CsaV3_3G032530.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G032530.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUlp1 protease family, C-terminal catalytic domain containing protein
Locationchr3 : 28068799 .. 28069962 (-)
Sequence length825
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATGATAAAGAGAAGTTTAGGAGTTATCCTTGGGGAAGGTTGTGCTATAGTTTGACAAAGCAATTCATTCAAAATGCTGTAAAATCCAAAAGGAAGTCGAAAAACTCAGAATTAGAATCTAAATCATGTGCCTTTCTACAAGGCTTCCCTATAGTTCTTGCTTATTGGGCATACAAAATACTTCCTCAACTTGCTAACGAATATGTGACGAGAATAGGAAAAGGCTGTCTCAGAATATTAAATTGGGAATCCAGTGTACAAGTAGATTGGCAAGATCTTGAAGCCAACGTGTTTCTGGAAAAAAATGTAAGTTTTTAATTTGTTTTCTTTTTGTCACCAATATCACTGATATTGATCTATCAGTGATAGATCCGTATCAATGATAGACTGCTATCTACAAATATATGTGCATAAGTTTTTTTTTATTTATTTAATACTGATTGAATATTTTTTCTAGCTATCTGTGGTCTCCAATGTTGCATCTAAAGAAGAAATGTCATCTGAGTACTTTCGATATTTTGTGGAGTTAGAAAACGATAGATTGGTTGAAGAAGCATATGTTGTAAAGGATAAAAATATTGTAGAAAGAATATCTTCTTTACATGAAGATATTGAAGATTTAAAAAAACAACACAAAGAAGATTTAGACCACCTGAAAAAAGGACAAGAGGAGATCGTTCATTTGTTACTTTCCCTAACAGAAGTTGTGAATCAAAGACTTCCACACAAATGTGAAAGTGAAAAACAATCTGAAGAGTCCTTGGAAAAGAATCATCCTCCATCAATGAGTCTAGAAATGATAGATGCTGATATTGATAGTAACATTGATCAAGCAGTTGCTTATGCAACTTCTTGCGCAAAAAACAAAGAGGTAACACTATTAAAGCTTCTACTTCTTTTACTTTTATTTTTTCCAAGACTATTACTAGAGTATGTTTGTGAGTGAAAAGTCTATCAATGATAGATCTGTATCAGTGATAGACTGGTTTTTCTTTGATTGAATATTAACCGTTTCAGTAATTTTTTTCATTGCAATACTAATATTAATTTCTACAAAAGACTATAGATAACGACGAAACTAAGGAAGATGATGATAATCATCGTGAAAATAAGTCAAAAACGGTGCATGACATATCAAAGAAAGTGAAGGTATTATAA

mRNA sequence

ATGTTGGATGATAAAGAGAAGTTTAGGAGTTATCCTTGGGGAAGGTTGTGCTATAGTTTGACAAAGCAATTCATTCAAAATGCTGTAAAATCCAAAAGGAAGTCGAAAAACTCAGAATTAGAATCTAAATCATGTGCCTTTCTACAAGGCTTCCCTATAGTTCTTGCTTATTGGGCATACAAAATACTTCCTCAACTTGCTAACGAATATGTGACGAGAATAGGAAAAGGCTGTCTCAGAATATTAAATTGGGAATCCAGTGTACAAGTAGATTGGCAAGATCTTGAAGCCAACGTGTTTCTGGAAAAAAATCTATCTGTGGTCTCCAATGTTGCATCTAAAGAAGAAATGTCATCTGAGTACTTTCGATATTTTGTGGAGTTAGAAAACGATAGATTGGTTGAAGAAGCATATGTTGTAAAGGATAAAAATATTGTAGAAAGAATATCTTCTTTACATGAAGATATTGAAGATTTAAAAAAACAACACAAAGAAGATTTAGACCACCTGAAAAAAGGACAAGAGGAGATCGTTCATTTGTTACTTTCCCTAACAGAAGTTGTGAATCAAAGACTTCCACACAAATGTGAAAGTGAAAAACAATCTGAAGAGTCCTTGGAAAAGAATCATCCTCCATCAATGAGTCTAGAAATGATAGATGCTGATATTGATAGTAACATTGATCAAGCAGTTGCTTATGCAACTTCTTGCGCAAAAAACAAAGAGACTATAGATAACGACGAAACTAAGGAAGATGATGATAATCATCGTGAAAATAAGTCAAAAACGGTGCATGACATATCAAAGAAAGTGAAGGTATTATAA

Coding sequence (CDS)

ATGTTGGATGATAAAGAGAAGTTTAGGAGTTATCCTTGGGGAAGGTTGTGCTATAGTTTGACAAAGCAATTCATTCAAAATGCTGTAAAATCCAAAAGGAAGTCGAAAAACTCAGAATTAGAATCTAAATCATGTGCCTTTCTACAAGGCTTCCCTATAGTTCTTGCTTATTGGGCATACAAAATACTTCCTCAACTTGCTAACGAATATGTGACGAGAATAGGAAAAGGCTGTCTCAGAATATTAAATTGGGAATCCAGTGTACAAGTAGATTGGCAAGATCTTGAAGCCAACGTGTTTCTGGAAAAAAATCTATCTGTGGTCTCCAATGTTGCATCTAAAGAAGAAATGTCATCTGAGTACTTTCGATATTTTGTGGAGTTAGAAAACGATAGATTGGTTGAAGAAGCATATGTTGTAAAGGATAAAAATATTGTAGAAAGAATATCTTCTTTACATGAAGATATTGAAGATTTAAAAAAACAACACAAAGAAGATTTAGACCACCTGAAAAAAGGACAAGAGGAGATCGTTCATTTGTTACTTTCCCTAACAGAAGTTGTGAATCAAAGACTTCCACACAAATGTGAAAGTGAAAAACAATCTGAAGAGTCCTTGGAAAAGAATCATCCTCCATCAATGAGTCTAGAAATGATAGATGCTGATATTGATAGTAACATTGATCAAGCAGTTGCTTATGCAACTTCTTGCGCAAAAAACAAAGAGACTATAGATAACGACGAAACTAAGGAAGATGATGATAATCATCGTGAAAATAAGTCAAAAACGGTGCATGACATATCAAAGAAAGTGAAGGTATTATAA

Protein sequence

MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAYKILPQLANEYVTRIGKGCLRILNWESSVQVDWQDLEANVFLEKNLSVVSNVASKEEMSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEEIVHLLLSLTEVVNQRLPHKCESEKQSEESLEKNHPPSMSLEMIDADIDSNIDQAVAYATSCAKNKETIDNDETKEDDDNHRENKSKTVHDISKKVKVL
Homology
[Close]
BLAST of CsaV3_3G032530.1 vs. NCBI nr
Match: XP_008460281.1 (PREDICTED: uncharacterized protein LOC103499154 isoform X1 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 4.4e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           MLDDKEKFR+YPWGRLC+SLTKQFIQNAVKSKRKSKNSE ESK+ AFLQGFP+VLAYWAY
Sbjct: 56  MLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNSETESKAYAFLQGFPMVLAYWAY 115

Query: 61  KILPQLANEYVTRIGKGCLRILNWESS 88
           +I PQLA+ YVTRIGKGC RILNWES+
Sbjct: 116 EIPPQLASRYVTRIGKGCPRILNWESN 142

[Close]
BLAST of CsaV3_3G032530.1 vs. NCBI nr
Match: XP_008460282.1 (PREDICTED: uncharacterized protein LOC103499154 isoform X2 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 4.4e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           MLDDKEKFR+YPWGRLC+SLTKQFIQNAVKSKRKSKNSE ESK+ AFLQGFP+VLAYWAY
Sbjct: 29  MLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNSETESKAYAFLQGFPMVLAYWAY 88

Query: 61  KILPQLANEYVTRIGKGCLRILNWESS 88
           +I PQLA+ YVTRIGKGC RILNWES+
Sbjct: 89  EIPPQLASRYVTRIGKGCPRILNWESN 115

[Close]
BLAST of CsaV3_3G032530.1 vs. NCBI nr
Match: KGN65296.1 (hypothetical protein Csa_1G303710 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 53/72 (73.61%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 214 MSLEMIDADIDSNIDQAVAYATSCAKNKETIDNDETKE-----------DDDNHRENKSK 273
           MSLEMIDADID+NIDQAVAYATSCAK+KE +DNDETKE             DNHRENKSK
Sbjct: 1   MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEXXXXXXXXXXXXXDNHRENKSK 60

Query: 274 TVHDISKKVKVL 275
           TVHDISKKVK++
Sbjct: 61  TVHDISKKVKIV 72

[Close]
BLAST of CsaV3_3G032530.1 vs. NCBI nr
Match: XP_008440207.1 (PREDICTED: uncharacterized protein LOC103484737 isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 9.6e-15
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           ++DDKE+F SYPWGR+ Y +T  F++ A+KS            S   + GFP  L  WAY
Sbjct: 746 LIDDKEQFDSYPWGRISYEITIDFVKKAIKS---------NDASAIGVGGFPFALCVWAY 805

Query: 61  KILPQLA---NEYVTRIGKGCLRILNWESSVQVDWQDLEANVFLEKNLSVVSNVASKEEM 120
           + +P LA   N +  RI  G  R+ NW + V  +W+DL   VF  +   V   +A++ EM
Sbjct: 806 ETIPLLALNSNFFAMRISFGTPRMNNWAADVHPEWKDLSEKVFQSEAFDVQPLIATETEM 860

Query: 121 SSEY 122
              Y
Sbjct: 866 EMSY 860

[Close]
BLAST of CsaV3_3G032530.1 vs. NCBI nr
Match: XP_008440208.1 (PREDICTED: uncharacterized protein LOC103484737 isoform X2 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 9.6e-15
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           ++DDKE+F SYPWGR+ Y +T  F++ A+KS            S   + GFP  L  WAY
Sbjct: 744 LIDDKEQFDSYPWGRISYEITIDFVKKAIKS---------NDASAIGVGGFPFALCVWAY 803

Query: 61  KILPQLA---NEYVTRIGKGCLRILNWESSVQVDWQDLEANVFLEKNLSVVSNVASKEEM 120
           + +P LA   N +  RI  G  R+ NW + V  +W+DL   VF  +   V   +A++ EM
Sbjct: 804 ETIPLLALNSNFFAMRISFGTPRMNNWAADVHPEWKDLSEKVFQSEAFDVQPLIATETEM 858

Query: 121 SSEY 122
              Y
Sbjct: 864 EMSY 858

[Close]
BLAST of CsaV3_3G032530.1 vs. TrEMBL
Match: tr|A0A1S3CCL6|A0A1S3CCL6_CUCME (uncharacterized protein LOC103499154 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499154 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.9e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           MLDDKEKFR+YPWGRLC+SLTKQFIQNAVKSKRKSKNSE ESK+ AFLQGFP+VLAYWAY
Sbjct: 29  MLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNSETESKAYAFLQGFPMVLAYWAY 88

Query: 61  KILPQLANEYVTRIGKGCLRILNWESS 88
           +I PQLA+ YVTRIGKGC RILNWES+
Sbjct: 89  EIPPQLASRYVTRIGKGCPRILNWESN 115

[Close]
BLAST of CsaV3_3G032530.1 vs. TrEMBL
Match: tr|A0A1S3CC52|A0A1S3CC52_CUCME (uncharacterized protein LOC103499154 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499154 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.9e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           MLDDKEKFR+YPWGRLC+SLTKQFIQNAVKSKRKSKNSE ESK+ AFLQGFP+VLAYWAY
Sbjct: 56  MLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNSETESKAYAFLQGFPMVLAYWAY 115

Query: 61  KILPQLANEYVTRIGKGCLRILNWESS 88
           +I PQLA+ YVTRIGKGC RILNWES+
Sbjct: 116 EIPPQLASRYVTRIGKGCPRILNWESN 142

[Close]
BLAST of CsaV3_3G032530.1 vs. TrEMBL
Match: tr|A0A0A0LZ92|A0A0A0LZ92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303710 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 53/72 (73.61%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 214 MSLEMIDADIDSNIDQAVAYATSCAKNKETIDNDETKE-----------DDDNHRENKSK 273
           MSLEMIDADID+NIDQAVAYATSCAK+KE +DNDETKE             DNHRENKSK
Sbjct: 1   MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEXXXXXXXXXXXXXDNHRENKSK 60

Query: 274 TVHDISKKVKVL 275
           TVHDISKKVK++
Sbjct: 61  TVHDISKKVKIV 72

[Close]
BLAST of CsaV3_3G032530.1 vs. TrEMBL
Match: tr|A0A1S3B0K0|A0A1S3B0K0_CUCME (uncharacterized protein LOC103484737 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103484737 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-15
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           ++DDKE+F SYPWGR+ Y +T  F++ A+KS            S   + GFP  L  WAY
Sbjct: 710 LIDDKEQFDSYPWGRISYEITIDFVKKAIKS---------NDASAIGVGGFPFALCVWAY 769

Query: 61  KILPQLA---NEYVTRIGKGCLRILNWESSVQVDWQDLEANVFLEKNLSVVSNVASKEEM 120
           + +P LA   N +  RI  G  R+ NW + V  +W+DL   VF  +   V   +A++ EM
Sbjct: 770 ETIPLLALNSNFFAMRISFGTPRMNNWAADVHPEWKDLSEKVFQSEAFDVQPLIATETEM 824

Query: 121 SSEY 122
              Y
Sbjct: 830 EMSY 824

[Close]
BLAST of CsaV3_3G032530.1 vs. TrEMBL
Match: tr|A0A1S4DTS6|A0A1S4DTS6_CUCME (uncharacterized protein LOC103484737 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484737 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-15
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 0 

Query: 1   MLDDKEKFRSYPWGRLCYSLTKQFIQNAVKSKRKSKNSELESKSCAFLQGFPIVLAYWAY 60
           ++DDKE+F SYPWGR+ Y +T  F++ A+KS            S   + GFP  L  WAY
Sbjct: 744 LIDDKEQFDSYPWGRISYEITIDFVKKAIKS---------NDASAIGVGGFPFALCVWAY 803

Query: 61  KILPQLA---NEYVTRIGKGCLRILNWESSVQVDWQDLEANVFLEKNLSVVSNVASKEEM 120
           + +P LA   N +  RI  G  R+ NW + V  +W+DL   VF  +   V   +A++ EM
Sbjct: 804 ETIPLLALNSNFFAMRISFGTPRMNNWAADVHPEWKDLSEKVFQSEAFDVQPLIATETEM 858

Query: 121 SSEY 122
              Y
Sbjct: 864 EMSY 858

The following BLAST results are available for this feature:
BLAST of CsaV3_3G032530.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460281.14.4e-3686.21PREDICTED: uncharacterized protein LOC103499154 isoform X1 [Cucumis melo][more]
XP_008460282.14.4e-3686.21PREDICTED: uncharacterized protein LOC103499154 isoform X2 [Cucumis melo][more]
KGN65296.12.3e-1673.61hypothetical protein Csa_1G303710 [Cucumis sativus][more]
XP_008440207.19.6e-1537.10PREDICTED: uncharacterized protein LOC103484737 isoform X1 [Cucumis melo][more]
XP_008440208.19.6e-1537.10PREDICTED: uncharacterized protein LOC103484737 isoform X2 [Cucumis melo][more]
BLAST of CsaV3_3G032530.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G032530.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G032530.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CCL6|A0A1S3CCL6_CUCME2.9e-3686.21uncharacterized protein LOC103499154 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CC52|A0A1S3CC52_CUCME2.9e-3686.21uncharacterized protein LOC103499154 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LZ92|A0A0A0LZ92_CUCSA1.5e-1673.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303710 PE=4 SV=1[more]
tr|A0A1S3B0K0|A0A1S3B0K0_CUCME6.3e-1537.10uncharacterized protein LOC103484737 isoform X6 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4DTS6|A0A1S4DTS6_CUCME6.3e-1537.10uncharacterized protein LOC103484737 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G032530CsaV3_3G032530gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G032530.1CsaV3_3G032530.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G032530.1.cds3CsaV3_3G032530.1.cds3CDS
CsaV3_3G032530.1.cds2CsaV3_3G032530.1.cds2CDS
CsaV3_3G032530.1.cds1CsaV3_3G032530.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G032530.1.exon3CsaV3_3G032530.1.exon3exon
CsaV3_3G032530.1.exon2CsaV3_3G032530.1.exon2exon
CsaV3_3G032530.1.exon1CsaV3_3G032530.1.exon1exon


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 153..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..274