CsaV3_4G016060.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G016060.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 10666778 .. 10669580 (+)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAATTAGCTAGGTCAACAAATTAGCTACAGAAAAGCAATAAAGATTTTATCATCTACAAAATCTTCATAAAACATACATCTTCAATAAAAGATCTATAGATACTATCAAAACCAACACAAAATACAACAACAGTAAACAAAGTCTTCATATCTAAAATTTTACCAAGTCTTTCAACAATCAACACTTCCATTAAGCAAGCGAATCTTATAAAGAATTACAAATGGAGATCTAAACCTAATAATTATGAGAAACCACAAAGTATGATAAAATTGGCTCACCAAAGCGTTAGAACTACAAATTTGTTGTAGTGAGTTGAAAGATTTTGAAGACTTAGTACTATTCCACCTGCCATAGCAAACATCACATAAGGCCAATTATCCTGCATATAAGCCACACTTCACAACATTATAAACCTATTATTATTTACAATAATGTCTACATAAACCTATTTGTTAAGTGCAAATAATTGGAATAACCGCCACCAAAGTATGATGGTATAGTTGCAATTACACTTCCAAACTTTCCATCATAAAAATTGAACGCCCACAAATTTATACAATAAAACACCTACAAACGTGTATAATTTCTACAACTATGTAAGTCAAATTTTAACATTTTTGAGTTTGAAGGTTTTTAATTTTACCATATGACTATGGGTGTGGTTTTTGTAATTAATTTGTCCATTTTTAAAGATTGAGATGGTTTAAATCCCATTTTAGTTCTTAAACTCTTAGAAGAAAACTAATGTAGCACGTACTCTATTATTTTTCCATCTAATAACACTTGTCCAAATGTTTGTCATTAACTTATATATGACTACAAATTATGTTCGAATCGGCATGCTAGAACACATACTTGAAACTATGTCATTAGTAAGATCAAAATATCATATACTTTAAGAGCTTAAGTACTAAACTCACTAAAGGTTGGATAAGCAATCTCACTAAAGGTTGGAGAAGCAATCTCACCAAAGGTTGGAAAAAAGCGATCATTAAAGAAGAATAAAGTTCAAACAAAAGTTCTAGGTTAATGTCTAAACATCAGTCATCAGGTTTGATACCTTTAAAGAAACAATGTTACTATTAGATAACAACACAAATAAAAGACTAAATTAGCTATGGTTCCCAGTATTATTGATTATAAAGAGCTATCACATGTGACATACAAGAGTTTCACATTTCTCCATCATAAAAGTAAAATTTCGATAAATACAAACTTCACTTTATATCTTCAATAAAAAAATCAGAGGTTCAAATCCCCTGGCCAAAAGAAAAGAGTAAACTTACAACCAAAAGAGAAGGTATTATGTGAGATTTAACAAAATCTATCCAAATAAATGAAAAAAGGGAAGGTATTTGTCCAGCTGTTTGTATTCTACCTGTGATCAGAATTCAATAGTTTATATAACAATTAAGAGAAGTACTAAATTGGAGAGAAGCCAACTCCAAATGTGGAATCTCAACTTCTATAAACCACAGCCATTGTGTTCTAGTTTCTATAATGCACTCAATCCTTACAAACCGTGTGATGCCTAAATTCATTCCCAAGATGAAGTTTTAAACTCACAAGAATTTCCAAACACAAAACAAACACAACCTATAATATGAGTAAAAGATTTAGTAGAATTAAAATAACGCCAGTTTGTTACCATCAATCTCAGCTTTCACAGACTGCACACCTAAAGAATAAACAAAAACAAAAGCTAGAACCACATTAATGGTATCAGATTAATGTAATATAGAGCCTTGACGAAGAGATGAAAGAAGAGGAGATGGAAGATGGAGCCTGGAGGATAAGAGAAGTGCAAGATGATGGTGAGATGAGGATTTGATTGTCAAGGAAACTCATAGATATTAAGAAGAGGTAGAGTTTTTAAAACAATAATATGAGCAAATGAAAGTTTGGCCAAATGGTTCAAGATGAAACTATGCAATAAGGCCAAAAACAATCAGATAAGAAACCTGTGGGATATCTCAACACATAATATTCAACAAACACATATGAATATGATTTATATACAAACTACGAAAAATTGATCCAAACTTTAACCGATGCCAAGAAATTTCAATCTACAGAATCGAAGGTCAAAATATGAAAATTAGGCACTTCATTAGGGGTTTCTTTTTCAAAACCACAAACATGGACTCAATTAATTTGTTGTATAGAAATGGTAAGAAAGCGAAGAACAAAAGGAGGAAAAACTTGGACAAACCTTGAGGTTGAGGAGAAAGAAAATTTAGCGCGGGTCATTAATAGTCGTGGGTCGCCATCAATGCTGACATCAACCATTCCATCTCTTTCCACTCCTCCTCCACCATAATAAGCTATAAAACAAAGAAGAAGAAAAACCACAAACACCAAAACACTTCACTCACTGACCTCGAAAATGGAACGATAAGAACCTCATGAAAAATAGAAGTGCGTGGATCGTCGTCAAATTGTGAACTGAGTAGGTGGTTGACCGAAATGACGTGGGTGGTCGCCGTTATATTGAGAAACTGATTAGTATGGCCGACTGAAATGTTGTGAGTCGTCGTTGATGAGAAATGGAGTAGTGACGTGGCCAGGACGTGCTTTGTTTCGAGCTTCGTGGTTCACCGTCGATGAGATGTATGGCCGGTCGTTGGACGTGAAGATGGAGAGGATTGAAATCGGGGGTGGGATTTTGGGACTTTGTGGAGATGGGGATGAGGTTTTGGAACTCTGGCGGAAAAGTAATTATGGCATCTTAGAAATTGGAGAAAAAAATATTTGAGGAAAAAATGTGGAAAAAGTGTGTTTTCACAACACTGAAGTAAAT

mRNA sequence

ATGAGAAATGGAGTAGTGACGTGGCCAGGACGTGCTTTGTTTCGAGCTTCGTGGTTCACCGTCGATGAGATGTATGGCCGGTCGTTGGACGTGAAGATGGAGAGGATTGAAATCGGGGGTGGGATTTTGGGACTTTGTGGAGATGGGGATGAGGTTTTGGAACTCTGGCGGAAAAGTAATTATGGCATCTTAGAAATTGGAGAAAAAAATATTTGA

Coding sequence (CDS)

ATGAGAAATGGAGTAGTGACGTGGCCAGGACGTGCTTTGTTTCGAGCTTCGTGGTTCACCGTCGATGAGATGTATGGCCGGTCGTTGGACGTGAAGATGGAGAGGATTGAAATCGGGGGTGGGATTTTGGGACTTTGTGGAGATGGGGATGAGGTTTTGGAACTCTGGCGGAAAAGTAATTATGGCATCTTAGAAATTGGAGAAAAAAATATTTGA

Protein sequence

MRNGVVTWPGRALFRASWFTVDEMYGRSLDVKMERIEIGGGILGLCGDGDEVLELWRKSNYGILEIGEKNI
Homology
[Close]
BLAST of CsaV3_4G016060.1 vs. NCBI nr
Match: KGN54005.1 (hypothetical protein Csa_4G259430 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 6.3e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRNGVVTWPGRALFRASWFTVDEMYGRSLDVKMERIEIGGGILGLCGDGDEVLELWRKSN 60
          MRNGVVTWPGRALFRASWFTVDEMYGRSLDVKMERIEIGGGILGLCGDGDEVLELWRKSN
Sbjct: 1  MRNGVVTWPGRALFRASWFTVDEMYGRSLDVKMERIEIGGGILGLCGDGDEVLELWRKSN 60

Query: 61 YGILEIGEKNI 72
          YGILEIGEKNI
Sbjct: 61 YGILEIGEKNI 71

[Close]
BLAST of CsaV3_4G016060.1 vs. TrEMBL
Match: tr|A0A0A0KWQ6|A0A0A0KWQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G259430 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRNGVVTWPGRALFRASWFTVDEMYGRSLDVKMERIEIGGGILGLCGDGDEVLELWRKSN 60
          MRNGVVTWPGRALFRASWFTVDEMYGRSLDVKMERIEIGGGILGLCGDGDEVLELWRKSN
Sbjct: 1  MRNGVVTWPGRALFRASWFTVDEMYGRSLDVKMERIEIGGGILGLCGDGDEVLELWRKSN 60

Query: 61 YGILEIGEKNI 72
          YGILEIGEKNI
Sbjct: 61 YGILEIGEKNI 71

The following BLAST results are available for this feature:
BLAST of CsaV3_4G016060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54005.16.3e-35100.00hypothetical protein Csa_4G259430 [Cucumis sativus][more]
BLAST of CsaV3_4G016060.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G016060.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G016060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWQ6|A0A0A0KWQ6_CUCSA4.2e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G259430 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G016060CsaV3_4G016060gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G016060.1.exon1CsaV3_4G016060.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G016060.1.cds1CsaV3_4G016060.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G016060.1CsaV3_4G016060.1-proteinpolypeptide