CsaV3_3G043850.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G043850.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMediator of RNA polymerase II transcription subunit 9
Locationchr3 : 35733288 .. 35738624 (+)
Sequence length795
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAATTTAGAGCTTCAGCTCTCCATTTATCTCAAAACTCTTCTTTTAAAATCTTTAATGCCTTAGAAATAGAATGTATCCTTTTTGTTTTTCTTTTTTGGCAATTTAAATTTTCAAATCCCAAACAATCTCGCGAACCCTAATTTCTAAAATTCCGAAATACGAAGAAGAAGAAAGCAAATAAATCAGCAATATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCTAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATCCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACAGCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCTCAATTTCAACAGCAATTGCAAACCCAACATTTCCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATGTAATGCGTTCAAACCCCCCACATCATTATCAGTGTTCTCTGTGGTACTATATTTTGTGTTTGTTGACATTCTTCGATGTTTTGTGTGTTGTAGCTTGTGGAGAAATTAGCGGATGCAATCGAGAACGGAACTAGAGATCAGCAATCTGATGCATTGGTAGCAATTTTGATTGTTTTTAAAAAAAAATCCTTAAGATTAATTAAAATCTTGTTTGCTCTGATAATTTGTTCTTGTAACGTTTGGAAGGTTAATGATCTAAATAACCACTTTGAGAAGTGCCGGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAAGCTATGGTATATTGGAACTCTTTTTTCTTTTTCCTGTCTGCTCAGGTTCTTGAGTGTTCTTCTTGTGTTTGACATAACCGATCCACCATTGCAGATGCGATTTATCAAATTTTCTGAAGTATAGATTTACAAGTGTTAAAATTTTTCTTTGTTAGTGTCTAAATGTTGGTGATGATGGTTTCTAAGACAAAAGGTTTTAGTAGAGCATAGTACAATACTCATATATAGAGAGATGAAGTAGCATCTCATTTGTAACCCGTTAACCCTTTACTACAAGTGCAAACCATTAAACCTTTGGACTGCTTTTGTGAAGGCTGAGGCTCACCAGGACTTCAAGAAATGTCCTATTTCCTTCCGACTTTTGTTTTATTGGTTTGTGGTGAACGATATGTTTTCTTGTGGAAAAATGAGGTAAGGATATTGTTTTTTTTTTTTTTTTTGGGTTGCAGACAGTAGAGGGGCAGAAGAAAAAGCTAGAAGAACATGAGCAGTTGTTAAGTCATCGAAGGTACGGTGATATAATGCCATTTTTTGCCTCTGGTTCTCATTAAATTGTCTCATTCATCAATGTGTATATTAATGGTTCTCTATTCAAATAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGCGAGCCCTAGCTATTTTGCTCCCATTCTGCATTAGGTATACTTCTAAATACGTTGCCTATTTCTTTTGTGTATGTCGCAATTGTCGGAACTTCTTTTTAGCTTTCTTTTTTCTTTCTCATTGCCATCATTTTCCTAAAAGTTTGTAACTTCTGTGGCTGGATTTGAAATGTGGTTTTCCGCGAACAAACACTAAAACTTAGATGATTGTCCAAATTTTCTGTTGAGCACTGCATATACCAGATTTTGTGCATTCCCAACATTATACATTCTTATGTTCTGTTGGAAAAGGGGGTCCTTTGCTTATAATCACAATCATCTTAGCCCGTATTTGGGGATTAGGGTTGCCCTTCACTTCTCCTCCCTCATTTTGTATGGATGCCAGTATTTCTTTGTTGCAAGTATTTCTTTGTCTAAAAGGGGGTTCAAACTCTCCTACTATTAATCATTCAACATTCTCTGTATTGATCAATTATCTATTGCTCTTAGATATCTTAGGTTTTACTTTTAATTGCTGCATATAGTTCTTAGAGGTTTTCCTTGATAAGTCGAACGCTTGTATTTTGTTGGAGTTGACCTCTGGTTTTGAAAATCTCCAATCAATTGAACGCCATGTGTGCTGTTTACACATTTGAATTGAAACTTTCCTATACCTGTACTATACATATTTTTTCTATTCTTTTTCACAAATTTGTTCTACCTGACTTATCTATTCTACATCATTTCAGGCATGGCTAGCATCATGTTCCCATTTTCAAGTGATGTCAAAATTACTTTTCACCGATTCGCACAACTCCATGGAGAGATTCTTATACCTAATCTGCTTGCCCATGCATTTCCTAACCATAATGATGTTGAATGGAACCCTTTCTGTACTTCAGTGCTATGGGGCACCACTTTTTCTGGAAATTCATTTACCTCTCGTTTAACTTGTACAGTTATTCCAACAGCTTACACTTTTAACTCCTTTTTTTGCGACAATATGTGGTTTGAAAATATTGAACATCTAACTTCATTTTTTTTTTTAATACAAGTACAATACTTGTTGAGTAGAGTGAGAATTTATAGTTCTTAATTATGTTGATTTTGGTGATATGCATAAATTTTGGCGCCTGAATATTGGTTAATAGAGACTAATTACGAATGAAAATGTAGGACCAAGTGAAACCCAAAATGCAGATAATTTTCCCACTCACATGCTATTAACATTATTGGTAAATCTTTGCACCGACCAAATTCACAAAAGACCACCATTTCTGTTCTATCAATCTATATAATCGGGTCCTTCCCCCTTCTATTTCTTTGATCTTCACATCAGGTCAGGGATAAACCACAACGAAGAGCTTCACACATGAAGAGTCTTTTGGTATAAGAATTCAGTTATGTTCTTAAACATTCAATTCAATAATAGGGTCATCAATTTCATAATTTTCTATCTGAAAAGCCAAATCATGAAGAATTTCATCTACTTTCTCTAAACCTTCTGAAATTGTGTATCCTGCTTTGAACATATAAACCTTCTTCTTCACCTCAATCCAGCTCCACCCCGGAACTTTCTTTAAGCCCTTAGCCCTAGCTGAGATCCTCACCCTTGCAGAATCCTCCCATCTACAGCTTGCAGCAAAAATATTCGACAGCAACATATGACTTCCAGTTATCTTGGAATTCAGATTGGAAATTTTCGCTGCAGCTTCTTCTGCAAGATCTGTATCTTTGTGCATTCTGCAAGAGTTGAGAAGAGAACTCCAGATATAAGCGTTGGGTTCCATTGGCATGCCCTTGATTATGTTACTTGCTTCCTCCACAAGTCCAGCACGACCAAGAAGATCGACCATGCACGCATAGTGCTCTATCTCAGGTTCAATCTTGAAGTTCTGTCGCATCTGAGAAAAAAGCCAATGGCCTTCGGCAACAAGACCGGCATGACTACAGGCAGACAGAGCAGCAATAAAAGTAACACCATCTGGTCTATATCCTGATTTAATCATATGATTAAAAGTTGCAAGAGCATCTTTACCAAGTCCATGCGTTCCATATCCTGCAATCATTGAATTCCATGAGATTGAATCTCGATTTTCAAGTTTTTCAAACACCATAAATCCTGGCTTGAAACTTCCACATTTTGTATACATGTTAATCAATCCATTTCCAACCAATACGTTATCATCCATCCGAGCTCTAATGACATGACCATGCATTTCCCTACCAAGATTAAGAGCTGCTAGCATAGCACAAATTGATAAAACACTAGCTATCGTCACTGAGTTTGCCTTTACATTTGCAAGCTGCATTTTACGAAAAACTTCCAAAGATTCTTCTCCTAGTCCCTTGGAAGCAAATCCACAAATGATTGCACTCCAAGTTATAACATTTGGTTTCATCTCTGGATAGGCTTCCATTTTCTCCAGCTGAGAGAGCAATTCCAAAGCTTTGTCATATACTCCAGATTCAGCAAAGGAGGATATAAGAGCGTTCCAACTCACAAGATTTTTCACTTTCATCTCATGAAATAACTTCTCTGCATCTCCTACCCCTCCTCCTTTTCCATATAAGGTTATAAGTGCATTCTTAGCAAACAAGTAATCATTGAAACCTCCCTTGACCATATATCCATGAATCATCTGACCGCTGTTCAATGTAGCTAAATCAGCACAAACAGATAACACCACAGCAAGCATTTCAGCAGTGGGACCAACACCTTTCATCCTCATCTTGCAAAACAATACCATAGTTTCTTCAAGATGACCACACCGAGCATGGCTCGACAGCAATGAAGTCCAAGTTACTGGGTTTGGCTCAACCCCCTCCAACTCCATTTGATGAAACATCCTAGAAGCACCATTAACATCGTAATTATAGGCATAACCAGAAACCATAGTGTTCCAAGAAACTACACTTTTGATGCGCATTTTATCAAACACTTTCCTGGCGTCATCCATTCGTTCAAGCTTCGCATACATCCCAATCAATTCATTCCCCACATGCAAATGATTTTGGAACCCAAATTGCACAACATGACAATGTAGATTTTTGCACATGTTAAAAGCACCCAAATTAGAAGAAGCCCTCAAAAGCAGAGGAAAAGTAAACCCATCCCCCAAAACTCCATAATTTCTCATTTTCCCATACAGTTGAAGCGCTTCTATGCAATACCCATGATATACATTGGCTCTTATAATCGAATTCCATAACAAGAAGTTGGAATAACATTCAAATGGCGCAGAACCAAACACTTTTCGGGCATCAGAAACAAGCCCATAACGGGAATAGATGGACACAAGCCGGGCGGAGACGAACGCTGAACAATAGGCACCGGTGACAACGGTGGCGGAATGAACTTGTTTGCTATGCTGAATGCCGTTGCATTGCCGAAGAAGATGATCGAAGAAATCGGGAAGGTCTTCATCATAAGTGATTGAGGAAAATTGGGAGTGGAAATTGATTGATAATGGAGGAAAACAAAAGGAAACTGATTTGAATCGCTGATAAGAAGAAGCACAGAGCATGAATTGAGTTCGAGGGTTTAGGGTTTTGAAACCCACAAACTTGATATTGGCGCGAATTTATAAGACACCAACAGTTCGCAATTGGGACGACATTGCTAAAAATTTGGTTCTTAGAAAAAACGAAACGACGAGTCGGA

mRNA sequence

ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCTAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATCCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACAGCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCTCAATTTCAACAGCAATTGCAAACCCAACATTTCCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTGGAGAAATTAGCGGATGCAATCGAGAACGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCACTTTGAGAAGTGCCGGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAAGCTATGACAGTAGAGGGGCAGAAGAAAAAGCTAGAAGAACATGAGCAGTTGTTAAGTCATCGAAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGCGAGCCCTAG

Coding sequence (CDS)

ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCTAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATCCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACAGCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCTCAATTTCAACAGCAATTGCAAACCCAACATTTCCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTGGAGAAATTAGCGGATGCAATCGAGAACGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCACTTTGAGAAGTGCCGGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAAGCTATGACAGTAGAGGGGCAGAAGAAAAAGCTAGAAGAACATGAGCAGTTGTTAAGTCATCGAAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGCGAGCCCTAG

Protein sequence

MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQTQHFPQQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Homology
[Close]
BLAST of CsaV3_3G043850.1 vs. NCBI nr
Match: XP_011652352.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.2e-52
Identity = 252/264 (95.45%), Postives = 252/264 (95.45%), Query Frame = 0 

Query: 1   MDFPGGGNWSMIPNIPNLTNSSNLSQESIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDFPGGGNWSMIPNIPNLTNSSNLSQESIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDFPGGGNWSMIPNIPNLTNSSNLSQESIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTQHFPXXXXXXXXXX 120
           XFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTQHFP          
Sbjct: 61  XFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTQHFP---------- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLASHFHLLHLV 180
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLASHFHLLHLV
Sbjct: 121 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLASHFHLLHLV 180

Query: 181 EKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQ 240
           EKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQ
Sbjct: 181 EKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQ 240

Query: 241 LLSHRRELIGKYKNSVEELVKGEP 265
           LLSHRRELIGKYKNSVEELVKGEP
Sbjct: 241 LLSHRRELIGKYKNSVEELVKGEP 252

[Close]
BLAST of CsaV3_3G043850.1 vs. NCBI nr
Match: XP_016900408.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 2.7e-43
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 170 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 229
           LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVE
Sbjct: 164 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 223

Query: 230 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Sbjct: 224 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 258

[Close]
BLAST of CsaV3_3G043850.1 vs. NCBI nr
Match: XP_022997827.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 7.5e-41
Identity = 90/96 (93.75%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 169 SLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTV 228
           SLASHFHL HLVEKLADAIE G RDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTV
Sbjct: 147 SLASHFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTV 206

Query: 229 EGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           EGQKKKLEEHEQLLS+RRELIGKYK+SVEELVKGEP
Sbjct: 207 EGQKKKLEEHEQLLSYRRELIGKYKSSVEELVKGEP 242

[Close]
BLAST of CsaV3_3G043850.1 vs. NCBI nr
Match: XP_023523773.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 7.5e-41
Identity = 90/96 (93.75%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 169 SLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTV 228
           SLASHFHL HLVEKLADAIE G RDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTV
Sbjct: 146 SLASHFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTV 205

Query: 229 EGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           EGQKKKLEEHEQLLS+RRELIGKYK+SVEELVKGEP
Sbjct: 206 EGQKKKLEEHEQLLSYRRELIGKYKSSVEELVKGEP 241

[Close]
BLAST of CsaV3_3G043850.1 vs. NCBI nr
Match: XP_023542032.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0 

Query: 170 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 229
           LASHFHL HLVEKLAD IENG RDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVE
Sbjct: 151 LASHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 210

Query: 230 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE 264
           GQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Sbjct: 211 GQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 244

[Close]
BLAST of CsaV3_3G043850.1 vs. TAIR10
Match: AT1G55080.1 (MED9)

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-32
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 169 SLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTV 228
           SLASHFHL  +VEKLAD IENGTRDQ SDALVN+LN+HF+KC+QLLNSISGSL SK MTV
Sbjct: 149 SLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTV 208

Query: 229 EGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE 264
           +GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 209 DGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]
BLAST of CsaV3_3G043850.1 vs. TAIR10
Match: AT1G29580.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 39/90 (43.33%), Postives = 44/90 (48.89%), Query Frame = 0 

Query: 175 HLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKK 234
           HL  LVE L D  E+  RDQ SDAL  D+                           QK+ 
Sbjct: 27  HLYPLVENLKDVTESRARDQNSDALYVDV---------------------------QKQN 86

Query: 235 LEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           LEE EQLL  R ELI +YK SVEE+VK EP
Sbjct: 87  LEESEQLLQQRMELIEEYKKSVEEIVKKEP 89

[Close]
BLAST of CsaV3_3G043850.1 vs. Swiss-Prot
Match: sp|Q8RWA2|MED9_ARATH (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.8e-31
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 169 SLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTV 228
           SLASHFHL  +VEKLAD IENGTRDQ SDALVN+LN+HF+KC+QLLNSISGSL SK MTV
Sbjct: 149 SLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTV 208

Query: 229 EGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE 264
           +GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 209 DGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]
BLAST of CsaV3_3G043850.1 vs. TrEMBL
Match: tr|A0A1S4DWQ6|A0A1S4DWQ6_CUCME (Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN=LOC103490024 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.8e-43
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 170 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 229
           LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVE
Sbjct: 164 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVE 223

Query: 230 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Sbjct: 224 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 258

[Close]
BLAST of CsaV3_3G043850.1 vs. TrEMBL
Match: tr|A0A0A0LDE7|A0A0A0LDE7_CUCSA (Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis sativus OX=3659 GN=MED9 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.1e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 185 DAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 244
           DAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH
Sbjct: 11  DAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70

Query: 245 RRELIGKYKNSVEELVKGEP 265
           RRELIGKYKNSVEELVKGEP
Sbjct: 71  RRELIGKYKNSVEELVKGEP 90

[Close]
BLAST of CsaV3_3G043850.1 vs. TrEMBL
Match: tr|A0A251PVF0|A0A251PVF0_PRUPE (Mediator of RNA polymerase II transcription subunit 9 OS=Prunus persica OX=3760 GN=MED9 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.0e-35
Identity = 76/95 (80.00%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 170 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 229
           LASHFHL HLVEKLAD IENGTRDQQS++L++DLNNHFEKC+QLLNSISGS+S+KAMTVE
Sbjct: 89  LASHFHLFHLVEKLADTIENGTRDQQSESLISDLNNHFEKCQQLLNSISGSISTKAMTVE 148

Query: 230 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           GQK+KLEE EQLL+ RR+LI KY+NSVE+L+K EP
Sbjct: 149 GQKRKLEESEQLLNQRRDLITKYRNSVEDLLKSEP 183

[Close]
BLAST of CsaV3_3G043850.1 vs. TrEMBL
Match: tr|A0A067L0N4|A0A067L0N4_JATCU (Mediator of RNA polymerase II transcription subunit 9 OS=Jatropha curcas OX=180498 GN=MED9 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.5e-34
Identity = 75/95 (78.95%), Postives = 87/95 (91.58%), Query Frame = 0 

Query: 170 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 229
           LASHFHLLHLVE LA+ IENGTRDQ SDALVN+LNNHFEKC+QLLNSIS S++SK+MTVE
Sbjct: 93  LASHFHLLHLVENLAEVIENGTRDQHSDALVNELNNHFEKCQQLLNSISSSINSKSMTVE 152

Query: 230 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           GQK+KLEE EQLL+ RR+L+ KY+NSVEEL+K EP
Sbjct: 153 GQKRKLEESEQLLNQRRDLMAKYRNSVEELIKSEP 187

[Close]
BLAST of CsaV3_3G043850.1 vs. TrEMBL
Match: tr|A0A2P5BHB3|A0A2P5BHB3_PARAD (Mediator of RNA polymerase II transcription subunit 9 OS=Parasponia andersonii OX=3476 GN=MED9 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 170 LASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVE 229
           LASHF L HLVEKL +AIENG RDQQSDAL+NDLNNHF+KCRQLLNSISGSLS+KAMTVE
Sbjct: 85  LASHFRLFHLVEKLGEAIENGNRDQQSDALINDLNNHFDKCRQLLNSISGSLSTKAMTVE 144

Query: 230 GQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP 265
           GQK+KLEE EQ+L+ RR+LI KY  SVEELVK EP
Sbjct: 145 GQKRKLEESEQMLNQRRDLINKYIKSVEELVKSEP 179

The following BLAST results are available for this feature:
BLAST of CsaV3_3G043850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652352.14.2e-5295.45PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Cucumis sativu... [more]
XP_016900408.12.7e-4398.95PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucum... [more]
XP_022997827.17.5e-4193.75mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima][more]
XP_023523773.17.5e-4193.75mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp... [more]
XP_023542032.11.3e-4094.68mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp... [more]
BLAST of CsaV3_3G043850.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55080.12.7e-3271.58MED9[more]
AT1G29580.12.0e-0843.33unknown protein[more]
BLAST of CsaV3_3G043850.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8RWA2|MED9_ARATH4.8e-3171.58Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX... [more]
BLAST of CsaV3_3G043850.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DWQ6|A0A1S4DWQ6_CUCME1.8e-4398.95Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LDE7|A0A0A0LDE7_CUCSA4.1e-35100.00Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis sativus OX=3659... [more]
tr|A0A251PVF0|A0A251PVF0_PRUPE9.0e-3580.00Mediator of RNA polymerase II transcription subunit 9 OS=Prunus persica OX=3760 ... [more]
tr|A0A067L0N4|A0A067L0N4_JATCU4.5e-3478.95Mediator of RNA polymerase II transcription subunit 9 OS=Jatropha curcas OX=1804... [more]
tr|A0A2P5BHB3|A0A2P5BHB3_PARAD5.9e-3481.05Mediator of RNA polymerase II transcription subunit 9 OS=Parasponia andersonii O... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR038790Med9_plant
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016592 mediator complex
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G043850CsaV3_3G043850gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G043850.1CsaV3_3G043850.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G043850.1.exon1CsaV3_3G043850.1.exon1exon
CsaV3_3G043850.1.exon2CsaV3_3G043850.1.exon2exon
CsaV3_3G043850.1.exon3CsaV3_3G043850.1.exon3exon
CsaV3_3G043850.1.exon4CsaV3_3G043850.1.exon4exon
CsaV3_3G043850.1.exon5CsaV3_3G043850.1.exon5exon
CsaV3_3G043850.1.exon6CsaV3_3G043850.1.exon6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G043850.1.cds1CsaV3_3G043850.1.cds1CDS
CsaV3_3G043850.1.cds2CsaV3_3G043850.1.cds2CDS
CsaV3_3G043850.1.cds3CsaV3_3G043850.1.cds3CDS
CsaV3_3G043850.1.cds4CsaV3_3G043850.1.cds4CDS
CsaV3_3G043850.1.cds5CsaV3_3G043850.1.cds5CDS


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 125..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..108
IPR038790Mediator of RNA polymerase II transcription subunit 9, plantPANTHERPTHR37188FAMILY NOT NAMEDcoord: 138..264