CsaV3_3G042980.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G042980.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 34896129 .. 34897164 (-)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGTCATACTCAACCGCCCATAGCCCACAGTTAAAAGTAAACAAATGCTCCAACTTGATCTACCAATTTGATGCCTCAATATGGCTTTCTAAAAGTAAACCAATATTCTAAATTAGAGAGAATTATTTTCATATATTCACATTGTATAGATCAGAAATTTCTTGAAATTTCCACACAATTCCTATAAATAAATAGCCCCCCATTATAAGCACACATCTATATCATCATCAAACACCAAATTCTCTCTCTTTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCATATATTATTATATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAACCCGACGATCTTACCGCCAAACCCAAAGGAGCAATCCACAGTACCAATAACAAGGCTGCTGTTGCTGTTGAACCTATTGTCATCTCCCGGAATAATCCCAAGAACTCCACTTTCTAATTAATCCCAACTCTGTATTTTTCATTTTGTATCAATAACTTTTGTTTTTTGTTTCTGGGTTTGCTTAATTAATCCGTGTAATTTCATTATTGAAGTTGGAAAACTATTTACTTGAGCTTCAGAATAATACAAAAATTATATGAAGGAACAGATACCCTTCTTCCTTAAACTTATTGCAAATTTGGTTAGTATATCTGTGTAGCAATATTTTGAAAGTGGAATTGAAAAATGATAAGAAATAACAAGAACTAATCAACAAAGGTATGATAATAGAAATAACATTGATCAAAGTTCCAAGTGGGGTTGGTGTGTATGGGGGCGGCACATTAAAAAAATAAAACAAGAAGACTTTAACGCCACACAAGGAAAATAAGAAAAGAAAGAAGTCGAAAGAGAAACTAATTGGAATTCTTTCTCCATTTTACTCATCCAAAACCCTAATTATAATACTGTTGTTGTTGGAGTATCGTAATGGTACTTTTTTACACTAAGAATTTGTTTTCATTGAATACCAC

mRNA sequence

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAACCCGACGATCTTACCGCCAAACCCAAAGGAGCAATCCACAGTACCAATAACAAGGCTGCTGTTGCTGTTGAACCTATTGTCATCTCCCGGAATAATCCCAAGAACTCCACTTTCTAA

Coding sequence (CDS)

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAACCCGACGATCTTACCGCCAAACCCAAAGGAGCAATCCACAGTACCAATAACAAGGCTGCTGTTGCTGTTGAACCTATTGTCATCTCCCGGAATAATCCCAAGAACTCCACTTTCTAA

Protein sequence

MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVEPIVISRNNPKNSTF
Homology
[Close]
BLAST of CsaV3_3G042980.1 vs. NCBI nr
Match: KGN59725.1 (hypothetical protein Csa_3G841490 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60

Query: 61 PIVISRNNPKNSTF 75
          PIVISRNNPKNSTF
Sbjct: 61 PIVISRNNPKNSTF 74

[Close]
BLAST of CsaV3_3G042980.1 vs. TrEMBL
Match: tr|A0A0A0LCI2|A0A0A0LCI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.2e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60

Query: 61 PIVISRNNPKNSTF 75
          PIVISRNNPKNSTF
Sbjct: 61 PIVISRNNPKNSTF 74

[Close]
BLAST of CsaV3_3G042980.1 vs. TrEMBL
Match: tr|A0A2G9HXY2|A0A2G9HXY2_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04921 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.8e-04
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 0 

Query: 1   MAGLQYKFFPTDFLYPRPSSSS--DVPNNIVVSVVPPKPD--DLTAKPKGAIHSTNNKA- 60
           MAGLQY+FFPTDF++P P +++     NN V  V PPK D  D  AK   A++S + KA 
Sbjct: 27  MAGLQYRFFPTDFMFPSPPTTARDGGNNNQVPMVKPPKADETDNDAKAIAAVNSKSLKAT 86

Query: 61  ----AVAVEPIVISRN 68
               A A+ PI+   N
Sbjct: 87  SSSNATALAPIIHKHN 102

The following BLAST results are available for this feature:
BLAST of CsaV3_3G042980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59725.11.2e-33100.00hypothetical protein Csa_3G841490 [Cucumis sativus][more]
BLAST of CsaV3_3G042980.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G042980.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G042980.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCI2|A0A0A0LCI2_CUCSA8.2e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1[more]
tr|A0A2G9HXY2|A0A2G9HXY2_9LAMI6.8e-0444.74Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04921 P... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G042980CsaV3_3G042980gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G042980.1.cds1CsaV3_3G042980.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G042980.1.exon1CsaV3_3G042980.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G042980.1CsaV3_3G042980.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38223FAMILY NOT NAMEDcoord: 1..70