CsaV3_4G012050.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AATGGCGTTTACTTCTTCTTGTTTACCCCAAAAAGAAAGACGAAATTACAAAGGGAATCTTTAGTTGCCGTTTGGGGAACTCCTCTATTCATACCCATGCAACAAATCCGCCATTGTTAGGGCTACAACAGTCAAACTTTATCACTAGTACCTTGTTTCCAAATCCCCAAACCAGGTTCTGTATACCACCAGTTTATTCTCAATCTTAGGGGCGGCCACCCAACCTCTCCAAGCAGATTTCTCTCTTTCTTCCATTTTTCTCTCTATTTTATCCACTTTTTTTATTTTTTTCTTTTTACATTCTTATTTCTCTCCCCCCATCTCACAATGTATTGTCATTCTACTCAAGCAATTCCTCCTGTTCCAAATGGCCCCCGGTTTTCCTTTCTTTCTCCTCTCCTCTTCTTTCTATATAATATTTTCTTATTCCACTTCCTTTTTCTGTTCTTTCATCCTCATCTCCTTCTTCTTCTTCCTGACTTGTTACCTTTTCTTCGGTTCTTGTTACTTGTTCGTCTCTGATTTCTCCTTTTTCAACGAACCCCATTTCCATTTCTCTTCAGTTTTTGATTCCCCTGCTTTATAAAGACCGAACCAGATCGTATTTCTGCATCCTTCGATGCTTTTCGCATCTGGGTTTTTGATTTTGGGTTGAAATAACCGTGTTAATTTTTTTTTTTTTTGTGGGAGGGGGGTTTTTATTGAGTTCTCCTGAGAATGGAAACGAGAGCGGTGAATCGAGGGAGTAATAGAATTGGGCATGTGAATAAGGTTCAGTATGTGAGAAGGGATTTTAAGAAGAGGAAATGTAGAAAGATCAGACGGTCTATTCCTGTAGTTCCTATGGCGCTTCAGGAACTGTTTGTTTCTTGTAGGGAAGTCTTCAAAGGCCCTGGAACTGTTCCACTGCCTTGTGATGTTGAAAAACTCTGCCGCATTCTTGGTAATATATGTTTCACAGTTTGAATCCTATTTTGTTTCATCCTTTTCATTCTTGGGGTGTTTGATTTCTTAATGTTTTAACCATCTCTAGGAAATTAGCTTAGTTCGATCCTCTGATTTATTTACTTTTATCTTTTCATTTTTGGCTAAGTGACATGGTTTGGAAAGTTCTGAGGTTCTACGGCATTACTATTTCTGGCTACATGCATAATTTATACAACAGTGGAATTTCTTTTCTTTACTCTGTTTCTTAAGCAATTAATTCTTGATCTTCCCTTTATTGATTTGTCATATCATATGATGCTTATATGTTAATTTCACCCCTATGCTCTTGAATTGTTATAGGATTCTTTTAATTTTAGACTGAAACCCATATATATATAGAGAGAGAGAGAGAGAGAGGTTTTCTTCTCTCGTGGAAAATTGGATGAAAAACCCTCCGATTATTTTATAAATTTTATCAGATGAACTTATTTAAATTATCTTTCTGATGCAGTTTTTCCCTTTTTTAATCATAATATCACACACTTCGATGCAGTAACATTTACTTGAGTGAACATGAATTATTTGATTTTCTTTTTTTATTAGCCTCGCGGGACATATTTGAGCCACATAGTTTCTGTTTAACTAGCAGATTTGAAATATTAAAAAACAAAGGGAATTTGGGGGACTATTTCAAATCCATGGTCAACTCATGATTGTCAAATGAAGATTAGTGAAATTATGGAATAATAATAAAAAGGCAAAATTATAATACCTTGAACTTTCGCATTTGTTTCAAACGGATCTGTATATTTTTCGAACTAATATTGTTTTAGGCCATTGCCTCACTATTTTGGTCCTAAATTTTTTTCTAAATTTTTAAAGATATAGGCTCTAAATCTAATGATAGTTCTGTAACCTTTATTGAAAAGTGAAAGGTAAGATTAATAAAGGTCAATGGTAAGATTGCCGCTTTTGAAAGTATAGTGGTGATTTTGCAAAAAAAGAGGAAATTCAAGGTTTTTTTTTTTTTTTTTTATTAATTTAACATAATAAAAAATGTAGCAGATTCGTAGGAATAGATTCATCTGTCTGAACAGTATAGTATTTTTTGTATTTGTTTACATCGTACAATCATAATACATCTCTCTTTCTCTCTAATTAACAAATATTTTTTTTTATGTTGTGCTTTGTTGTGCCATGGGGGCACATGATCAGTGATGACTTATGAGCATTCTTTGATAAGCCCATGGTTTTTGGGAGAAATTGTAGGGTCCAGGATCATTGGATTTTAAACTTCTGTACTCTGTATTCCTTAGCATATACACATAGTTAAATATTGACCAAATTCTTTTTACTTTTTCAATGCTGCAGATAATATGAAGGCAGAAGATGTTGGACTTAGTAGTAGTTTGCAGTTTTTCAAGCCCAATGTTCCAGTCAAAGGATCCCCTAGAGTCACATACACAACCATATACAAGTGCGACAATTTCTCGGTAAGGCTAATGTAGTGCCTTTCACTAGTTCTGGGCTGCTTTTCGTCTAAAGCGACCTATGCTATGTTTAAAAGGGAAAGCATATATAAACCACGAGATTAATCAAATTGATATAAATCATGAAATTACTTATGAGCATCCAAGTTGAATATAGGGCAAGCTTAAATATCATAAGTTAAATATATTAGTCAAAGTGCACAAAATATATGGGTTGGCCCAAGAGCTAGTGGACAAAGGAGCAAGTTAATAAACTGTGACATTATTGTTAAACCTAAGTTGGTTAACATATGTCCTTAGCCAATAGGTCAGAAGTTAATACTCCTATTTATGTAAGATTGAAAAAAAACAATAGTAAGATTATAGGAGAATAACTAGAGTGATCAAACTTATGAACTATAAGTGAAAGTATGTACAGCACACTTGTAAGTCGCTGAAAACTACAAATCTAGTTGAGCTGTGTGTATATTCTTCTATAGGTTTTGTAACATCTTTAAATTTTATTTCCAAAATGTGTAAACAACATTTGATTGCTTGGTTCCAAATTCCTGACGGCATATCTTTTTTCTTCTTACTACAGTTGTGCATCTTCTTCCTCCCTGCAACTGGTGTAATCCCTCTACACAACCATCCTGGAATGACTGTTTTCAGTAAGCTTCTTTTGGGGAAAATGCACATCAAATCTTATGATTGGGTTGATCCAACTAACAGTGATGATACTGCCCAACCTTGTGAAAGTGAGCGCTCTGCAAGTTTCTTATTATAAAATATGAAATTGTTGGGAGAAATTCTGGTTGTTTATCCTGAAGTGATGATGGATTGTTTTCTTTTTTCCCTTTTTGCAGAGAGATTGGCAAAGCTGAAAGCCGATGCTGTCTTCACTTCACCCTGCAGTACCTCTGTTTTGTACCCAACATCAGGAGGCAACATCCACTCATTCACTGCTATAACGCCATGTGCGGTGCTTGATGTGCTTGGACCTCCTTATTCCATGGAGGATGGTCGAGATTGTTCGTACTATAAGGAACATCCCTATGCCTCTTTTCCAAGTAAGTTGCAAATGATGTTTTCTTATTTAATCAGTTAAGTTGACTTTAAAACACTTCAAATGATGCAAAAAGGGACAGCTGTTTTAATTGGCTATGTGTAAACTTTGGATATCAGGTTGTTTGTTCTTGTGTTTTCGTTCTGTTTTTGGGAGCGATTTTGTAAGGGTAAAATCTGCAGTAATCCTTTTAAAATTGAAAAAGGAAAAGAAACTGTTTTTTGAAAGTGACTCTTTTTGTCATGTGGACTTTTTCTGGTAAAATAACATTCAGATAGTGAAATTTTGACAAGTTCATGAAAGAGTACTTTGGGTGGGACATTGTTGAATGTTGCTGTTATTTTTATTATTTTTAATTGAACTGTAATTCTTACTTAATTTTTTCCCTCCTAAAATAATAACAAGAACTGTTTCTGAAAACCCCCATTTTCTCATACTTTATTATGCTATTTTTGTTGAGGTTATGGGATCGTTTCTGTATTTGGAGTATAATAGGGGAATTCGAACCACATACCTATGGTTTTGGTTATTCACTCTTTCTCATCCTGACTTATATAAGTACCATATAGAGTTCATAATTTTATGATTTTGCACTATTCTTATTCTTATAAATTAAATGTTTTGTAATGCAGATGGTGACATGGGATTGGGAGAAGAAGATCAGGGTGAGGGTTATGGATGGTTAGAAGAGATTGAGGTGCCAGAAAACTCTGAAATGGATGGAATAGAATACTTAGGCCCTCAAATCTGTGACATTTAAGCCTAGTTTTGTTTTGTTTACTTTGCCTCACATTTATTTACCTCCACTTCACAATGCCCTTCCCTCTTTTTCTTTTATTTATTTGTTTATATCTTTCATCTTCATCTTCATCTTGTTTTCTGGGGTTTTAAACTTTTTTTTCTTTGACTGTAGAGCTTCTCCAAAAGTCAACTTCTTTTGGTTGTTGTATATAAAAATGGTACAAAGTTGTATCTTTCATGCCTTCTTCTTTCCTCCTTCCATTGAGGTTTGTTGATTTTTTCTGGTTTTCAAAGAGTGGTGGGAGATTTCTTCATGCTCTATCTGATGTAGTGTAAATTTTTTAATGAAATATTCACATAATAATGTATGTAAAGTACTAATAGCTAAAGATTTAAGATGTCCTATCGTGTAAGGAAGTATTTAATTTTTATTTAAGATGTCATATCGGGTAAGGAAGTATTTAAT ATGGAAACGAGAGCGGTGAATCGAGGGAGTAATAGAATTGGGCATGTGAATAAGGTTCAGTATGTGAGAAGGGATTTTAAGAAGAGGAAATGTAGAAAGATCAGACGGTCTATTCCTGTAGTTCCTATGGCGCTTCAGGAACTGTTTGTTTCTTGTAGGGAAGTCTTCAAAGGCCCTGGAACTGTTCCACTGCCTTGTGATGTTGAAAAACTCTGCCGCATTCTTGATAATATGAAGGCAGAAGATGTTGGACTTAGTAGTAGTTTGCAGTTTTTCAAGCCCAATGTTCCAGTCAAAGGATCCCCTAGAGTCACATACACAACCATATACAAGTGCGACAATTTCTCGTTGTGCATCTTCTTCCTCCCTGCAACTGGTGTAATCCCTCTACACAACCATCCTGGAATGACTGTTTTCAGTAAGCTTCTTTTGGGGAAAATGCACATCAAATCTTATGATTGGGTTGATCCAACTAACAGTGATGATACTGCCCAACCTTGTGAAAAGAGATTGGCAAAGCTGAAAGCCGATGCTGTCTTCACTTCACCCTGCAGTACCTCTGTTTTGTACCCAACATCAGGAGGCAACATCCACTCATTCACTGCTATAACGCCATGTGCGGTGCTTGATGTGCTTGGACCTCCTTATTCCATGGAGGATGGTCGAGATTGTTCGTACTATAAGGAACATCCCTATGCCTCTTTTCCAAATGGTGACATGGGATTGGGAGAAGAAGATCAGGGTGAGGGTTATGGATGGTTAGAAGAGATTGAGGTGCCAGAAAACTCTGAAATGGATGGAATAGAATACTTAGGCCCTCAAATCTGTGACATTTAA ATGGAAACGAGAGCGGTGAATCGAGGGAGTAATAGAATTGGGCATGTGAATAAGGTTCAGTATGTGAGAAGGGATTTTAAGAAGAGGAAATGTAGAAAGATCAGACGGTCTATTCCTGTAGTTCCTATGGCGCTTCAGGAACTGTTTGTTTCTTGTAGGGAAGTCTTCAAAGGCCCTGGAACTGTTCCACTGCCTTGTGATGTTGAAAAACTCTGCCGCATTCTTGATAATATGAAGGCAGAAGATGTTGGACTTAGTAGTAGTTTGCAGTTTTTCAAGCCCAATGTTCCAGTCAAAGGATCCCCTAGAGTCACATACACAACCATATACAAGTGCGACAATTTCTCGTTGTGCATCTTCTTCCTCCCTGCAACTGGTGTAATCCCTCTACACAACCATCCTGGAATGACTGTTTTCAGTAAGCTTCTTTTGGGGAAAATGCACATCAAATCTTATGATTGGGTTGATCCAACTAACAGTGATGATACTGCCCAACCTTGTGAAAAGAGATTGGCAAAGCTGAAAGCCGATGCTGTCTTCACTTCACCCTGCAGTACCTCTGTTTTGTACCCAACATCAGGAGGCAACATCCACTCATTCACTGCTATAACGCCATGTGCGGTGCTTGATGTGCTTGGACCTCCTTATTCCATGGAGGATGGTCGAGATTGTTCGTACTATAAGGAACATCCCTATGCCTCTTTTCCAAATGGTGACATGGGATTGGGAGAAGAAGATCAGGGTGAGGGTTATGGATGGTTAGAAGAGATTGAGGTGCCAGAAAACTCTGAAATGGATGGAATAGAATACTTAGGCCCTCAAATCTGTGACATTTAA METRAVNRGSNRIGHVNKVQYVRRDFKKRKCRKIRRSIPVVPMALQELFVSCREVFKGPGTVPLPCDVEKLCRILDNMKAEDVGLSSSLQFFKPNVPVKGSPRVTYTTIYKCDNFSLCIFFLPATGVIPLHNHPGMTVFSKLLLGKMHIKSYDWVDPTNSDDTAQPCEKRLAKLKADAVFTSPCSTSVLYPTSGGNIHSFTAITPCAVLDVLGPPYSMEDGRDCSYYKEHPYASFPNGDMGLGEEDQGEGYGWLEEIEVPENSEMDGIEYLGPQICDI
BLAST of CsaV3_4G012050.1 vs. NCBI nr
Match: XP_004149110.1 (PREDICTED: 2-aminoethanethiol dioxygenase-like [Cucumis sativus] >KGN53913.1 hypothetical protein Csa_4G188410 [Cucumis sativus]) HSP 1 Score: 587.0 bits (1512), Expect = 3.3e-164 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. NCBI nr
Match: XP_008442017.1 (PREDICTED: plant cysteine oxidase 2-like [Cucumis melo]) HSP 1 Score: 556.6 bits (1433), Expect = 4.8e-155 Identity = 267/279 (95.70%), Postives = 274/279 (98.21%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. NCBI nr
Match: XP_022966423.1 (plant cysteine oxidase 2-like [Cucurbita maxima]) HSP 1 Score: 515.8 bits (1327), Expect = 9.4e-143 Identity = 245/277 (88.45%), Postives = 262/277 (94.58%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. NCBI nr
Match: XP_022924929.1 (plant cysteine oxidase 2-like [Cucurbita moschata]) HSP 1 Score: 515.0 bits (1325), Expect = 1.6e-142 Identity = 244/277 (88.09%), Postives = 263/277 (94.95%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. NCBI nr
Match: XP_023518747.1 (plant cysteine oxidase 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023518748.1 plant cysteine oxidase 2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 515.0 bits (1325), Expect = 1.6e-142 Identity = 244/277 (88.09%), Postives = 262/277 (94.58%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TAIR10
Match: AT5G15120.1 (Protein of unknown function (DUF1637)) HSP 1 Score: 246.1 bits (627), Expect = 2.5e-65 Identity = 122/241 (50.62%), Postives = 164/241 (68.05%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TAIR10
Match: AT5G39890.1 (Protein of unknown function (DUF1637)) HSP 1 Score: 241.9 bits (616), Expect = 4.7e-64 Identity = 126/245 (51.43%), Postives = 165/245 (67.35%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TAIR10
Match: AT1G18490.1 (Protein of unknown function (DUF1637)) HSP 1 Score: 206.1 bits (523), Expect = 2.9e-53 Identity = 102/247 (41.30%), Postives = 142/247 (57.49%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TAIR10
Match: AT3G58670.1 (Protein of unknown function (DUF1637)) HSP 1 Score: 191.0 bits (484), Expect = 9.6e-49 Identity = 98/244 (40.16%), Postives = 139/244 (56.97%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TAIR10
Match: AT2G42670.2 (Protein of unknown function (DUF1637)) HSP 1 Score: 180.6 bits (457), Expect = 1.3e-45 Identity = 96/245 (39.18%), Postives = 140/245 (57.14%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. Swiss-Prot
Match: sp|Q9LXG9|PCO1_ARATH (Plant cysteine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PCO1 PE=1 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 4.5e-64 Identity = 122/241 (50.62%), Postives = 164/241 (68.05%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. Swiss-Prot
Match: sp|Q8LGJ5|PCO2_ARATH (Plant cysteine oxidase 2 OS=Arabidopsis thaliana OX=3702 GN=PCO2 PE=1 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 8.5e-63 Identity = 126/245 (51.43%), Postives = 165/245 (67.35%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. Swiss-Prot
Match: sp|Q1G3U6|PCO3_ARATH (Plant cysteine oxidase 3 OS=Arabidopsis thaliana OX=3702 GN=PCO3 PE=1 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 5.2e-52 Identity = 102/247 (41.30%), Postives = 142/247 (57.49%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. Swiss-Prot
Match: sp|Q9LXT4|PCO5_ARATH (Plant cysteine oxidase 5 OS=Arabidopsis thaliana OX=3702 GN=PCO5 PE=1 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 1.7e-47 Identity = 98/244 (40.16%), Postives = 139/244 (56.97%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. Swiss-Prot
Match: sp|Q9SJI9|PCO4_ARATH (Plant cysteine oxidase 4 OS=Arabidopsis thaliana OX=3702 GN=PCO4 PE=1 SV=2) HSP 1 Score: 179.5 bits (454), Expect = 5.2e-44 Identity = 93/243 (38.27%), Postives = 137/243 (56.38%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TrEMBL
Match: tr|A0A0A0KWK6|A0A0A0KWK6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G188410 PE=4 SV=1) HSP 1 Score: 587.0 bits (1512), Expect = 2.2e-164 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TrEMBL
Match: tr|A0A1S3B5D6|A0A1S3B5D6_CUCME (plant cysteine oxidase 2-like OS=Cucumis melo OX=3656 GN=LOC103486005 PE=4 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 3.2e-155 Identity = 267/279 (95.70%), Postives = 274/279 (98.21%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TrEMBL
Match: tr|A0A1R3HJA4|A0A1R3HJA4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28624 PE=4 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 1.0e-108 Identity = 187/270 (69.26%), Postives = 217/270 (80.37%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TrEMBL
Match: tr|A0A2I4E0G9|A0A2I4E0G9_9ROSI (plant cysteine oxidase 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108985159 PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 2.9e-108 Identity = 195/279 (69.89%), Postives = 225/279 (80.65%), Query Frame = 0
BLAST of CsaV3_4G012050.1 vs. TrEMBL
Match: tr|A0A1R3HCA5|A0A1R3HCA5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20242 PE=4 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 4.9e-108 Identity = 186/267 (69.66%), Postives = 215/267 (80.52%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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