity = 132/219 (60.27%), Postives = 155/219 (70.78%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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